Wall clock time and date at job start Wed Apr 1 2020 02:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00107 * 2 1 4 4 H 1.48504 * 109.46943 * 92.09423 * 3 2 1 5 5 H 1.48502 * 109.47484 * 212.09447 * 3 2 1 6 6 H 1.48501 * 109.47237 * 332.10212 * 3 2 1 7 7 C 1.38812 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00173 * 34.54317 * 7 2 1 9 9 N 1.36935 * 119.99806 * 214.54952 * 7 2 1 10 10 C 1.47150 * 120.98224 * 13.72833 * 9 7 2 11 11 C 1.53300 * 108.38556 * 129.44402 * 10 9 7 12 12 O 1.42963 * 109.22111 * 52.30007 * 11 10 9 13 13 C 1.42960 * 114.16578 * 297.41871 * 12 11 10 14 14 C 1.47156 * 120.98035 * 193.44429 * 9 7 2 15 15 H 1.09002 * 109.67372 * 110.83531 * 14 9 7 16 16 C 1.52997 * 109.68137 * 350.28432 * 14 9 7 17 17 N 1.46498 * 109.47210 * 61.82870 * 16 14 9 18 18 C 1.34780 * 119.99825 * 179.97438 * 17 16 14 19 19 O 1.21281 * 120.00369 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99824 * 180.02562 * 18 17 16 21 21 C 1.53001 * 109.46846 * 173.94199 * 20 18 17 22 22 C 1.50696 * 115.55230 * 304.90951 * 21 20 18 23 23 C 1.38237 * 120.00158 * 129.17720 * 22 21 20 24 24 C 1.38232 * 119.99907 * 179.76707 * 23 22 21 25 25 C 1.38231 * 120.00019 * 0.48668 * 24 23 22 26 26 C 1.38237 * 120.00109 * 359.79015 * 25 24 23 27 27 C 1.38229 * 120.00102 * 359.95829 * 26 25 24 28 28 C 1.53001 * 117.49876 * 159.23824 * 21 20 18 29 29 C 1.53001 * 117.49828 * 90.58057 * 21 20 18 30 30 H 0.97001 * 119.99733 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.67875 * 249.16794 * 10 9 7 32 32 H 1.08996 * 109.68528 * 9.68059 * 10 9 7 33 33 H 1.08994 * 109.51327 * 172.22735 * 11 10 9 34 34 H 1.08998 * 109.51030 * 292.32533 * 11 10 9 35 35 H 1.09008 * 109.51346 * 182.50211 * 13 12 11 36 36 H 1.08997 * 109.51548 * 302.60604 * 13 12 11 37 37 H 1.09002 * 109.47191 * 181.83271 * 16 14 9 38 38 H 1.08995 * 109.47143 * 301.82863 * 16 14 9 39 39 H 0.96993 * 120.00485 * 0.02562 * 17 16 14 40 40 H 1.08999 * 109.46796 * 293.93849 * 20 18 17 41 41 H 1.08998 * 109.47320 * 53.93943 * 20 18 17 42 42 H 1.07998 * 120.00184 * 0.02562 * 23 22 21 43 43 H 1.08003 * 119.99861 * 180.26155 * 24 23 22 44 44 H 1.08001 * 120.00189 * 179.77085 * 25 24 23 45 45 H 1.08002 * 120.00029 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.00528 * 180.02562 * 27 26 25 47 47 H 1.09006 * 117.49542 * 359.97438 * 28 21 20 48 48 H 1.08997 * 117.50227 * 145.01584 * 28 21 20 49 49 H 1.09004 * 117.50144 * 214.97634 * 29 21 20 50 50 H 1.09001 * 117.49891 * 359.97404 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5421 2.0208 1.3992 5 1 3.5250 1.4534 -0.7439 6 1 1.4262 2.6651 -0.6551 7 6 2.0103 -1.2021 -0.0005 8 1 1.6131 -2.0548 -0.5313 9 7 3.1985 -1.3070 0.6720 10 6 3.6151 -0.2786 1.6385 11 6 4.0147 -0.9758 2.9441 12 8 4.9687 -2.0012 2.6572 13 6 4.4723 -3.0428 1.8132 14 6 4.0936 -2.4545 0.4540 15 1 4.9942 -2.1242 -0.0638 16 6 3.3767 -3.5154 -0.3834 17 7 3.0363 -2.9556 -1.6937 18 6 2.3959 -3.7144 -2.6050 19 8 2.1018 -4.8610 -2.3406 20 6 2.0463 -3.1387 -3.9531 21 6 1.4671 -4.2400 -4.8434 22 6 2.3327 -5.4620 -5.0119 23 6 1.8022 -6.7201 -4.7954 24 6 2.5949 -7.8412 -4.9547 25 6 3.9208 -7.7039 -5.3206 26 6 4.4529 -6.4456 -5.5315 27 6 3.6588 -5.3247 -5.3773 28 6 0.6152 -3.8075 -6.0384 29 6 -0.0487 -4.4463 -4.8161 30 1 -0.4850 0.8401 -0.0004 31 1 4.4667 0.2743 1.2420 32 1 2.7879 0.4060 1.8256 33 1 4.4560 -0.2481 3.6251 34 1 3.1318 -1.4177 3.4058 35 1 5.2430 -3.8023 1.6805 36 1 3.5918 -3.4937 2.2708 37 1 4.0308 -4.3773 -0.5153 38 1 2.4650 -3.8260 0.1269 39 1 3.2724 -2.0390 -1.9057 40 1 1.3085 -2.3460 -3.8293 41 1 2.9438 -2.7304 -4.4177 42 1 0.7672 -6.8272 -4.5059 43 1 2.1793 -8.8243 -4.7897 44 1 4.5412 -8.5796 -5.4415 45 1 5.4889 -6.3383 -5.8171 46 1 4.0743 -4.3416 -5.5425 47 1 0.4671 -2.7382 -6.1901 48 1 0.6806 -4.4069 -6.9464 49 1 -0.4199 -5.4659 -4.9204 50 1 -0.6332 -3.7977 -4.1636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733704240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:33 Heat of formation + Delta-G solvation = -1.575890 kcal Electronic energy + Delta-G solvation = -31209.319513 eV Core-core repulsion = 27203.141787 eV Total energy + Delta-G solvation = -4006.177726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.29693 -40.50425 -39.64525 -37.88491 -36.94109 -35.30740 -33.58541 -32.68519 -31.85850 -31.34808 -30.38202 -29.17455 -26.74443 -25.27841 -24.23149 -23.84322 -23.64892 -22.65840 -21.60138 -21.43345 -20.17741 -18.84084 -18.11285 -17.71519 -17.56574 -17.27690 -16.80183 -16.57318 -16.10319 -16.07838 -15.82886 -15.66874 -15.53595 -15.35561 -15.07683 -14.78473 -14.35102 -14.29329 -14.22495 -13.97393 -13.51572 -13.48148 -13.39694 -13.03417 -12.87179 -12.79805 -12.40538 -12.36928 -12.28071 -11.99516 -11.93269 -11.85926 -11.49499 -11.40289 -11.28568 -11.17158 -10.92644 -10.65920 -10.32698 -9.79852 -9.72030 -9.36446 -9.05481 -8.11830 -5.27267 0.55408 0.60373 1.31200 1.46571 1.51820 1.86024 2.32003 2.47346 2.76581 2.86179 2.98176 3.09932 3.27571 3.65241 3.78972 3.83949 3.93927 3.94727 4.11026 4.20055 4.21369 4.22431 4.27237 4.32766 4.41158 4.45424 4.48069 4.57850 4.60608 4.66622 4.68844 4.70912 4.74609 4.79761 4.86404 4.91181 4.93865 4.96424 5.04190 5.21109 5.22080 5.26267 5.27185 5.64110 5.67519 5.69329 5.81486 5.83682 6.17602 6.19652 6.21880 6.74444 6.86999 7.45658 7.65592 8.02536 9.03668 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.003473 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.164011 B = 8060.418331 C = 9466.598964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.023 4.023 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.318 1.318 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.615 5.615 10 C 0.086 3.914 11 C 0.053 3.947 12 O -0.389 6.389 13 C 0.056 3.944 14 C 0.132 3.868 15 H 0.058 0.942 16 C 0.144 3.856 17 N -0.706 5.706 18 C 0.508 3.492 19 O -0.571 6.571 20 C -0.098 4.098 21 C -0.082 4.082 22 C -0.029 4.029 23 C -0.121 4.121 24 C -0.130 4.130 25 C -0.136 4.136 26 C -0.126 4.126 27 C -0.132 4.132 28 C -0.141 4.141 29 C -0.177 4.177 30 H 0.258 0.742 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.045 0.955 35 H 0.124 0.876 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.409 0.591 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.133 0.867 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.128 0.872 47 H 0.111 0.889 48 H 0.107 0.893 49 H 0.098 0.902 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.181 -9.206 -9.713 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.218 4.218 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.247 1.247 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.342 5.342 10 C -0.039 4.039 11 C -0.025 4.025 12 O -0.307 6.307 13 C -0.023 4.023 14 C 0.026 3.974 15 H 0.076 0.924 16 C 0.020 3.980 17 N -0.357 5.357 18 C 0.296 3.704 19 O -0.451 6.451 20 C -0.137 4.137 21 C -0.083 4.083 22 C -0.029 4.029 23 C -0.139 4.139 24 C -0.148 4.148 25 C -0.154 4.154 26 C -0.144 4.144 27 C -0.150 4.150 28 C -0.178 4.178 29 C -0.214 4.214 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.063 0.937 35 H 0.142 0.858 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.245 0.755 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.151 0.849 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.146 0.854 47 H 0.129 0.871 48 H 0.126 0.874 49 H 0.117 0.883 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.036 -9.946 -9.460 16.434 hybrid contribution -0.540 1.719 0.125 1.806 sum 8.496 -8.227 -9.335 15.067 Atomic orbital electron populations 1.70181 1.07339 1.26878 1.53431 1.25359 0.95056 0.99818 1.01613 0.86608 0.79154 0.82779 0.77599 1.20399 1.19368 1.24681 1.19215 0.94065 0.96917 1.27590 0.89098 1.44633 1.20882 1.22870 1.45792 1.22104 0.98554 0.92386 0.90903 1.23024 0.92573 0.90677 0.96272 1.87835 1.39166 1.35205 1.68540 1.22939 1.00131 0.89707 0.89502 1.21482 0.92718 0.87647 0.95563 0.92409 1.21029 0.98512 0.95232 0.83257 1.46036 1.58958 1.16570 1.14162 1.20884 0.76966 0.85713 0.86858 1.90642 1.54690 1.19230 1.80561 1.21195 1.03675 0.97644 0.91200 1.19750 0.92063 0.95151 1.01288 1.18936 0.93905 0.92661 0.97421 1.21093 1.00334 0.92672 0.99765 1.21354 0.94768 0.98760 0.99951 1.21388 0.95423 0.98189 1.00376 1.21372 1.00446 0.92444 1.00100 1.21124 0.93337 0.99587 1.00903 1.23181 1.00458 1.02177 0.91934 1.23066 0.94038 1.02412 1.01882 0.93321 0.94507 0.91543 0.86676 0.93691 0.85814 0.93666 0.90298 0.94235 0.75463 0.88525 0.86710 0.86952 0.84875 0.84134 0.84158 0.85445 0.87116 0.87431 0.88321 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.97 21.65 0.30 -54.52 16 2 C -0.02 -1.20 5.08 84.86 0.43 -0.77 16 3 Si 0.91 42.35 24.85 68.60 1.70 44.05 16 4 H -0.28 -12.30 6.23 99.48 0.62 -11.68 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.32 -15.49 7.11 99.48 0.71 -14.78 16 7 C -0.25 -12.47 8.09 84.03 0.68 -11.79 16 8 H 0.09 4.86 5.21 -2.91 -0.02 4.85 16 9 N -0.62 -26.14 2.96 -674.50 -2.00 -28.14 16 10 C 0.09 3.42 4.53 86.36 0.39 3.81 16 11 C 0.05 1.76 6.99 72.08 0.50 2.27 16 12 O -0.39 -12.83 10.74 -148.98 -1.60 -14.43 16 13 C 0.06 1.70 6.27 71.94 0.45 2.15 16 14 C 0.13 4.56 3.18 44.82 0.14 4.70 16 15 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 16 C 0.14 5.08 4.41 86.38 0.38 5.46 16 17 N -0.71 -24.98 3.48 -463.06 -1.61 -26.59 16 18 C 0.51 18.12 7.58 87.66 0.66 18.79 16 19 O -0.57 -23.63 14.78 -3.03 -0.04 -23.67 16 20 C -0.10 -2.78 5.34 29.85 0.16 -2.62 16 21 C -0.08 -2.20 1.57 -52.93 -0.08 -2.28 16 22 C -0.03 -0.80 3.75 -19.86 -0.07 -0.88 16 23 C -0.12 -3.36 9.09 22.27 0.20 -3.16 16 24 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 25 C -0.14 -2.93 10.05 22.27 0.22 -2.71 16 26 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 27 C -0.13 -3.24 9.41 22.27 0.21 -3.04 16 28 C -0.14 -3.03 9.96 30.62 0.30 -2.72 16 29 C -0.18 -4.72 9.50 30.62 0.29 -4.43 16 30 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.04 1.43 7.66 -2.39 -0.02 1.41 16 32 H 0.07 2.95 3.91 -2.39 -0.01 2.94 16 33 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 36 H 0.04 1.47 8.13 -2.39 -0.02 1.45 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.04 1.65 7.68 -2.39 -0.02 1.63 16 39 H 0.41 14.40 7.43 -92.71 -0.69 13.71 16 40 H 0.10 2.85 8.09 -2.39 -0.02 2.83 16 41 H 0.11 2.64 7.67 -2.39 -0.02 2.62 16 42 H 0.11 3.15 6.27 -2.91 -0.02 3.13 16 43 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 44 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 46 H 0.13 2.72 7.57 -2.91 -0.02 2.70 16 47 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 48 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.10 2.51 6.42 -2.38 -0.02 2.49 16 50 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -66.80 389.76 2.25 -64.54 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: 0.17 Total: 41.43 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.33 Total: -2.67 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -3.31 Total: -109.25 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.65 Total: -38.10 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.70 Total: 44.05 kcal Total: -66.80 2.25 -64.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733704240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.968 kcal (2) G-P(sol) polarization free energy of solvation -66.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds