Wall clock time and date at job start Wed Apr 1 2020 03:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 120.00060 * 2 1 4 4 H 1.48500 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46863 * 299.99467 * 3 2 1 6 6 H 1.48493 * 109.46894 * 59.99673 * 3 2 1 7 7 C 1.38811 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00403 * 190.73360 * 7 2 1 9 9 N 1.36939 * 120.00179 * 10.73118 * 7 2 1 10 10 C 1.47153 * 120.97745 * 31.17925 * 9 7 2 11 11 C 1.53299 * 108.38172 * 129.48762 * 10 9 7 12 12 O 1.42958 * 109.22367 * 52.30498 * 11 10 9 13 13 C 1.42964 * 114.16490 * 297.42213 * 12 11 10 14 14 C 1.47144 * 120.98618 * 211.20489 * 9 7 2 15 15 H 1.09007 * 109.68277 * 110.75023 * 14 9 7 16 16 C 1.53001 * 109.68377 * 350.24056 * 14 9 7 17 17 N 1.46495 * 109.47252 * 60.60459 * 16 14 9 18 18 C 1.34778 * 119.99859 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00408 * 359.97438 * 18 17 16 20 20 C 1.50710 * 119.99836 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.46776 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.46665 * 179.97438 * 21 20 18 23 23 C 1.32565 * 119.99914 * 125.28037 * 22 21 20 24 24 C 1.47809 * 120.00000 * 179.72532 * 23 22 21 25 25 C 1.39534 * 120.14268 * 359.71723 * 24 23 22 26 26 C 1.37975 * 119.85489 * 179.76640 * 25 24 23 27 27 C 1.38342 * 120.14311 * 0.49307 * 26 25 24 28 28 C 1.38347 * 120.28390 * 359.76131 * 27 26 25 29 29 C 1.37970 * 120.14629 * 0.02562 * 28 27 26 30 30 H 0.97001 * 119.99875 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.68436 * 249.21118 * 10 9 7 32 32 H 1.08997 * 109.68174 * 9.76821 * 10 9 7 33 33 H 1.09007 * 109.51349 * 172.22703 * 11 10 9 34 34 H 1.08994 * 109.51432 * 292.32751 * 11 10 9 35 35 H 1.09004 * 109.51327 * 302.65080 * 13 12 11 36 36 H 1.08999 * 109.51182 * 182.50673 * 13 12 11 37 37 H 1.09010 * 109.46441 * 300.60588 * 16 14 9 38 38 H 1.09000 * 109.47578 * 180.61201 * 16 14 9 39 39 H 0.96997 * 120.00340 * 0.02562 * 17 16 14 40 40 H 1.08998 * 109.47051 * 59.99924 * 20 18 17 41 41 H 1.09000 * 109.46714 * 299.99566 * 20 18 17 42 42 H 1.08998 * 109.47042 * 60.00348 * 21 20 18 43 43 H 1.09000 * 109.47164 * 299.99950 * 21 20 18 44 44 H 1.08003 * 119.99966 * 304.99554 * 22 21 20 45 45 H 1.08004 * 120.00004 * 359.72121 * 23 22 21 46 46 H 1.08003 * 120.06999 * 359.97438 * 25 24 23 47 47 H 1.08000 * 119.92713 * 180.23932 * 26 25 24 48 48 H 1.07997 * 119.85738 * 179.74732 * 27 26 25 49 49 H 1.08010 * 119.92549 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.07265 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0762 -1.2103 0.1747 9 7 1.3436 -2.3778 -0.2198 10 6 0.1536 -2.4232 -1.0841 11 6 0.3403 -3.5515 -2.1050 12 8 0.6710 -4.7597 -1.4160 13 6 1.9024 -4.7022 -0.6919 14 6 1.7957 -3.6329 0.4012 15 1 1.0756 -3.9492 1.1560 16 6 3.1645 -3.4223 1.0516 17 7 3.0596 -2.3919 2.0876 18 6 4.1486 -2.0374 2.7982 19 8 5.2153 -2.5717 2.5802 20 6 4.0405 -0.9778 3.8644 21 6 5.4095 -0.7672 4.5146 22 6 5.3015 0.2928 5.5804 23 6 5.6997 0.0317 6.8176 24 6 5.5995 1.0733 7.8615 25 6 5.0917 2.3343 7.5467 26 6 4.9963 3.3006 8.5269 27 6 5.4123 3.0248 9.8171 28 6 5.9216 1.7783 10.1345 29 6 6.0182 0.8018 9.1646 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7321 -2.6181 -0.4795 32 1 0.0414 -1.4721 -1.6046 33 1 -0.5844 -3.6929 -2.6646 34 1 1.1454 -3.2912 -2.7920 35 1 2.7139 -4.4465 -1.3732 36 1 2.1016 -5.6715 -0.2349 37 1 3.8814 -3.1045 0.2943 38 1 3.5009 -4.3566 1.5010 39 1 2.2064 -1.9648 2.2623 40 1 3.3241 -1.2962 4.6217 41 1 3.7036 -0.0436 3.4153 42 1 6.1261 -0.4490 3.7575 43 1 5.7460 -1.7016 4.9637 44 1 4.9040 1.2666 5.3352 45 1 6.0973 -0.9421 7.0627 46 1 4.7709 2.5523 6.5387 47 1 4.5998 4.2757 8.2854 48 1 5.3393 3.7859 10.5798 49 1 6.2450 1.5693 11.1437 50 1 6.4164 -0.1707 9.4136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733699515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:11 Heat of formation + Delta-G solvation = -38.184131 kcal Electronic energy + Delta-G solvation = -29403.852487 eV Core-core repulsion = 25396.087308 eV Total energy + Delta-G solvation = -4007.765179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.87250 -40.08510 -39.86377 -37.05111 -36.43294 -35.25723 -33.50577 -33.04962 -32.11398 -31.83851 -29.93503 -28.97007 -27.19019 -25.32301 -25.12210 -23.75053 -23.28048 -22.52920 -21.43979 -20.97688 -20.26579 -18.72988 -18.01533 -17.66582 -17.57765 -17.23013 -16.57542 -16.39622 -16.23227 -16.19548 -15.85185 -15.66855 -15.40854 -15.03891 -14.90435 -14.60772 -14.49548 -14.22395 -14.15393 -13.86125 -13.55230 -13.39454 -13.23149 -13.00857 -12.88564 -12.72751 -12.50705 -12.46177 -12.12521 -12.09635 -12.00153 -11.86543 -11.83813 -11.70851 -11.30339 -11.06791 -10.89455 -10.59456 -10.54504 -9.85755 -9.81304 -9.00588 -8.61235 -7.85870 -5.37178 0.00363 0.50514 1.40758 1.48055 1.54431 1.58210 1.77493 2.40568 2.49329 3.02082 3.03882 3.30297 3.44841 3.68259 3.86043 3.96625 4.05267 4.10472 4.15313 4.19997 4.24441 4.27470 4.34637 4.41459 4.47695 4.52533 4.58362 4.61000 4.64591 4.66128 4.68289 4.75796 4.79096 4.95746 5.01058 5.06751 5.12136 5.15715 5.19086 5.31010 5.40902 5.54398 5.59885 5.61989 5.65893 5.71177 5.73723 5.90830 6.11535 6.29859 6.38187 6.75017 7.11716 7.38633 7.77387 8.33945 9.18645 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002256 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.247256 B =12406.113981 C =13688.493859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.033 4.033 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.284 1.284 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.398 6.398 13 C 0.057 3.943 14 C 0.126 3.874 15 H 0.037 0.963 16 C 0.142 3.858 17 N -0.699 5.699 18 C 0.505 3.495 19 O -0.594 6.594 20 C -0.132 4.132 21 C -0.066 4.066 22 C -0.138 4.138 23 C -0.126 4.126 24 C -0.070 4.070 25 C -0.135 4.135 26 C -0.129 4.129 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.123 4.123 30 H 0.250 0.750 31 H 0.007 0.993 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.043 0.957 35 H 0.048 0.952 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.412 0.588 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.137 0.863 48 H 0.142 0.858 49 H 0.145 0.855 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.882 0.730 14.680 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.229 4.229 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.211 1.211 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.330 5.330 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.317 6.317 13 C -0.021 4.021 14 C 0.019 3.981 15 H 0.055 0.945 16 C 0.017 3.983 17 N -0.349 5.349 18 C 0.293 3.707 19 O -0.477 6.477 20 C -0.171 4.171 21 C -0.104 4.104 22 C -0.156 4.156 23 C -0.144 4.144 24 C -0.070 4.070 25 C -0.153 4.153 26 C -0.147 4.147 27 C -0.148 4.148 28 C -0.143 4.143 29 C -0.141 4.141 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.249 0.751 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.136 0.864 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.155 0.845 48 H 0.160 0.840 49 H 0.162 0.838 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.395 0.318 14.515 16.771 hybrid contribution -0.208 1.615 -0.359 1.668 sum 8.187 1.933 14.156 16.467 Atomic orbital electron populations 1.70109 1.06180 1.25553 1.55433 1.25629 0.95753 1.00331 1.01227 0.85559 0.78491 0.81503 0.77088 1.20100 1.22405 1.21078 1.19328 0.91113 0.83945 1.42681 0.91299 1.44290 1.31762 1.03727 1.53261 1.21239 0.88168 0.96919 0.91342 1.23214 1.00479 0.85290 0.94186 1.87804 1.41095 1.35789 1.66984 1.22992 0.86062 0.99695 0.93386 1.21552 0.93938 0.88323 0.94254 0.94539 1.21078 0.96246 0.91042 0.89889 1.46099 1.12637 1.40266 1.35906 1.21087 0.83220 0.83599 0.82779 1.90613 1.29143 1.57415 1.70487 1.21613 1.00421 0.98102 0.96986 1.20311 0.95482 0.97915 0.96650 1.23361 0.98775 0.99368 0.94078 1.21798 1.01755 0.98379 0.92460 1.19294 0.99473 0.93960 0.94312 1.21562 1.00116 0.93357 1.00260 1.21384 0.99926 0.99837 0.93524 1.21551 0.98668 0.97695 0.96901 1.21432 0.99293 0.93384 1.00210 1.21547 0.99836 1.00454 0.92227 0.94089 0.97534 0.91603 0.87815 0.93878 0.93339 0.86494 0.93422 0.90389 0.75115 0.87107 0.88629 0.91318 0.90820 0.86396 0.85440 0.85589 0.84527 0.83971 0.83753 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.79 11.13 21.65 0.24 -49.55 16 2 C -0.03 -1.66 5.06 84.86 0.43 -1.23 16 3 Si 0.94 41.83 29.57 68.60 2.03 43.85 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.24 -11.65 7.06 84.03 0.59 -11.05 16 8 H 0.07 3.40 5.81 -2.91 -0.02 3.39 16 9 N -0.60 -27.21 3.03 -673.74 -2.04 -29.26 16 10 C 0.15 6.71 5.38 86.36 0.46 7.18 16 11 C 0.05 1.70 6.98 72.08 0.50 2.20 16 12 O -0.40 -14.54 10.74 -148.98 -1.60 -16.14 16 13 C 0.06 1.87 6.29 72.08 0.45 2.33 16 14 C 0.13 4.70 3.21 44.97 0.14 4.84 16 15 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 16 C 0.14 5.04 4.45 86.38 0.38 5.42 16 17 N -0.70 -25.11 3.77 -463.05 -1.75 -26.85 16 18 C 0.51 17.61 7.83 87.66 0.69 18.30 16 19 O -0.59 -23.97 15.98 -3.02 -0.05 -24.01 16 20 C -0.13 -3.60 5.68 29.85 0.17 -3.43 16 21 C -0.07 -1.67 4.95 29.85 0.15 -1.52 16 22 C -0.14 -3.03 8.94 24.53 0.22 -2.81 16 23 C -0.13 -2.61 9.52 23.65 0.23 -2.38 16 24 C -0.07 -1.46 5.87 -20.12 -0.12 -1.58 16 25 C -0.14 -2.75 9.40 22.52 0.21 -2.54 16 26 C -0.13 -2.25 10.03 22.23 0.22 -2.03 16 27 C -0.13 -2.00 10.04 22.32 0.22 -1.78 16 28 C -0.13 -1.92 10.03 22.23 0.22 -1.70 16 29 C -0.12 -2.18 9.79 22.52 0.22 -1.96 16 30 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.07 3.31 6.33 -2.39 -0.02 3.30 16 33 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.05 1.87 7.57 -2.38 -0.02 1.85 16 38 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.41 15.53 7.32 -92.71 -0.68 14.85 16 40 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 43 H 0.07 1.86 7.77 -2.39 -0.02 1.84 16 44 H 0.12 2.47 6.04 -2.91 -0.02 2.45 16 45 H 0.13 2.34 7.87 -2.91 -0.02 2.32 16 46 H 0.13 2.41 6.17 -2.91 -0.02 2.39 16 47 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 48 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 49 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 50 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -61.99 402.83 2.49 -59.50 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.26 Total: 36.21 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.40 Total: 6.25 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -3.55 Total: -105.66 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.65 Total: -40.15 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -61.99 2.49 -59.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733699515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.313 kcal (2) G-P(sol) polarization free energy of solvation -61.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds