Wall clock time and date at job start Wed Apr 1 2020 03:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 120.00060 * 2 1 4 4 H 1.48500 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46863 * 299.99467 * 3 2 1 6 6 H 1.48493 * 109.46894 * 59.99673 * 3 2 1 7 7 C 1.38811 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00403 * 190.73360 * 7 2 1 9 9 N 1.36939 * 120.00179 * 10.73118 * 7 2 1 10 10 C 1.47153 * 120.97745 * 31.17925 * 9 7 2 11 11 C 1.53299 * 108.38172 * 129.48762 * 10 9 7 12 12 O 1.42958 * 109.22367 * 52.30498 * 11 10 9 13 13 C 1.42964 * 114.16490 * 297.42213 * 12 11 10 14 14 C 1.47144 * 120.98618 * 211.20489 * 9 7 2 15 15 H 1.09007 * 109.68277 * 110.75023 * 14 9 7 16 16 C 1.53001 * 109.68377 * 350.24056 * 14 9 7 17 17 N 1.46495 * 109.47252 * 60.60459 * 16 14 9 18 18 C 1.34778 * 119.99859 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00408 * 359.97438 * 18 17 16 20 20 C 1.50710 * 119.99836 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.46776 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.46665 * 179.97438 * 21 20 18 23 23 C 1.32565 * 119.99914 * 125.28037 * 22 21 20 24 24 C 1.47809 * 120.00000 * 179.72532 * 23 22 21 25 25 C 1.39534 * 120.14268 * 359.71723 * 24 23 22 26 26 C 1.37975 * 119.85489 * 179.76640 * 25 24 23 27 27 C 1.38342 * 120.14311 * 0.49307 * 26 25 24 28 28 C 1.38347 * 120.28390 * 359.76131 * 27 26 25 29 29 C 1.37970 * 120.14629 * 0.02562 * 28 27 26 30 30 H 0.97001 * 119.99875 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.68436 * 249.21118 * 10 9 7 32 32 H 1.08997 * 109.68174 * 9.76821 * 10 9 7 33 33 H 1.09007 * 109.51349 * 172.22703 * 11 10 9 34 34 H 1.08994 * 109.51432 * 292.32751 * 11 10 9 35 35 H 1.09004 * 109.51327 * 302.65080 * 13 12 11 36 36 H 1.08999 * 109.51182 * 182.50673 * 13 12 11 37 37 H 1.09010 * 109.46441 * 300.60588 * 16 14 9 38 38 H 1.09000 * 109.47578 * 180.61201 * 16 14 9 39 39 H 0.96997 * 120.00340 * 0.02562 * 17 16 14 40 40 H 1.08998 * 109.47051 * 59.99924 * 20 18 17 41 41 H 1.09000 * 109.46714 * 299.99566 * 20 18 17 42 42 H 1.08998 * 109.47042 * 60.00348 * 21 20 18 43 43 H 1.09000 * 109.47164 * 299.99950 * 21 20 18 44 44 H 1.08003 * 119.99966 * 304.99554 * 22 21 20 45 45 H 1.08004 * 120.00004 * 359.72121 * 23 22 21 46 46 H 1.08003 * 120.06999 * 359.97438 * 25 24 23 47 47 H 1.08000 * 119.92713 * 180.23932 * 26 25 24 48 48 H 1.07997 * 119.85738 * 179.74732 * 27 26 25 49 49 H 1.08010 * 119.92549 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.07265 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0762 -1.2103 0.1747 9 7 1.3436 -2.3778 -0.2198 10 6 0.1536 -2.4232 -1.0841 11 6 0.3403 -3.5515 -2.1050 12 8 0.6710 -4.7597 -1.4160 13 6 1.9024 -4.7022 -0.6919 14 6 1.7957 -3.6329 0.4012 15 1 1.0756 -3.9492 1.1560 16 6 3.1645 -3.4223 1.0516 17 7 3.0596 -2.3919 2.0876 18 6 4.1486 -2.0374 2.7982 19 8 5.2153 -2.5717 2.5802 20 6 4.0405 -0.9778 3.8644 21 6 5.4095 -0.7672 4.5146 22 6 5.3015 0.2928 5.5804 23 6 5.6997 0.0317 6.8176 24 6 5.5995 1.0733 7.8615 25 6 5.0917 2.3343 7.5467 26 6 4.9963 3.3006 8.5269 27 6 5.4123 3.0248 9.8171 28 6 5.9216 1.7783 10.1345 29 6 6.0182 0.8018 9.1646 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7321 -2.6181 -0.4795 32 1 0.0414 -1.4721 -1.6046 33 1 -0.5844 -3.6929 -2.6646 34 1 1.1454 -3.2912 -2.7920 35 1 2.7139 -4.4465 -1.3732 36 1 2.1016 -5.6715 -0.2349 37 1 3.8814 -3.1045 0.2943 38 1 3.5009 -4.3566 1.5010 39 1 2.2064 -1.9648 2.2623 40 1 3.3241 -1.2962 4.6217 41 1 3.7036 -0.0436 3.4153 42 1 6.1261 -0.4490 3.7575 43 1 5.7460 -1.7016 4.9637 44 1 4.9040 1.2666 5.3352 45 1 6.0973 -0.9421 7.0627 46 1 4.7709 2.5523 6.5387 47 1 4.5998 4.2757 8.2854 48 1 5.3393 3.7859 10.5798 49 1 6.2450 1.5693 11.1437 50 1 6.4164 -0.1707 9.4136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733699515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:12 Heat of formation + Delta-G solvation = -23.404563 kcal Electronic energy + Delta-G solvation = -29403.211597 eV Core-core repulsion = 25396.087308 eV Total energy + Delta-G solvation = -4007.124289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.47006 -39.27889 -38.35130 -35.75479 -35.20368 -33.57476 -32.39485 -31.52529 -31.15042 -30.47147 -28.98015 -27.24390 -25.83523 -24.10728 -23.48188 -22.96659 -21.96624 -21.46411 -19.84853 -19.50464 -19.41308 -17.28809 -17.06118 -16.19330 -15.99329 -15.74237 -15.61272 -15.20979 -14.89033 -14.80978 -14.58157 -14.25699 -13.98303 -13.86460 -13.59583 -13.43577 -13.26708 -13.09898 -12.97766 -12.61304 -12.45302 -12.15856 -11.88582 -11.64806 -11.52926 -11.26395 -11.09436 -10.99864 -10.93717 -10.84198 -10.75684 -10.43234 -10.27341 -10.23412 -10.08490 -9.69271 -9.41380 -9.15625 -8.98321 -8.71150 -8.27552 -8.20664 -6.76589 -5.94540 -3.44423 0.76643 1.20715 2.38436 3.18451 3.22880 3.33335 3.35472 3.73242 3.82514 4.30188 4.50419 4.55819 4.62599 4.76034 4.87425 5.03675 5.08630 5.13518 5.23028 5.23870 5.25482 5.33174 5.41422 5.58116 5.60944 5.70618 5.76278 5.79654 5.84540 5.87096 5.98324 6.00860 6.09672 6.12091 6.13613 6.21904 6.26716 6.28116 6.30847 6.31339 6.50160 6.57601 6.71668 6.74026 6.80772 7.04482 7.11631 7.45904 7.66956 7.84268 8.21202 8.26262 8.83375 9.01864 9.62207 10.21630 11.11869 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002256 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.247256 B =12406.113981 C =13688.493859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.009 3.991 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.254 4.254 8 H 0.075 0.925 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.136 3.864 17 N -0.695 5.695 18 C 0.508 3.492 19 O -0.567 6.567 20 C -0.137 4.137 21 C -0.075 4.075 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.047 4.047 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.128 4.128 28 C -0.120 4.120 29 C -0.115 4.115 30 H 0.255 0.745 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.415 0.585 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 1.089 13.261 15.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.011 3.989 17 N -0.347 5.347 18 C 0.294 3.706 19 O -0.447 6.447 20 C -0.177 4.177 21 C -0.113 4.113 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.047 4.047 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.146 4.146 28 C -0.138 4.138 29 C -0.133 4.133 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.143 0.857 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.643 0.695 13.092 15.175 hybrid contribution -0.013 1.536 0.003 1.537 sum 7.630 2.232 13.095 15.319 Atomic orbital electron populations 1.69988 1.05182 1.25565 1.53593 1.25154 0.95301 0.98201 1.00442 0.86342 0.79594 0.84105 0.77617 1.20061 1.21438 1.21420 1.19292 0.91375 0.83258 1.44431 0.90790 1.44092 1.31963 1.02963 1.52656 1.21416 0.88891 0.96795 0.91071 1.23349 0.99131 0.86559 0.95264 1.87801 1.40300 1.36146 1.66892 1.22866 0.86661 0.98705 0.94075 1.21431 0.93773 0.89292 0.93751 0.94142 1.21140 0.97406 0.90153 0.90159 1.46040 1.12614 1.40185 1.35820 1.20507 0.84016 0.83482 0.82612 1.90631 1.28271 1.56251 1.69559 1.21586 0.99046 0.99463 0.97619 1.20441 0.96651 0.97500 0.96693 1.23515 0.97130 0.99549 0.94269 1.21659 1.03070 0.98007 0.92646 1.19142 0.98134 0.93718 0.93671 1.21384 0.99627 0.92934 0.99723 1.21105 0.99842 0.99312 0.93270 1.21188 0.99709 0.97051 0.96649 1.21084 0.99853 0.93625 0.99237 1.21274 1.00096 0.99420 0.92466 0.93489 0.95265 0.88971 0.90251 0.94130 0.93515 0.89930 0.91615 0.92443 0.74669 0.89107 0.88679 0.89870 0.90658 0.86779 0.86280 0.85660 0.86029 0.86270 0.86128 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.72 11.13 55.49 0.62 -23.10 16 2 C 0.01 0.21 5.06 -17.43 -0.09 0.13 16 3 Si 0.89 20.13 29.57 -169.99 -5.03 15.11 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.13 7.06 -15.06 -0.11 -6.24 16 8 H 0.07 1.83 5.81 -52.48 -0.30 1.52 16 9 N -0.59 -13.32 3.03 -164.31 -0.50 -13.82 16 10 C 0.14 3.22 5.38 -3.53 -0.02 3.20 16 11 C 0.03 0.66 6.98 37.31 0.26 0.92 16 12 O -0.39 -7.58 10.74 -35.23 -0.38 -7.96 16 13 C 0.06 0.98 6.29 37.31 0.23 1.21 16 14 C 0.12 2.39 3.21 -67.43 -0.22 2.18 16 15 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 16 C 0.14 2.47 4.45 -4.04 -0.02 2.45 16 17 N -0.70 -12.64 3.77 -60.29 -0.23 -12.87 16 18 C 0.51 8.96 7.83 -10.98 -0.09 8.87 16 19 O -0.57 -11.51 15.98 5.56 0.09 -11.42 16 20 C -0.14 -1.92 5.68 -27.88 -0.16 -2.08 16 21 C -0.08 -0.97 4.95 -27.88 -0.14 -1.10 16 22 C -0.13 -1.43 8.94 -36.22 -0.32 -1.75 16 23 C -0.14 -1.46 9.52 -37.58 -0.36 -1.82 16 24 C -0.05 -0.51 5.87 -105.01 -0.62 -1.12 16 25 C -0.12 -1.25 9.40 -39.19 -0.37 -1.62 16 26 C -0.12 -1.11 10.03 -39.64 -0.40 -1.50 16 27 C -0.13 -1.12 10.04 -39.50 -0.40 -1.52 16 28 C -0.12 -1.05 10.03 -39.64 -0.40 -1.45 16 29 C -0.11 -1.11 9.79 -39.19 -0.38 -1.49 16 30 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 2.27 6.33 -51.93 -0.33 1.94 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.31 7.57 -51.92 -0.39 0.92 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.42 7.87 7.32 -40.82 -0.30 7.57 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.07 0.97 7.77 -51.93 -0.40 0.57 16 44 H 0.11 1.21 6.04 -52.48 -0.32 0.90 16 45 H 0.12 1.16 7.87 -52.48 -0.41 0.75 16 46 H 0.13 1.21 6.17 -52.48 -0.32 0.89 16 47 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 48 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 50 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -29.04 402.83 -10.76 -39.81 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.83 Total: 10.92 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.58 Total: -2.73 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.11 Total: -49.79 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.29 Total: -19.38 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.04 -10.76 -39.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733699515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.403 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds