Wall clock time and date at job start Wed Apr 1 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00370 * 2 1 4 4 H 1.48498 * 109.47795 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47052 * 299.99754 * 3 2 1 6 6 H 1.48494 * 109.47132 * 59.99170 * 3 2 1 7 7 C 1.38813 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00717 * 161.51289 * 7 2 1 9 9 N 1.36944 * 119.99664 * 341.51997 * 7 2 1 10 10 C 1.47234 * 121.34868 * 333.20095 * 9 7 2 11 11 C 1.52795 * 107.88624 * 115.67524 * 10 9 7 12 12 C 1.50600 * 110.85108 * 47.44123 * 11 10 9 13 13 C 1.38987 * 117.61429 * 160.39534 * 12 11 10 14 14 C 1.37896 * 120.58550 * 179.56902 * 13 12 11 15 15 C 1.38263 * 119.82988 * 359.96274 * 14 13 12 16 16 C 1.37953 * 119.71459 * 0.21289 * 15 14 13 17 17 C 1.37669 * 122.87271 * 340.28206 * 12 11 10 18 18 C 1.46687 * 121.34924 * 153.22434 * 9 7 2 19 19 H 1.09002 * 109.43866 * 344.30302 * 18 9 7 20 20 C 1.52998 * 109.43718 * 104.21419 * 18 9 7 21 21 N 1.46501 * 109.47415 * 305.00310 * 20 18 9 22 22 C 1.34776 * 120.00625 * 179.97438 * 21 20 18 23 23 O 1.21289 * 119.99486 * 359.97438 * 22 21 20 24 24 C 1.50701 * 120.00401 * 179.97438 * 22 21 20 25 25 C 1.53001 * 109.46861 * 180.02562 * 24 22 21 26 26 H 1.08996 * 110.80347 * 305.69731 * 25 24 22 27 27 C 1.54811 * 110.90200 * 182.07266 * 25 24 22 28 28 C 1.54103 * 104.18438 * 220.92006 * 27 25 24 29 29 O 1.43743 * 107.29750 * 357.97098 * 28 27 25 30 30 C 1.44426 * 106.99650 * 26.48689 * 29 28 27 31 31 H 0.96996 * 119.99949 * 0.02562 * 1 2 3 32 32 H 1.08991 * 109.78254 * 235.27444 * 10 9 7 33 33 H 1.09005 * 109.77686 * 356.08074 * 10 9 7 34 34 H 1.08990 * 109.20318 * 167.79655 * 11 10 9 35 35 H 1.09007 * 109.20003 * 287.09370 * 11 10 9 36 36 H 1.08004 * 119.70235 * 359.59342 * 13 12 11 37 37 H 1.08006 * 120.08753 * 179.97438 * 14 13 12 38 38 H 1.08007 * 120.14546 * 180.23690 * 15 14 13 39 39 H 1.08002 * 119.74427 * 179.97438 * 16 15 14 40 40 H 1.08995 * 109.47740 * 185.00001 * 20 18 9 41 41 H 1.08997 * 109.46985 * 64.99934 * 20 18 9 42 42 H 0.97005 * 119.99527 * 359.97438 * 21 20 18 43 43 H 1.08995 * 109.46931 * 59.99616 * 24 22 21 44 44 H 1.08997 * 109.46949 * 300.00066 * 24 22 21 45 45 H 1.08996 * 110.49094 * 339.59691 * 27 25 24 46 46 H 1.08999 * 110.48943 * 102.11123 * 27 25 24 47 47 H 1.09003 * 109.87651 * 117.40062 * 28 27 25 48 48 H 1.08997 * 109.87756 * 238.39497 * 28 27 25 49 49 H 1.08996 * 110.65279 * 201.48110 * 30 29 28 50 50 H 1.09006 * 110.59722 * 78.47428 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0103 -1.2021 0.0005 8 1 3.0485 -1.2264 -0.2960 9 7 1.3785 -2.3573 0.3770 10 6 0.2339 -2.3377 1.3028 11 6 -0.9925 -2.8417 0.5435 12 6 -0.6730 -4.1038 -0.2135 13 6 -1.7374 -4.9079 -0.6038 14 6 -1.5155 -6.0728 -1.3075 15 6 -0.2239 -6.4463 -1.6297 16 6 0.8348 -5.6520 -1.2405 17 6 0.6130 -4.4808 -0.5287 18 6 1.8152 -3.6645 -0.1254 19 1 2.4633 -3.5227 -0.9903 20 6 2.5855 -4.4006 0.9726 21 7 3.6870 -3.5582 1.4451 22 6 4.5064 -4.0033 2.4182 23 8 4.3315 -5.1012 2.9031 24 6 5.6399 -3.1369 2.9038 25 6 6.4100 -3.8730 4.0019 26 1 5.7382 -4.1915 4.7990 27 6 7.5523 -2.9908 4.5617 28 6 8.7319 -3.9668 4.7373 29 8 8.2658 -5.2729 4.3593 30 6 7.1873 -5.0803 3.4182 31 1 -0.4850 0.8400 -0.0004 32 1 0.4353 -2.9900 2.1524 33 1 0.0591 -1.3199 1.6517 34 1 -1.7956 -3.0424 1.2524 35 1 -1.3191 -2.0751 -0.1594 36 1 -2.7472 -4.6175 -0.3539 37 1 -2.3486 -6.6918 -1.6064 38 1 -0.0445 -7.3557 -2.1841 39 1 1.8440 -5.9435 -1.4916 40 1 2.9861 -5.3323 0.5734 41 1 1.9141 -4.6200 1.8028 42 1 3.8266 -2.6799 1.0575 43 1 5.2396 -2.2048 3.3025 44 1 6.3114 -2.9183 2.0736 45 1 7.8100 -2.2046 3.8521 46 1 7.2659 -2.5588 5.5206 47 1 9.5593 -3.6678 4.0938 48 1 9.0558 -3.9733 5.7781 49 1 6.5501 -5.9637 3.3776 50 1 7.5792 -4.8427 2.4292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733908474.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:10 Heat of formation + Delta-G solvation = -44.168865 kcal Electronic energy + Delta-G solvation = -30786.324059 eV Core-core repulsion = 26778.299363 eV Total energy + Delta-G solvation = -4008.024696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.00145 -39.45294 -38.59838 -36.32990 -34.18615 -33.49888 -32.37108 -32.00523 -30.01245 -29.92347 -28.73754 -27.58306 -26.25507 -24.11156 -22.81525 -22.59640 -22.06729 -21.31080 -20.71890 -19.83294 -18.67982 -17.29455 -16.76875 -16.14642 -16.00653 -15.78004 -15.60258 -15.32953 -15.09691 -14.65771 -14.53009 -14.25986 -14.05221 -13.60101 -13.54774 -13.29944 -12.94495 -12.65593 -12.58889 -12.42331 -12.27854 -11.92524 -11.74182 -11.71284 -11.42799 -11.28686 -11.15280 -11.12361 -10.90277 -10.87710 -10.74364 -10.70559 -10.46609 -10.15186 -9.91775 -9.74390 -9.61823 -9.44830 -8.66693 -8.52926 -8.27249 -7.93844 -6.89211 -5.98684 -3.42729 1.85270 1.92577 2.99211 3.24262 3.31559 3.34371 3.57110 3.93996 4.27323 4.30148 4.44941 4.68108 4.80290 4.97735 5.06027 5.17729 5.20469 5.23402 5.33846 5.39139 5.42327 5.43673 5.50139 5.55681 5.59112 5.61754 5.72348 5.80376 5.82206 5.87794 5.95598 5.99728 6.07959 6.17994 6.21795 6.34878 6.42123 6.52121 6.56816 6.68872 6.73667 6.79557 6.92092 6.95216 7.00846 7.30813 7.33107 7.49226 7.57914 7.63594 8.02495 8.21798 8.64005 8.98488 9.60712 10.20154 11.08571 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009069 B = 0.003603 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.575675 B = 7770.212235 C =10293.615531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.012 3.988 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.579 5.579 10 C 0.165 3.835 11 C -0.096 4.096 12 C -0.040 4.040 13 C -0.134 4.134 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.119 4.119 17 C -0.080 4.080 18 C 0.193 3.807 19 H 0.076 0.924 20 C 0.115 3.885 21 N -0.706 5.706 22 C 0.506 3.494 23 O -0.557 6.557 24 C -0.133 4.133 25 C -0.102 4.102 26 H 0.093 0.907 27 C -0.155 4.155 28 C 0.047 3.953 29 O -0.382 6.382 30 C 0.054 3.946 31 H 0.255 0.745 32 H 0.007 0.993 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.410 0.590 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.312 -5.980 3.137 9.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.189 4.189 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.300 5.300 10 C 0.040 3.960 11 C -0.135 4.135 12 C -0.040 4.040 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.157 4.157 16 C -0.137 4.137 17 C -0.082 4.082 18 C 0.084 3.916 19 H 0.094 0.906 20 C -0.012 4.012 21 N -0.357 5.357 22 C 0.292 3.708 23 O -0.436 6.436 24 C -0.173 4.173 25 C -0.121 4.121 26 H 0.112 0.888 27 C -0.193 4.193 28 C -0.030 4.030 29 O -0.301 6.301 30 C -0.022 4.022 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.248 0.752 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.122 0.878 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.160 -6.751 3.534 10.456 hybrid contribution 0.080 1.558 -0.534 1.648 sum 7.240 -5.193 3.000 9.401 Atomic orbital electron populations 1.69972 1.05294 1.25598 1.52379 1.25003 0.95233 0.98397 1.00221 0.86256 0.79326 0.83924 0.77358 1.20216 1.21722 1.21514 1.19054 0.92903 0.84513 1.42447 0.91405 1.44137 1.36094 1.00049 1.49749 1.20787 0.85173 1.00697 0.89340 1.20995 0.99448 0.93801 0.99241 1.19869 0.91917 0.95895 0.96316 1.21198 0.98569 0.95362 1.00106 1.20914 0.96606 0.97221 0.99867 1.20882 0.93009 0.99890 1.01951 1.21093 0.98631 0.94818 0.99183 1.20086 0.95298 0.94897 0.97924 1.19614 0.91513 0.86454 0.93976 0.90594 1.21868 0.88111 0.92841 0.98366 1.45963 1.29930 1.21442 1.38349 1.20534 0.83368 0.87264 0.79615 1.90654 1.73465 1.21843 1.57653 1.21653 0.96560 0.99722 0.99374 1.22443 0.96547 0.95090 0.98041 0.88820 1.23032 0.95152 0.98712 1.02365 1.23111 0.96164 0.83251 1.00509 1.88872 1.52168 1.26499 1.62584 1.23695 0.87258 0.99501 0.91743 0.93471 0.97547 0.88760 0.93362 0.88083 0.86899 0.87049 0.86949 0.86790 0.92523 0.92224 0.75241 0.88298 0.88914 0.90387 0.90333 0.92639 0.90147 0.87753 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.82 10.13 55.49 0.56 -22.26 16 2 C 0.01 0.28 4.93 -17.43 -0.09 0.20 16 3 Si 0.90 19.46 29.59 -169.99 -5.03 14.43 16 4 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.08 8.73 -15.06 -0.13 -6.21 16 8 H 0.07 1.51 7.29 -52.49 -0.38 1.13 16 9 N -0.58 -12.56 2.30 -166.31 -0.38 -12.94 16 10 C 0.17 3.60 5.46 -3.75 -0.02 3.58 16 11 C -0.10 -1.97 5.77 -28.04 -0.16 -2.13 16 12 C -0.04 -0.76 5.76 -104.60 -0.60 -1.37 16 13 C -0.13 -2.26 9.59 -39.43 -0.38 -2.64 16 14 C -0.13 -1.93 10.04 -39.70 -0.40 -2.33 16 15 C -0.14 -2.08 10.05 -39.68 -0.40 -2.48 16 16 C -0.12 -1.93 9.33 -39.46 -0.37 -2.30 16 17 C -0.08 -1.50 5.17 -104.55 -0.54 -2.04 16 18 C 0.19 3.66 2.50 -68.93 -0.17 3.49 16 19 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16 20 C 0.11 2.01 5.01 -4.04 -0.02 1.99 16 21 N -0.71 -11.53 5.39 -60.30 -0.32 -11.85 16 22 C 0.51 7.93 7.65 -10.99 -0.08 7.85 16 23 O -0.56 -10.33 14.75 5.55 0.08 -10.25 16 24 C -0.13 -1.57 5.10 -27.88 -0.14 -1.71 16 25 C -0.10 -1.20 2.68 -88.61 -0.24 -1.43 16 26 H 0.09 1.24 7.97 -51.93 -0.41 0.83 16 27 C -0.15 -1.43 6.60 -25.20 -0.17 -1.60 16 28 C 0.05 0.46 7.70 37.73 0.29 0.75 16 29 O -0.38 -5.07 11.52 -35.23 -0.41 -5.48 16 30 C 0.05 0.69 6.56 38.21 0.25 0.94 16 31 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 32 H 0.01 0.14 7.47 -51.93 -0.39 -0.25 16 33 H 0.09 2.28 5.95 -51.93 -0.31 1.97 16 34 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 35 H 0.10 2.35 7.12 -51.93 -0.37 1.98 16 36 H 0.11 1.70 8.05 -52.48 -0.42 1.28 16 37 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.11 1.63 8.05 -52.49 -0.42 1.20 16 40 H 0.06 0.95 8.03 -51.93 -0.42 0.54 16 41 H 0.06 1.17 7.54 -51.93 -0.39 0.77 16 42 H 0.41 6.69 6.68 -40.82 -0.27 6.42 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 0.93 8.05 -51.93 -0.42 0.51 16 45 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 1.49 7.30 -51.93 -0.38 1.11 16 50 H 0.06 0.65 7.98 -51.93 -0.41 0.23 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -27.78 392.06 -10.88 -38.66 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.92 Total: 11.23 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -3.37 Total: -7.44 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.15 Total: -47.06 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.32 Total: -15.73 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -27.78 -10.88 -38.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733908474.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.511 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds