Wall clock time and date at job start Wed Apr 1 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99731 * 2 1 4 4 H 1.48497 * 109.47266 * 270.00255 * 3 2 1 5 5 H 1.48503 * 109.46856 * 30.00683 * 3 2 1 6 6 H 1.48494 * 109.46904 * 150.00251 * 3 2 1 7 7 C 1.38816 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.07989 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99555 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.48842 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11839 * 155.35734 * 10 9 7 12 12 C 1.53007 * 113.73752 * 269.15459 * 11 10 9 13 13 C 1.53002 * 109.46789 * 172.70944 * 12 11 10 14 14 O 1.42898 * 109.47046 * 184.99820 * 13 12 11 15 15 N 1.46488 * 113.74326 * 137.94996 * 11 10 9 16 16 C 1.34779 * 119.99970 * 65.51083 * 15 11 10 17 17 O 1.21546 * 120.00048 * 4.90958 * 16 15 11 18 18 C 1.47852 * 120.00174 * 184.91523 * 16 15 11 19 19 C 1.39596 * 120.14330 * 36.20805 * 18 16 15 20 20 C 1.37941 * 119.85074 * 180.27820 * 19 18 16 21 21 C 1.38374 * 120.14484 * 359.74800 * 20 19 18 22 22 C 1.38339 * 120.29464 * 359.97287 * 21 20 19 23 23 C 1.37986 * 120.14080 * 0.03041 * 22 21 20 24 24 C 1.50704 * 120.06922 * 179.97438 * 23 22 21 25 25 C 1.53783 * 113.61438 * 57.19358 * 24 23 22 26 26 C 1.53783 * 87.07883 * 220.01727 * 25 24 23 27 27 C 1.53788 * 87.17554 * 25.39198 * 26 25 24 28 28 C 1.47810 * 134.45965 * 359.86631 * 9 7 2 29 29 H 0.96995 * 120.00279 * 359.97438 * 1 2 3 30 30 H 1.08995 * 113.77108 * 41.05200 * 10 9 7 31 31 H 1.09000 * 113.86387 * 269.67070 * 10 9 7 32 32 H 1.09002 * 109.46724 * 292.71019 * 12 11 10 33 33 H 1.08996 * 109.46964 * 52.71173 * 12 11 10 34 34 H 1.08998 * 109.47437 * 305.00150 * 13 12 11 35 35 H 1.09000 * 109.46761 * 65.00114 * 13 12 11 36 36 H 0.96702 * 114.00336 * 180.02562 * 14 13 12 37 37 H 0.97001 * 120.00338 * 245.50253 * 15 11 10 38 38 H 1.08006 * 120.07463 * 0.02562 * 19 18 16 39 39 H 1.08007 * 119.92677 * 179.76933 * 20 19 18 40 40 H 1.07998 * 119.85456 * 180.02562 * 21 20 19 41 41 H 1.08002 * 119.93030 * 180.02562 * 22 21 20 42 42 H 1.08992 * 112.84747 * 188.39195 * 24 23 22 43 43 H 1.09000 * 113.61396 * 105.47015 * 25 24 23 44 44 H 1.08996 * 113.61382 * 334.56487 * 25 24 23 45 45 H 1.09004 * 113.61480 * 139.97924 * 26 25 24 46 46 H 1.08999 * 113.61526 * 270.80110 * 26 25 24 47 47 H 1.08998 * 113.61249 * 89.15171 * 27 26 25 48 48 H 1.08995 * 113.61632 * 220.06012 * 27 26 25 49 49 H 1.09003 * 113.76770 * 90.38411 * 28 9 7 50 50 H 1.09000 * 113.83647 * 318.91771 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.7202 -3.8101 -0.0005 11 6 0.3472 -4.0830 0.6399 12 6 0.3648 -4.0563 2.1696 13 6 -1.0677 -4.1561 2.6979 14 8 -1.0619 -4.0143 4.1198 15 7 -0.3331 -5.2613 0.0970 16 6 0.1911 -6.4886 0.2856 17 8 1.1785 -6.6275 0.9806 18 6 -0.4350 -7.6660 -0.3531 19 6 -0.9917 -7.5583 -1.6287 20 6 -1.5794 -8.6592 -2.2165 21 6 -1.6131 -9.8695 -1.5467 22 6 -1.0580 -9.9845 -0.2848 23 6 -0.4672 -8.8909 0.3145 24 6 0.1364 -9.0178 1.6895 25 6 1.2221 -10.1026 1.7880 26 6 0.6301 -10.4592 3.1617 27 6 -0.7001 -9.8774 2.6548 28 6 -0.1057 -2.7571 0.0024 29 1 -0.4850 0.8400 0.0004 30 1 2.5625 -4.0323 0.6546 31 1 1.8326 -4.2366 -0.9973 32 1 0.9486 -4.8985 2.5410 33 1 0.8139 -3.1238 2.5115 34 1 -1.6738 -3.3652 2.2563 35 1 -1.4864 -5.1265 2.4312 36 1 -1.9388 -4.0678 4.5240 37 1 -1.1609 -5.1583 -0.3980 38 1 -0.9661 -6.6141 -2.1525 39 1 -2.0138 -8.5763 -3.2019 40 1 -2.0740 -10.7285 -2.0116 41 1 -1.0872 -10.9321 0.2325 42 1 0.4385 -8.0584 2.1093 43 1 2.2350 -9.7031 1.8394 44 1 1.1156 -10.8953 1.0475 45 1 0.5920 -11.5312 3.3558 46 1 1.0676 -9.8953 3.9855 47 1 -1.3329 -10.6085 2.1516 48 1 -1.2367 -9.2965 3.4048 49 1 -0.5318 -2.8719 -0.9943 50 1 -0.7183 -2.1403 0.6599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734076028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:22 Heat of formation + Delta-G solvation = 15.815356 kcal Electronic energy + Delta-G solvation = -31133.921574 eV Core-core repulsion = 27128.497989 eV Total energy + Delta-G solvation = -4005.423585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.71275 -39.46765 -37.92517 -37.41363 -36.35369 -33.69350 -32.15679 -31.34146 -31.03793 -30.10708 -27.10499 -25.69311 -25.66248 -25.07591 -24.09802 -23.14196 -22.10942 -21.48172 -20.28660 -19.23249 -18.60407 -17.78137 -17.04790 -16.79478 -16.43541 -15.79272 -15.43284 -15.15559 -14.92160 -14.75781 -14.50962 -14.35558 -14.17226 -13.75440 -13.63027 -13.47665 -13.13042 -12.63862 -12.55169 -12.51630 -12.03101 -11.96651 -11.83604 -11.72499 -11.64794 -11.45892 -11.03892 -10.94637 -10.76384 -10.72679 -10.67413 -10.50831 -10.29573 -10.16469 -9.87020 -9.68823 -9.54184 -9.16997 -9.07294 -8.90285 -8.79638 -8.56608 -6.93906 -5.81216 -3.13062 0.88448 1.20233 2.95610 3.36772 3.41129 3.45241 3.46819 3.68984 4.44513 4.49250 4.49686 4.53748 4.66735 4.75281 4.80055 4.87133 4.96138 5.02552 5.17796 5.19349 5.26844 5.34668 5.48163 5.54974 5.58330 5.60462 5.69667 5.73031 5.75553 5.79799 5.82665 5.91254 5.96146 5.98072 6.06055 6.18413 6.29049 6.32436 6.34402 6.47036 6.48714 6.63407 6.63880 6.75755 6.77080 6.84462 7.10423 7.30158 7.47269 7.82260 7.91545 7.93406 8.50778 9.00653 9.66767 10.52699 11.36367 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.003033 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.587464 B = 9229.255853 C =10037.549849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.220 4.220 8 H 0.082 0.918 9 N -0.604 5.604 10 C 0.127 3.873 11 C 0.124 3.876 12 C -0.095 4.095 13 C 0.084 3.916 14 O -0.574 6.574 15 N -0.709 5.709 16 C 0.556 3.444 17 O -0.524 6.524 18 C -0.125 4.125 19 C -0.086 4.086 20 C -0.132 4.132 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.017 4.017 24 C -0.086 4.086 25 C -0.125 4.125 26 C -0.141 4.141 27 C -0.137 4.137 28 C 0.166 3.834 29 H 0.254 0.746 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.034 0.966 36 H 0.371 0.629 37 H 0.397 0.603 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.030 0.970 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.605 -21.576 0.515 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.330 5.330 10 C 0.000 4.000 11 C 0.038 3.962 12 C -0.133 4.133 13 C 0.006 3.994 14 O -0.378 6.378 15 N -0.360 5.360 16 C 0.343 3.657 17 O -0.402 6.402 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.150 4.150 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.018 4.018 24 C -0.104 4.104 25 C -0.162 4.162 26 C -0.178 4.178 27 C -0.174 4.174 28 C 0.040 3.960 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.217 0.783 37 H 0.231 0.769 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.048 0.952 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.176 -21.211 0.910 22.110 hybrid contribution -0.685 0.889 -0.638 1.290 sum -6.861 -20.322 0.273 21.451 Atomic orbital electron populations 1.69782 1.05004 1.25449 1.56688 1.24768 0.95710 0.97533 1.02268 0.86094 0.78726 0.83277 0.77541 1.21637 1.21597 1.20521 1.19003 0.90318 0.81520 1.43867 0.89990 1.45687 1.01821 0.99467 1.86028 1.22799 0.94549 0.85746 0.96866 1.22987 0.95591 0.84336 0.93288 1.21344 0.95504 1.04316 0.92179 1.22109 0.98404 0.98627 0.80258 1.86500 1.33820 1.96493 1.21013 1.46182 1.27497 1.05975 1.56339 1.18272 0.84011 0.82802 0.80651 1.90715 1.25855 1.85364 1.38255 1.19994 1.02463 0.94376 0.96011 1.21366 0.95636 0.99328 0.94139 1.21073 1.00670 0.92942 1.00326 1.21268 0.98285 0.97636 0.94684 1.20944 0.99618 0.98390 0.95563 1.19806 0.94827 0.91472 0.95650 1.21978 0.96297 1.00928 0.91220 1.22878 0.98799 0.97585 0.96953 1.22804 0.96942 1.00612 0.97488 1.23093 0.96506 0.99054 0.98778 1.22583 0.89035 0.87431 0.96926 0.93599 0.92984 0.94724 0.90643 0.89154 0.93394 0.94735 0.78306 0.76896 0.85275 0.85646 0.85921 0.85688 0.85827 0.90988 0.90446 0.91652 0.90034 0.90191 0.91435 0.95187 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 11.39 55.49 0.63 -25.96 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.13 10.70 -15.06 -0.16 -6.29 16 8 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 9 N -0.60 -15.31 3.55 -177.50 -0.63 -15.94 16 10 C 0.13 2.76 7.70 -2.97 -0.02 2.74 16 11 C 0.12 2.34 0.67 -134.04 -0.09 2.25 16 12 C -0.09 -1.83 4.82 -26.73 -0.13 -1.96 16 13 C 0.08 1.37 6.77 37.16 0.25 1.62 16 14 O -0.57 -9.26 13.66 -35.23 -0.48 -9.74 16 15 N -0.71 -10.77 4.53 -50.01 -0.23 -11.00 16 16 C 0.56 8.66 6.72 -12.33 -0.08 8.58 16 17 O -0.52 -9.66 12.59 5.33 0.07 -9.60 16 18 C -0.13 -1.63 5.78 -104.97 -0.61 -2.24 16 19 C -0.09 -0.94 9.34 -39.18 -0.37 -1.31 16 20 C -0.13 -1.21 10.03 -39.64 -0.40 -1.61 16 21 C -0.10 -0.87 10.04 -39.49 -0.40 -1.27 16 22 C -0.13 -1.24 8.49 -39.64 -0.34 -1.57 16 23 C -0.02 -0.20 5.32 -104.23 -0.55 -0.75 16 24 C -0.09 -1.04 3.40 -90.86 -0.31 -1.35 16 25 C -0.12 -1.34 7.54 -25.92 -0.20 -1.53 16 26 C -0.14 -1.31 8.08 -25.91 -0.21 -1.52 16 27 C -0.14 -1.33 7.48 -25.82 -0.19 -1.52 16 28 C 0.17 3.71 6.65 -2.85 -0.02 3.69 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.51 6.85 -51.93 -0.36 1.15 16 33 H 0.09 2.02 8.02 -51.93 -0.42 1.61 16 34 H 0.05 0.79 7.41 -51.93 -0.38 0.41 16 35 H 0.03 0.51 7.84 -51.93 -0.41 0.11 16 36 H 0.37 4.00 9.12 45.56 0.42 4.42 16 37 H 0.40 5.06 8.07 -40.82 -0.33 4.73 16 38 H 0.13 1.28 7.75 -52.48 -0.41 0.87 16 39 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.98 6.74 -52.49 -0.35 0.63 16 42 H 0.12 1.86 5.37 -51.93 -0.28 1.58 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.74 7.54 -51.93 -0.39 0.35 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.67 6.48 -51.93 -0.34 0.33 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.08 2.01 6.53 -51.93 -0.34 1.67 16 LS Contribution 398.53 15.07 6.01 6.01 Total: -1.00 -32.77 398.53 -10.50 -43.28 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.93 Total: 10.23 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.91 Total: -4.33 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.22 Total: -52.90 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.41 Total: -19.34 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.77 -10.50 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734076028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.091 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds