Wall clock time and date at job start Wed Apr 1 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 119.99622 * 2 1 4 4 H 1.48504 * 109.47009 * 240.00054 * 3 2 1 5 5 H 1.48501 * 109.47401 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47084 * 120.00123 * 3 2 1 7 7 C 1.38808 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99598 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00488 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00403 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47470 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.51590 * 305.00538 * 11 10 9 13 13 C 1.53291 * 109.51147 * 184.89686 * 11 10 9 14 14 N 1.47161 * 108.38186 * 187.72392 * 13 11 10 15 15 C 1.34778 * 120.98205 * 230.51368 * 14 13 11 16 16 O 1.21275 * 120.00065 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99889 * 180.02562 * 15 14 13 18 18 C 1.52993 * 109.46879 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46879 * 179.97438 * 18 17 15 20 20 C 1.32570 * 120.00386 * 127.48190 * 19 18 17 21 21 C 1.47814 * 119.99360 * 7.58696 * 20 19 18 22 22 C 1.39543 * 120.13639 * 218.60316 * 21 20 19 23 23 C 1.37975 * 119.85243 * 179.76645 * 22 21 20 24 24 C 1.38345 * 120.14490 * 0.49091 * 23 22 21 25 25 C 1.38347 * 120.28331 * 359.76429 * 24 23 22 26 26 C 1.37979 * 120.14245 * 359.97438 * 25 24 23 27 27 C 1.47153 * 118.03400 * 50.54169 * 14 13 11 28 28 C 1.53299 * 108.38435 * 309.45885 * 27 14 13 29 29 O 1.42966 * 109.54888 * 65.12817 * 11 10 9 30 30 H 0.96995 * 120.00268 * 359.97438 * 1 2 3 31 31 H 0.97006 * 120.00066 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46910 * 59.99877 * 10 9 7 33 33 H 1.08997 * 109.47170 * 300.00556 * 10 9 7 34 34 H 1.08997 * 109.68721 * 307.44793 * 13 11 10 35 35 H 1.09006 * 109.68081 * 67.97149 * 13 11 10 36 36 H 1.09007 * 109.46708 * 299.99989 * 17 15 14 37 37 H 1.08992 * 109.47197 * 59.99952 * 17 15 14 38 38 H 1.09000 * 109.47455 * 299.99509 * 18 17 15 39 39 H 1.09000 * 109.47612 * 60.00136 * 18 17 15 40 40 H 1.08006 * 120.00154 * 307.47710 * 19 18 17 41 41 H 1.07993 * 120.00180 * 187.59049 * 20 19 18 42 42 H 1.08004 * 120.07487 * 359.97438 * 22 21 20 43 43 H 1.08000 * 119.92499 * 180.23701 * 23 22 21 44 44 H 1.07992 * 119.85766 * 179.74585 * 24 23 22 45 45 H 1.07994 * 119.93031 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.07045 * 179.97438 * 26 25 24 47 47 H 1.08999 * 109.68410 * 69.18317 * 27 14 13 48 48 H 1.09001 * 109.68102 * 189.74281 * 27 14 13 49 49 H 1.09001 * 109.51264 * 172.22687 * 28 27 14 50 50 H 1.08992 * 109.51421 * 292.33104 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0641 -4.8197 0.0001 12 1 0.3798 -4.7134 0.8419 13 6 1.8257 -6.1443 0.1234 14 7 0.8708 -7.2480 -0.0651 15 6 0.8030 -8.2650 0.8168 16 8 1.5354 -8.2794 1.7833 17 6 -0.1830 -9.3843 0.6017 18 6 -0.0560 -10.4010 1.7379 19 6 -1.0423 -11.5200 1.5232 20 6 -0.6288 -12.7795 1.5343 21 6 0.7617 -13.0972 1.9220 22 6 1.4634 -14.1011 1.2534 23 6 2.7628 -14.3896 1.6169 24 6 3.3666 -13.6931 2.6485 25 6 2.6745 -12.7003 3.3189 26 6 1.3764 -12.3984 2.9615 27 6 -0.0075 -7.2087 -1.2451 28 6 -0.6798 -5.8322 -1.3018 29 8 0.3220 -4.8154 -1.2219 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6849 -3.7145 0.8895 33 1 2.6850 -3.7145 -0.8904 34 1 2.6007 -6.1948 -0.6413 35 1 2.2799 -6.2160 1.1118 36 1 -1.1950 -8.9794 0.5883 37 1 0.0251 -9.8740 -0.3495 38 1 0.9559 -10.8059 1.7517 39 1 -0.2643 -9.9111 2.6890 40 1 -2.0863 -11.2958 1.3603 41 1 -1.3078 -13.5732 1.2601 42 1 0.9917 -14.6488 0.4509 43 1 3.3083 -15.1638 1.0977 44 1 4.3824 -13.9255 2.9319 45 1 3.1512 -12.1604 4.1235 46 1 0.8371 -11.6234 3.4859 47 1 0.5830 -7.3663 -2.1477 48 1 -0.7678 -7.9855 -1.1629 49 1 -1.2261 -5.7322 -2.2398 50 1 -1.3710 -5.7299 -0.4653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733744241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:36 Heat of formation + Delta-G solvation = -20.833951 kcal Electronic energy + Delta-G solvation = -29112.485916 eV Core-core repulsion = 25105.473098 eV Total energy + Delta-G solvation = -4007.012818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.45083 -39.64715 -38.39421 -35.96349 -35.04983 -34.38099 -32.57454 -31.97688 -31.19239 -30.20131 -29.42350 -28.06658 -26.13484 -24.52601 -23.49863 -22.80150 -22.65658 -21.98241 -20.83318 -19.57767 -19.09571 -17.46564 -17.07087 -16.65777 -16.47523 -16.28111 -15.91586 -15.75479 -15.32142 -15.05547 -14.82741 -14.45875 -14.37024 -14.03994 -13.89209 -13.67014 -13.40827 -13.14802 -12.92346 -12.85765 -12.67646 -12.60169 -12.28551 -12.02291 -11.97216 -11.63406 -11.50069 -11.28610 -11.00340 -10.97721 -10.88163 -10.76861 -10.46776 -10.12497 -10.04845 -9.90337 -9.81311 -9.64721 -9.15796 -8.84920 -8.54325 -8.52986 -6.87990 -5.71429 -3.00168 0.72844 1.13264 2.01798 2.51479 2.80258 3.47698 3.51422 3.52822 3.55972 3.93970 4.22963 4.42490 4.59142 4.61779 4.62203 4.71007 4.73397 4.79291 4.82673 4.88194 4.93669 5.07571 5.13981 5.15674 5.17339 5.26056 5.30471 5.32188 5.50369 5.60992 5.61243 5.65884 5.67706 5.70387 5.77029 5.85454 5.89278 5.96563 6.07162 6.11870 6.25084 6.27720 6.29584 6.33154 6.47379 6.57315 6.70761 6.71469 7.25027 7.46149 7.72809 8.04468 8.46649 9.58186 10.15205 10.51142 11.51327 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021668 B = 0.001795 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.906411 B =15593.608456 C =16278.289843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.085 3.915 14 N -0.615 5.615 15 C 0.515 3.485 16 O -0.539 6.539 17 C -0.134 4.134 18 C -0.094 4.094 19 C -0.137 4.137 20 C -0.127 4.127 21 C -0.059 4.059 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.104 4.104 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.358 6.358 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.036 0.964 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.128 0.872 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.104 0.896 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -31.613 0.725 31.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.081 0.919 13 C -0.038 4.038 14 N -0.350 5.350 15 C 0.303 3.697 16 O -0.416 6.416 17 C -0.174 4.174 18 C -0.131 4.131 19 C -0.155 4.155 20 C -0.145 4.145 21 C -0.060 4.060 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.122 4.122 27 C -0.052 4.052 28 C -0.033 4.033 29 O -0.276 6.276 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.142 0.858 46 H 0.146 0.854 47 H 0.096 0.904 48 H 0.109 0.891 49 H 0.122 0.878 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.538 -31.359 1.098 31.416 hybrid contribution -0.044 0.733 -0.028 0.734 sum -1.582 -30.627 1.070 30.686 Atomic orbital electron populations 1.69667 1.05107 1.25674 1.57664 1.24747 0.95541 0.97681 1.03046 0.86242 0.78477 0.83475 0.77828 1.21275 1.21714 1.21282 1.19183 0.91005 0.84098 1.42784 0.91180 1.42220 1.05990 0.99494 1.89369 1.20620 0.92422 0.84649 0.98814 1.22796 0.94164 0.94274 0.87234 0.91888 1.22331 0.91791 0.85477 1.04195 1.48203 1.38701 1.23098 1.24957 1.20686 0.84259 0.82739 0.81999 1.90697 1.43797 1.77691 1.29429 1.21641 0.99426 0.95033 1.01300 1.20909 1.00078 0.93983 0.98111 1.23315 0.99309 0.93908 0.98999 1.21665 0.93911 0.96910 1.01999 1.19076 0.94086 0.96423 0.96365 1.21247 0.94722 0.97439 0.99594 1.21083 0.95249 1.00101 0.97743 1.21230 0.99918 0.96382 0.96319 1.21153 0.94813 0.97681 1.00098 1.21484 0.95315 0.98688 0.96728 1.22524 0.94394 0.99697 0.88559 1.22914 0.90919 0.86533 1.02921 1.88163 1.49517 1.52021 1.37881 0.93525 0.77929 0.94655 0.95274 0.90540 0.88057 0.88812 0.88877 0.89055 0.90076 0.86328 0.86113 0.86058 0.86121 0.86167 0.85846 0.85378 0.90369 0.89063 0.87793 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.15 5.55 -59.91 -0.33 -19.48 16 10 C 0.16 3.40 5.93 -4.04 -0.02 3.38 16 11 C 0.07 1.28 2.81 -26.58 -0.07 1.21 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.08 1.24 5.93 -3.53 -0.02 1.22 16 14 N -0.62 -7.73 3.02 -172.27 -0.52 -8.25 16 15 C 0.51 6.54 7.71 -10.98 -0.08 6.45 16 16 O -0.54 -8.78 15.45 5.56 0.09 -8.69 16 17 C -0.13 -1.14 4.06 -27.89 -0.11 -1.25 16 18 C -0.09 -0.83 3.27 -27.89 -0.09 -0.92 16 19 C -0.14 -0.95 9.46 -36.21 -0.34 -1.30 16 20 C -0.13 -0.92 9.79 -37.57 -0.37 -1.28 16 21 C -0.06 -0.52 5.13 -105.01 -0.54 -1.06 16 22 C -0.11 -0.90 9.79 -39.19 -0.38 -1.28 16 23 C -0.12 -0.96 10.03 -39.64 -0.40 -1.36 16 24 C -0.12 -0.98 10.04 -39.50 -0.40 -1.38 16 25 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 26 C -0.10 -0.97 7.32 -39.20 -0.29 -1.26 16 27 C 0.07 0.69 6.54 -3.53 -0.02 0.67 16 28 C 0.05 0.55 6.99 37.31 0.26 0.81 16 29 O -0.36 -6.22 10.34 -35.23 -0.36 -6.58 16 30 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.39 10.81 7.67 -40.82 -0.31 10.50 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.56 7.08 -51.93 -0.37 1.20 16 36 H 0.09 0.62 7.66 -51.93 -0.40 0.23 16 37 H 0.09 0.66 8.01 -51.93 -0.42 0.24 16 38 H 0.09 0.96 4.79 -51.93 -0.25 0.72 16 39 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 40 H 0.12 0.62 8.06 -52.48 -0.42 0.19 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.13 1.15 6.40 -52.49 -0.34 0.82 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 0.59 6.05 -51.93 -0.31 0.28 16 49 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 405.71 15.07 6.11 6.11 Total: -1.00 -35.09 405.71 -10.69 -45.79 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.85 Total: 7.78 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.53 Total: -6.37 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.13 Total: -55.82 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.28 Total: -15.27 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.09 -10.69 -45.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733744241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.954 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds