Wall clock time and date at job start Wed Apr 1 2020 03:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00150 * 2 1 4 4 H 1.48500 * 109.47113 * 240.00104 * 3 2 1 5 5 H 1.48498 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46933 * 119.99996 * 3 2 1 7 7 C 1.38817 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00145 * 177.76151 * 7 2 1 9 9 N 1.36937 * 119.99864 * 357.76754 * 7 2 1 10 10 C 1.47156 * 120.98097 * 324.91350 * 9 7 2 11 11 C 1.53296 * 108.41670 * 230.54429 * 10 9 7 12 12 O 1.42956 * 109.22447 * 307.67960 * 11 10 9 13 13 C 1.42963 * 114.16528 * 62.58222 * 12 11 10 14 14 C 1.47223 * 121.03529 * 144.94472 * 9 7 2 15 15 H 1.08996 * 109.67388 * 249.19467 * 14 9 7 16 16 C 1.53000 * 109.66663 * 9.72898 * 14 9 7 17 17 N 1.46500 * 109.47586 * 299.25017 * 16 14 9 18 18 C 1.34767 * 120.00774 * 179.97438 * 17 16 14 19 19 O 1.21289 * 119.99859 * 359.97438 * 18 17 16 20 20 C 1.50697 * 120.00690 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47502 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.47306 * 179.97438 * 21 20 18 23 23 C 1.32567 * 119.99925 * 127.78769 * 22 21 20 24 24 C 1.47805 * 120.00170 * 8.42001 * 23 22 21 25 25 C 1.39537 * 120.14230 * 217.15176 * 24 23 22 26 26 C 1.37976 * 119.85361 * 179.75999 * 25 24 23 27 27 C 1.38340 * 120.14323 * 0.48835 * 26 25 24 28 28 C 1.38337 * 120.28814 * 359.76567 * 27 26 25 29 29 C 1.37977 * 120.14257 * 359.97438 * 28 27 26 30 30 H 0.96993 * 120.00027 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.67821 * 110.80618 * 10 9 7 32 32 H 1.08997 * 109.68245 * 350.29121 * 10 9 7 33 33 H 1.09001 * 109.50827 * 67.60799 * 11 10 9 34 34 H 1.09002 * 109.51101 * 187.70454 * 11 10 9 35 35 H 1.09001 * 109.51648 * 57.34019 * 13 12 11 36 36 H 1.09005 * 109.51249 * 177.49448 * 13 12 11 37 37 H 1.09004 * 109.47073 * 59.25039 * 16 14 9 38 38 H 1.09005 * 109.47430 * 179.24861 * 16 14 9 39 39 H 0.97010 * 119.99506 * 359.97438 * 17 16 14 40 40 H 1.09004 * 109.46920 * 300.00056 * 20 18 17 41 41 H 1.08994 * 109.47273 * 59.99886 * 20 18 17 42 42 H 1.08994 * 109.47040 * 299.99965 * 21 20 18 43 43 H 1.08996 * 109.47402 * 59.99968 * 21 20 18 44 44 H 1.08004 * 120.00110 * 307.79254 * 22 21 20 45 45 H 1.08002 * 119.99993 * 188.41228 * 23 22 21 46 46 H 1.07995 * 120.07390 * 359.97243 * 25 24 23 47 47 H 1.08001 * 119.92763 * 180.22883 * 26 25 24 48 48 H 1.08010 * 119.85838 * 179.73625 * 27 26 25 49 49 H 1.07998 * 119.93473 * 179.97438 * 28 27 26 50 50 H 1.08003 * 120.07400 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0896 -1.2026 -0.0360 9 7 1.3264 -2.3876 0.0473 10 6 0.0788 -2.5125 0.8176 11 6 0.1901 -3.7443 1.7232 12 8 0.5642 -4.8763 0.9343 13 6 1.8434 -4.7557 0.3074 14 6 1.8168 -3.5757 -0.6707 15 1 1.1499 -3.8031 -1.5023 16 6 3.2284 -3.3120 -1.1986 17 7 3.1990 -2.1792 -2.1271 18 6 4.3360 -1.7635 -2.7194 19 8 5.3837 -2.3270 -2.4834 20 6 4.3058 -0.5979 -3.6741 21 6 5.7174 -0.3343 -4.2020 22 6 5.6871 0.8309 -5.1572 23 6 6.5189 1.8491 -4.9873 24 6 7.5975 1.7621 -3.9805 25 6 7.9539 2.8874 -3.2364 26 6 8.9583 2.7983 -2.2946 27 6 9.6184 1.5992 -2.0944 28 6 9.2735 0.4811 -2.8325 29 6 8.2673 0.5556 -3.7736 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7631 -2.6330 0.1358 32 1 -0.0672 -1.6207 1.4271 33 1 0.9467 -3.5671 2.4876 34 1 -0.7717 -3.9338 2.2000 35 1 2.6061 -4.5821 1.0666 36 1 2.0709 -5.6733 -0.2352 37 1 3.8910 -3.0810 -0.3645 38 1 3.5936 -4.1981 -1.7180 39 1 2.3610 -1.7283 -2.3156 40 1 3.6434 -0.8287 -4.5084 41 1 3.9406 0.2879 -3.1545 42 1 6.3801 -0.1038 -3.3680 43 1 6.0823 -1.2202 -4.7218 44 1 4.9876 0.8366 -5.9801 45 1 6.4085 2.7421 -5.5846 46 1 7.4423 3.8252 -3.3948 47 1 9.2325 3.6676 -1.7154 48 1 10.4069 1.5357 -1.3589 49 1 9.7930 -0.4520 -2.6718 50 1 7.9992 -0.3179 -4.3496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733699516.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:15 Heat of formation + Delta-G solvation = -31.840422 kcal Electronic energy + Delta-G solvation = -30448.652270 eV Core-core repulsion = 26441.162175 eV Total energy + Delta-G solvation = -4007.490095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.90802 -40.27168 -39.81737 -37.04379 -36.49082 -35.25153 -33.41831 -32.83477 -32.10392 -31.77039 -30.01522 -28.99070 -27.31642 -25.41933 -25.16595 -23.42704 -23.40847 -22.83303 -21.45914 -20.97615 -20.15049 -18.72774 -17.77146 -17.61658 -17.28709 -17.18857 -16.80940 -16.39210 -16.30661 -16.24002 -16.00057 -15.72864 -15.39671 -15.17972 -14.97394 -14.61467 -14.43237 -14.35654 -14.23903 -13.78362 -13.50810 -13.41205 -13.07598 -13.04998 -12.78566 -12.72212 -12.60326 -12.50062 -12.18736 -12.10434 -11.99447 -11.89700 -11.88943 -11.59111 -11.32745 -10.92122 -10.67481 -10.57692 -10.51861 -9.82278 -9.78516 -9.12383 -8.56315 -7.87575 -5.43236 0.11170 0.49288 1.40304 1.45275 1.45628 1.49295 1.77925 2.40220 2.48867 2.93257 3.03657 3.28880 3.45157 3.78815 3.88292 4.02225 4.03345 4.05363 4.12764 4.20284 4.24466 4.28442 4.31354 4.41828 4.47988 4.56980 4.59288 4.61567 4.64650 4.65884 4.69286 4.73864 4.78616 4.99144 5.01382 5.07854 5.13161 5.14246 5.23509 5.31893 5.44948 5.51199 5.60615 5.61530 5.66563 5.68735 5.70746 5.90623 6.11376 6.30012 6.39808 6.75461 7.11841 7.39058 7.75223 8.33822 9.16072 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.003053 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.367855 B = 9168.703591 C =10011.301144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.025 4.025 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.062 0.938 9 N -0.606 5.606 10 C 0.149 3.851 11 C 0.045 3.955 12 O -0.397 6.397 13 C 0.057 3.943 14 C 0.127 3.873 15 H 0.039 0.961 16 C 0.143 3.857 17 N -0.698 5.698 18 C 0.505 3.495 19 O -0.592 6.592 20 C -0.132 4.132 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.074 4.074 25 C -0.126 4.126 26 C -0.132 4.132 27 C -0.131 4.131 28 C -0.136 4.136 29 C -0.120 4.120 30 H 0.251 0.749 31 H 0.007 0.993 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.104 0.896 35 H 0.047 0.953 36 H 0.118 0.882 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.411 0.589 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.136 0.864 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.133 0.867 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.272 1.071 -8.208 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.222 4.222 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.079 0.921 9 N -0.332 5.332 10 C 0.024 3.976 11 C -0.033 4.033 12 O -0.316 6.316 13 C -0.022 4.022 14 C 0.021 3.979 15 H 0.056 0.944 16 C 0.018 3.982 17 N -0.348 5.348 18 C 0.292 3.708 19 O -0.475 6.475 20 C -0.172 4.172 21 C -0.122 4.122 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.074 4.074 25 C -0.144 4.144 26 C -0.150 4.150 27 C -0.149 4.149 28 C -0.154 4.154 29 C -0.137 4.137 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.248 0.752 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.161 0.839 45 H 0.159 0.841 46 H 0.154 0.846 47 H 0.160 0.840 48 H 0.158 0.842 49 H 0.151 0.849 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.756 0.648 -8.055 14.265 hybrid contribution -0.174 1.539 0.344 1.587 sum 11.582 2.187 -7.711 14.085 Atomic orbital electron populations 1.70046 1.06117 1.25727 1.55081 1.25700 0.95804 1.00126 1.00589 0.85785 0.77873 0.81040 0.78385 1.19369 1.21962 1.21897 1.19098 0.90029 0.83324 1.44683 0.92058 1.44271 1.26248 1.07468 1.55263 1.21259 0.87411 0.95814 0.93119 1.23235 1.00246 0.86863 0.92955 1.87800 1.36642 1.40655 1.66496 1.22994 0.85009 0.98827 0.95348 1.21565 0.93429 0.88924 0.94025 0.94380 1.21064 0.95993 0.88944 0.92154 1.46062 1.11089 1.33692 1.43921 1.21064 0.83063 0.85154 0.81475 1.90609 1.31611 1.59470 1.65766 1.21626 1.00342 0.96072 0.99170 1.20779 0.95258 0.97736 0.98406 1.23429 0.99212 0.94261 0.98331 1.21867 0.95363 0.99599 0.98461 1.19368 0.96838 0.93782 0.97458 1.21559 0.97812 0.98596 0.96439 1.21410 0.96386 0.98734 0.98446 1.21512 1.00586 0.92961 0.99803 1.21379 0.97865 0.99470 0.96693 1.21611 0.95870 0.97277 0.98977 0.93950 0.97510 0.91448 0.94059 0.87791 0.93508 0.86447 0.93687 0.90349 0.75209 0.86402 0.89773 0.91421 0.90301 0.83939 0.84089 0.84599 0.84020 0.84215 0.84945 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.86 10.97 21.65 0.24 -49.62 16 2 C -0.03 -1.28 5.22 84.86 0.44 -0.84 16 3 Si 0.94 42.40 29.55 68.60 2.03 44.43 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 7 C -0.24 -11.86 6.91 84.03 0.58 -11.28 16 8 H 0.06 3.12 6.01 -2.91 -0.02 3.10 16 9 N -0.61 -27.68 3.03 -673.55 -2.04 -29.72 16 10 C 0.15 6.79 5.35 86.35 0.46 7.26 16 11 C 0.04 1.67 6.98 72.08 0.50 2.17 16 12 O -0.40 -14.62 10.74 -148.98 -1.60 -16.22 16 13 C 0.06 1.88 6.29 72.08 0.45 2.34 16 14 C 0.13 4.79 3.21 44.95 0.14 4.94 16 15 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 16 C 0.14 5.16 4.45 86.38 0.38 5.54 16 17 N -0.70 -25.55 3.85 -463.06 -1.78 -27.34 16 18 C 0.50 18.10 7.83 87.66 0.69 18.79 16 19 O -0.59 -24.36 15.98 -3.06 -0.05 -24.40 16 20 C -0.13 -3.80 5.68 29.85 0.17 -3.63 16 21 C -0.08 -2.25 3.23 29.85 0.10 -2.15 16 22 C -0.13 -2.86 9.45 24.53 0.23 -2.62 16 23 C -0.14 -2.90 9.79 23.65 0.23 -2.67 16 24 C -0.07 -1.86 5.16 -20.12 -0.10 -1.96 16 25 C -0.13 -2.93 9.79 22.52 0.22 -2.70 16 26 C -0.13 -2.86 10.03 22.23 0.22 -2.64 16 27 C -0.13 -2.88 10.04 22.32 0.22 -2.66 16 28 C -0.14 -3.29 10.03 22.23 0.22 -3.07 16 29 C -0.12 -3.08 7.32 22.52 0.16 -2.91 16 30 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 31 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.07 3.43 6.36 -2.39 -0.02 3.41 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.12 3.10 8.14 -2.38 -0.02 3.08 16 37 H 0.04 1.81 7.54 -2.38 -0.02 1.79 16 38 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 39 H 0.41 15.74 7.33 -92.70 -0.68 15.06 16 40 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 41 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.07 2.12 4.81 -2.39 -0.01 2.11 16 43 H 0.08 2.05 7.91 -2.39 -0.02 2.03 16 44 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 45 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 46 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 47 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 48 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 49 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 50 H 0.13 3.17 6.27 -2.91 -0.02 3.15 16 Total: -1.00 -62.91 398.39 2.38 -60.52 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: 0.26 Total: 40.45 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 5.34 Total: 1.90 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -3.59 Total: -106.68 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.65 Total: -40.63 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -62.91 2.38 -60.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733699516.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.682 kcal (2) G-P(sol) polarization free energy of solvation -62.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds