Wall clock time and date at job start Wed Apr 1 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00107 * 2 1 4 4 H 1.48504 * 109.46943 * 92.09423 * 3 2 1 5 5 H 1.48502 * 109.47484 * 212.09447 * 3 2 1 6 6 H 1.48501 * 109.47237 * 332.10212 * 3 2 1 7 7 C 1.38812 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00173 * 34.54317 * 7 2 1 9 9 N 1.36935 * 119.99806 * 214.54952 * 7 2 1 10 10 C 1.47150 * 120.98224 * 13.72833 * 9 7 2 11 11 C 1.53300 * 108.38556 * 129.44402 * 10 9 7 12 12 O 1.42963 * 109.22111 * 52.30007 * 11 10 9 13 13 C 1.42960 * 114.16578 * 297.41871 * 12 11 10 14 14 C 1.47156 * 120.98035 * 193.44429 * 9 7 2 15 15 H 1.09002 * 109.67372 * 110.83531 * 14 9 7 16 16 C 1.52997 * 109.68137 * 350.28432 * 14 9 7 17 17 N 1.46498 * 109.47210 * 61.82870 * 16 14 9 18 18 C 1.34780 * 119.99825 * 179.97438 * 17 16 14 19 19 O 1.21281 * 120.00369 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99824 * 180.02562 * 18 17 16 21 21 C 1.53001 * 109.46846 * 173.94199 * 20 18 17 22 22 C 1.50696 * 115.55230 * 304.90951 * 21 20 18 23 23 C 1.38237 * 120.00158 * 129.17720 * 22 21 20 24 24 C 1.38232 * 119.99907 * 179.76707 * 23 22 21 25 25 C 1.38231 * 120.00019 * 0.48668 * 24 23 22 26 26 C 1.38237 * 120.00109 * 359.79015 * 25 24 23 27 27 C 1.38229 * 120.00102 * 359.95829 * 26 25 24 28 28 C 1.53001 * 117.49876 * 159.23824 * 21 20 18 29 29 C 1.53001 * 117.49828 * 90.58057 * 21 20 18 30 30 H 0.97001 * 119.99733 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.67875 * 249.16794 * 10 9 7 32 32 H 1.08996 * 109.68528 * 9.68059 * 10 9 7 33 33 H 1.08994 * 109.51327 * 172.22735 * 11 10 9 34 34 H 1.08998 * 109.51030 * 292.32533 * 11 10 9 35 35 H 1.09008 * 109.51346 * 182.50211 * 13 12 11 36 36 H 1.08997 * 109.51548 * 302.60604 * 13 12 11 37 37 H 1.09002 * 109.47191 * 181.83271 * 16 14 9 38 38 H 1.08995 * 109.47143 * 301.82863 * 16 14 9 39 39 H 0.96993 * 120.00485 * 0.02562 * 17 16 14 40 40 H 1.08999 * 109.46796 * 293.93849 * 20 18 17 41 41 H 1.08998 * 109.47320 * 53.93943 * 20 18 17 42 42 H 1.07998 * 120.00184 * 0.02562 * 23 22 21 43 43 H 1.08003 * 119.99861 * 180.26155 * 24 23 22 44 44 H 1.08001 * 120.00189 * 179.77085 * 25 24 23 45 45 H 1.08002 * 120.00029 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.00528 * 180.02562 * 27 26 25 47 47 H 1.09006 * 117.49542 * 359.97438 * 28 21 20 48 48 H 1.08997 * 117.50227 * 145.01584 * 28 21 20 49 49 H 1.09004 * 117.50144 * 214.97634 * 29 21 20 50 50 H 1.09001 * 117.49891 * 359.97404 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5421 2.0208 1.3992 5 1 3.5250 1.4534 -0.7439 6 1 1.4262 2.6651 -0.6551 7 6 2.0103 -1.2021 -0.0005 8 1 1.6131 -2.0548 -0.5313 9 7 3.1985 -1.3070 0.6720 10 6 3.6151 -0.2786 1.6385 11 6 4.0147 -0.9758 2.9441 12 8 4.9687 -2.0012 2.6572 13 6 4.4723 -3.0428 1.8132 14 6 4.0936 -2.4545 0.4540 15 1 4.9942 -2.1242 -0.0638 16 6 3.3767 -3.5154 -0.3834 17 7 3.0363 -2.9556 -1.6937 18 6 2.3959 -3.7144 -2.6050 19 8 2.1018 -4.8610 -2.3406 20 6 2.0463 -3.1387 -3.9531 21 6 1.4671 -4.2400 -4.8434 22 6 2.3327 -5.4620 -5.0119 23 6 1.8022 -6.7201 -4.7954 24 6 2.5949 -7.8412 -4.9547 25 6 3.9208 -7.7039 -5.3206 26 6 4.4529 -6.4456 -5.5315 27 6 3.6588 -5.3247 -5.3773 28 6 0.6152 -3.8075 -6.0384 29 6 -0.0487 -4.4463 -4.8161 30 1 -0.4850 0.8401 -0.0004 31 1 4.4667 0.2743 1.2420 32 1 2.7879 0.4060 1.8256 33 1 4.4560 -0.2481 3.6251 34 1 3.1318 -1.4177 3.4058 35 1 5.2430 -3.8023 1.6805 36 1 3.5918 -3.4937 2.2708 37 1 4.0308 -4.3773 -0.5153 38 1 2.4650 -3.8260 0.1269 39 1 3.2724 -2.0390 -1.9057 40 1 1.3085 -2.3460 -3.8293 41 1 2.9438 -2.7304 -4.4177 42 1 0.7672 -6.8272 -4.5059 43 1 2.1793 -8.8243 -4.7897 44 1 4.5412 -8.5796 -5.4415 45 1 5.4889 -6.3383 -5.8171 46 1 4.0743 -4.3416 -5.5425 47 1 0.4671 -2.7382 -6.1901 48 1 0.6806 -4.4069 -6.9464 49 1 -0.4199 -5.4659 -4.9204 50 1 -0.6332 -3.7977 -4.1636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733704240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:34 Heat of formation + Delta-G solvation = 16.430931 kcal Electronic energy + Delta-G solvation = -31208.538679 eV Core-core repulsion = 27203.141787 eV Total energy + Delta-G solvation = -4005.396892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.10763 -39.13078 -38.32796 -36.84625 -35.39542 -33.65989 -31.82783 -31.13114 -30.86029 -30.40707 -29.16623 -27.48989 -25.32082 -23.51904 -23.14456 -22.90255 -22.19074 -21.69632 -20.21886 -19.87401 -19.04402 -17.24960 -16.91834 -16.22779 -16.08190 -15.86377 -15.35512 -15.19409 -14.91160 -14.70202 -14.59899 -14.42378 -14.18232 -13.98900 -13.72120 -13.45587 -13.28874 -12.88932 -12.60252 -12.45594 -12.32098 -12.13934 -11.90517 -11.87594 -11.47446 -11.41444 -11.15817 -10.99240 -10.89250 -10.73550 -10.56650 -10.39881 -10.30201 -9.89746 -9.82315 -9.63157 -9.42967 -9.23175 -8.76408 -8.51710 -8.41306 -8.24208 -7.23891 -6.09723 -3.29065 1.50201 1.56318 3.21010 3.27360 3.42248 3.42915 3.59292 3.85673 4.10730 4.30033 4.43610 4.60491 4.64092 4.83918 4.90076 5.03420 5.09958 5.15649 5.16563 5.22400 5.42833 5.46632 5.53506 5.60567 5.64555 5.68717 5.73907 5.76500 5.81025 5.84194 5.90737 5.92424 5.95673 6.02426 6.06932 6.12952 6.15855 6.19256 6.25145 6.25814 6.37832 6.53857 6.61490 6.63464 6.73076 6.81027 7.09319 7.14586 7.59900 7.68626 8.15250 8.22170 8.76869 8.88054 9.60214 9.93988 11.02548 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.003473 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.164011 B = 8060.418331 C = 9466.598964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.030 3.970 3 Si 0.852 3.148 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.302 1.302 7 C -0.279 4.279 8 H 0.111 0.889 9 N -0.603 5.603 10 C 0.092 3.908 11 C 0.046 3.954 12 O -0.389 6.389 13 C 0.054 3.946 14 C 0.131 3.869 15 H 0.044 0.956 16 C 0.137 3.863 17 N -0.705 5.705 18 C 0.513 3.487 19 O -0.543 6.543 20 C -0.102 4.102 21 C -0.070 4.070 22 C -0.016 4.016 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.167 4.167 29 C -0.162 4.162 30 H 0.262 0.738 31 H 0.030 0.970 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.409 0.591 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.292 -8.885 -9.216 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.170 4.170 3 Si 0.682 3.318 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.230 1.230 7 C -0.405 4.405 8 H 0.128 0.872 9 N -0.329 5.329 10 C -0.033 4.033 11 C -0.032 4.032 12 O -0.307 6.307 13 C -0.025 4.025 14 C 0.024 3.976 15 H 0.061 0.939 16 C 0.013 3.987 17 N -0.357 5.357 18 C 0.299 3.701 19 O -0.421 6.421 20 C -0.142 4.142 21 C -0.070 4.070 22 C -0.016 4.016 23 C -0.115 4.115 24 C -0.139 4.139 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.136 4.136 28 C -0.204 4.204 29 C -0.198 4.198 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.246 0.754 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.117 0.883 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.087 -9.625 -8.978 14.502 hybrid contribution 0.321 1.751 -0.047 1.781 sum 6.407 -7.874 -9.025 13.583 Atomic orbital electron populations 1.70082 1.05814 1.26711 1.49643 1.24923 0.94745 0.97232 1.00126 0.87535 0.80584 0.86380 0.77328 1.21449 1.20118 1.23037 1.19253 0.93678 0.97963 1.29652 0.87190 1.44491 1.21012 1.21631 1.45756 1.22036 0.99199 0.92474 0.89640 1.23067 0.92355 0.90251 0.97532 1.87821 1.39255 1.35157 1.68501 1.22835 0.99100 0.89495 0.91038 1.21296 0.93166 0.88894 0.94253 0.93854 1.21129 0.99690 0.94576 0.83346 1.46003 1.58898 1.16610 1.14162 1.20303 0.77845 0.86085 0.85913 1.90661 1.53703 1.17892 1.79830 1.21185 1.02711 0.97576 0.92752 1.19714 0.92131 0.95116 1.00083 1.18824 0.93272 0.92701 0.96838 1.20961 1.00160 0.91829 0.98527 1.21067 0.94259 0.98365 1.00249 1.21036 0.95505 0.97157 1.01221 1.21017 0.99356 0.92685 1.00941 1.20891 0.93534 0.98505 1.00627 1.23127 1.03324 1.01428 0.92522 1.23075 0.94066 1.02223 1.00484 0.92780 0.95256 0.89477 0.89764 0.92916 0.89413 0.92872 0.92253 0.90982 0.75433 0.88023 0.89197 0.86232 0.86533 0.86680 0.86547 0.86567 0.88335 0.88757 0.88594 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.08 13.97 55.49 0.78 -24.30 16 2 C 0.03 0.79 5.08 -17.43 -0.09 0.70 16 3 Si 0.85 20.34 24.85 -169.99 -4.22 16.11 16 4 H -0.29 -6.65 6.23 56.52 0.35 -6.30 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16 7 C -0.28 -6.92 8.09 -15.06 -0.12 -7.04 16 8 H 0.11 2.87 5.21 -52.49 -0.27 2.59 16 9 N -0.60 -13.13 2.96 -164.54 -0.49 -13.62 16 10 C 0.09 1.92 4.53 -3.53 -0.02 1.91 16 11 C 0.05 0.83 6.99 37.31 0.26 1.09 16 12 O -0.39 -7.04 10.74 -35.23 -0.38 -7.42 16 13 C 0.05 0.90 6.27 37.09 0.23 1.13 16 14 C 0.13 2.39 3.18 -67.64 -0.21 2.18 16 15 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 16 C 0.14 2.46 4.41 -4.04 -0.02 2.44 16 17 N -0.70 -12.57 3.48 -60.30 -0.21 -12.78 16 18 C 0.51 9.09 7.58 -10.98 -0.08 9.01 16 19 O -0.54 -11.03 14.78 5.56 0.08 -10.95 16 20 C -0.10 -1.47 5.34 -27.88 -0.15 -1.62 16 21 C -0.07 -0.95 1.57 -155.66 -0.24 -1.19 16 22 C -0.02 -0.23 3.75 -104.62 -0.39 -0.62 16 23 C -0.10 -1.35 9.09 -39.58 -0.36 -1.71 16 24 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 25 C -0.13 -1.55 10.05 -39.58 -0.40 -1.94 16 26 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 27 C -0.12 -1.54 9.41 -39.58 -0.37 -1.91 16 28 C -0.17 -1.88 9.96 -26.69 -0.27 -2.14 16 29 C -0.16 -2.10 9.50 -26.69 -0.25 -2.35 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.03 0.61 7.66 -51.93 -0.40 0.22 16 32 H 0.09 1.99 3.91 -51.93 -0.20 1.78 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.05 0.91 8.13 -51.93 -0.42 0.48 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.48 7.68 -51.93 -0.40 1.08 16 39 H 0.41 7.32 7.43 -40.82 -0.30 7.02 16 40 H 0.10 1.48 8.09 -51.93 -0.42 1.06 16 41 H 0.09 1.10 7.67 -51.93 -0.40 0.70 16 42 H 0.12 1.60 6.27 -52.49 -0.33 1.27 16 43 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.12 1.35 7.57 -52.49 -0.40 0.96 16 47 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.10 1.16 6.42 -51.93 -0.33 0.83 16 50 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -30.64 389.76 -9.56 -40.20 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -7.71 Total: 12.73 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -3.28 Total: -5.85 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.08 Total: -50.70 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.30 Total: -18.37 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.22 Total: 16.11 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.64 -9.56 -40.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733704240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.634 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds