Wall clock time and date at job start Wed Apr 1 2020 02:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47311 * 270.00114 * 3 2 1 5 5 H 1.48497 * 109.47228 * 30.00088 * 3 2 1 6 6 H 1.48504 * 109.46776 * 150.00281 * 3 2 1 7 7 C 1.38810 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00377 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.64377 * 359.95464 * 9 7 2 11 11 C 1.54330 * 107.26636 * 181.09761 * 10 9 7 12 12 C 1.55151 * 102.94608 * 22.19126 * 11 10 9 13 13 H 1.09003 * 111.03715 * 82.58109 * 12 11 10 14 14 C 1.52992 * 111.00797 * 206.42521 * 12 11 10 15 15 N 1.46505 * 109.47152 * 178.65113 * 14 12 11 16 16 C 1.34779 * 119.99446 * 179.97438 * 15 14 12 17 17 O 1.21275 * 120.00484 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99453 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47292 * 180.02562 * 18 16 15 20 20 H 1.09005 * 109.33188 * 305.32386 * 19 18 16 21 21 O 1.42719 * 109.34005 * 64.99443 * 19 18 16 22 22 C 1.43206 * 113.14330 * 171.87321 * 21 19 18 23 23 C 1.52969 * 108.48891 * 289.35630 * 22 21 19 24 24 C 1.50748 * 109.76154 * 49.21945 * 23 22 21 25 25 C 1.38597 * 118.76486 * 163.01743 * 24 23 22 26 26 C 1.38067 * 120.27394 * 179.73017 * 25 24 23 27 27 C 1.38254 * 119.86401 * 359.93376 * 26 25 24 28 28 C 1.38056 * 119.89866 * 0.10702 * 27 26 25 29 29 C 1.37902 * 121.35083 * 343.14465 * 24 23 22 30 30 C 1.47420 * 125.65170 * 180.02562 * 9 7 2 31 31 H 0.97003 * 119.99512 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.88565 * 300.50951 * 10 9 7 33 33 H 1.09002 * 109.88706 * 61.53060 * 10 9 7 34 34 H 1.09003 * 110.71590 * 263.82928 * 11 10 9 35 35 H 1.09002 * 110.71700 * 140.55816 * 11 10 9 36 36 H 1.08995 * 109.47412 * 58.65012 * 14 12 11 37 37 H 1.08998 * 109.47155 * 298.65102 * 14 12 11 38 38 H 0.96990 * 119.99855 * 359.97438 * 15 14 12 39 39 H 1.09003 * 109.47349 * 59.99866 * 18 16 15 40 40 H 1.09002 * 109.47328 * 299.99845 * 18 16 15 41 41 H 1.09006 * 109.63763 * 169.65654 * 22 21 19 42 42 H 1.09000 * 109.80130 * 49.15137 * 22 21 19 43 43 H 1.09002 * 109.42190 * 289.13235 * 23 22 21 44 44 H 1.08994 * 109.37894 * 169.27972 * 23 22 21 45 45 H 1.08002 * 119.85848 * 359.75053 * 25 24 23 46 46 H 1.08010 * 120.06628 * 179.90674 * 26 25 24 47 47 H 1.08005 * 120.05428 * 180.08929 * 27 26 25 48 48 H 1.08002 * 119.84845 * 180.02562 * 28 27 26 49 49 H 1.09000 * 110.36621 * 36.98989 * 30 9 7 50 50 H 1.09005 * 110.36227 * 274.67097 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5326 -0.0013 11 6 -0.4485 -4.0441 0.0254 12 6 0.8519 -4.6562 0.6097 13 1 0.8576 -4.5969 1.6981 14 6 1.0368 -6.1008 0.1410 15 7 2.2881 -6.6343 0.6850 16 6 2.6605 -7.8986 0.4031 17 8 1.9601 -8.5944 -0.3011 18 6 3.9474 -8.4475 0.9632 19 6 4.1324 -9.8921 0.4944 20 1 3.2512 -10.4745 0.7635 21 8 4.2970 -9.9117 -0.9231 22 6 4.6604 -11.2009 -1.4298 23 6 6.0991 -11.5010 -1.0054 24 6 6.2604 -11.2389 0.4703 25 6 7.3577 -11.7737 1.1267 26 6 7.5390 -11.5486 2.4767 27 6 6.6230 -10.7853 3.1765 28 6 5.5292 -10.2529 2.5237 29 6 5.3413 -10.4855 1.1699 30 6 1.9333 -3.7312 -0.0017 31 1 -0.4849 0.8401 0.0004 32 1 -0.5575 -2.0522 0.8824 33 1 -0.5549 -2.0819 -0.9018 34 1 -0.6320 -4.4178 -0.9820 35 1 -1.2985 -4.2514 0.6756 36 1 1.0734 -6.1277 -0.9480 37 1 0.2009 -6.7063 0.4915 38 1 2.8485 -6.0777 1.2480 39 1 3.9105 -8.4204 2.0523 40 1 4.7836 -7.8424 0.6128 41 1 4.5923 -11.1994 -2.5177 42 1 3.9925 -11.9596 -1.0220 43 1 6.7827 -10.8615 -1.5640 44 1 6.3275 -12.5459 -1.2150 45 1 8.0740 -12.3687 0.5797 46 1 8.3946 -11.9682 2.9852 47 1 6.7626 -10.6061 4.2324 48 1 4.8143 -9.6565 3.0710 49 1 2.8328 -3.7405 0.6138 50 1 2.1663 -4.0420 -1.0202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753138164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:44 Heat of formation + Delta-G solvation = -38.079039 kcal Electronic energy + Delta-G solvation = -29495.324587 eV Core-core repulsion = 25487.563965 eV Total energy + Delta-G solvation = -4007.760622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.83817 -39.46189 -37.83708 -37.48330 -34.59073 -34.02486 -32.61112 -32.38807 -30.47298 -29.79240 -28.90690 -27.96534 -25.60864 -24.60357 -24.08984 -23.33582 -22.07995 -20.52968 -20.34265 -19.89959 -19.57426 -17.74696 -17.04461 -16.73603 -16.62662 -16.02370 -15.88670 -15.68270 -15.15235 -14.78176 -14.63694 -14.44424 -14.32675 -13.89389 -13.67022 -13.51026 -13.37386 -13.17079 -12.73845 -12.55151 -12.41851 -12.30514 -12.09576 -11.93175 -11.71721 -11.63317 -11.34383 -11.25186 -10.88792 -10.88374 -10.78761 -10.38301 -10.13556 -9.98660 -9.86813 -9.83186 -9.65438 -9.61746 -9.11884 -8.94478 -8.87286 -8.59039 -6.82007 -5.70372 -3.03815 0.95102 1.00456 2.75508 3.22423 3.38094 3.40437 3.45187 3.47176 3.56007 4.27725 4.28694 4.44377 4.50136 4.54957 4.74568 4.76203 4.86164 4.92184 5.02143 5.05689 5.14260 5.18452 5.23441 5.28793 5.31666 5.45190 5.47758 5.55465 5.56746 5.62860 5.65403 5.71609 5.73535 5.93106 6.07507 6.09541 6.09979 6.15055 6.22136 6.37203 6.50529 6.53813 6.55689 6.61775 6.72030 6.94042 6.95784 7.57107 7.62932 7.64747 7.83981 8.27296 8.34847 9.23152 9.83634 10.49880 11.41378 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.001956 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.613563 B =14310.021622 C =15008.208209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.079 0.921 14 C 0.134 3.866 15 N -0.727 5.727 16 C 0.513 3.487 17 O -0.533 6.533 18 C -0.135 4.135 19 C 0.149 3.851 20 H 0.079 0.921 21 O -0.355 6.355 22 C 0.060 3.940 23 C -0.118 4.118 24 C -0.070 4.070 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.122 4.122 28 C -0.111 4.111 29 C -0.114 4.114 30 C 0.142 3.858 31 H 0.252 0.748 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.401 0.599 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.035 0.965 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.125 -26.219 4.754 29.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.097 0.903 14 C 0.010 3.990 15 N -0.379 5.379 16 C 0.299 3.701 17 O -0.410 6.410 18 C -0.175 4.175 19 C 0.091 3.909 20 H 0.097 0.903 21 O -0.273 6.273 22 C -0.017 4.017 23 C -0.155 4.155 24 C -0.070 4.070 25 C -0.137 4.137 26 C -0.136 4.136 27 C -0.140 4.140 28 C -0.129 4.129 29 C -0.114 4.114 30 C 0.016 3.984 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.235 0.765 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.053 0.947 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.520 -26.303 4.116 29.009 hybrid contribution 0.912 0.996 0.510 1.444 sum 12.433 -25.307 4.626 28.573 Atomic orbital electron populations 1.69970 1.04875 1.24993 1.57126 1.24812 0.95739 0.97691 1.02333 0.86116 0.78540 0.83506 0.77575 1.21614 1.21694 1.20723 1.19055 0.90408 0.82459 1.43719 0.90498 1.44487 1.01754 0.99882 1.87181 1.21150 0.84315 0.88205 1.01106 1.22857 0.95466 0.99374 0.99692 1.22604 0.98554 0.92138 1.00425 0.90299 1.21362 0.85180 0.93621 0.98817 1.46071 1.24984 1.13781 1.53060 1.20360 0.87056 0.81825 0.80881 1.90708 1.54600 1.58399 1.37275 1.21814 0.97593 0.95869 1.02220 1.20491 0.93862 0.94934 0.81628 0.90317 1.88183 1.89640 1.30053 1.19414 1.22574 0.93335 0.85869 0.99899 1.21187 0.99338 1.02576 0.92372 1.19527 0.94592 0.97319 0.95568 1.21080 0.97408 1.00454 0.94791 1.21133 0.99281 0.98754 0.94401 1.21118 0.94808 0.98032 1.00024 1.21103 0.98222 0.99886 0.93642 1.20254 0.97303 0.99223 0.94638 1.21561 0.93952 0.86116 0.96778 0.93773 0.93602 0.93895 0.92203 0.92005 0.91450 0.91831 0.76488 0.87384 0.87730 0.88231 0.92675 0.89551 0.89784 0.86002 0.85984 0.85811 0.85580 0.94681 0.96288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 10.31 55.49 0.57 -26.65 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.61 -15.48 3.39 -170.08 -0.58 -16.06 16 10 C 0.18 4.30 5.38 -3.06 -0.02 4.28 16 11 C -0.13 -2.48 6.42 -24.90 -0.16 -2.64 16 12 C -0.12 -1.95 3.10 -88.49 -0.27 -2.22 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 14 C 0.13 1.96 5.12 -4.04 -0.02 1.94 16 15 N -0.73 -9.22 5.41 -60.30 -0.33 -9.55 16 16 C 0.51 6.84 7.71 -10.98 -0.08 6.76 16 17 O -0.53 -9.14 15.41 -8.98 -0.14 -9.28 16 18 C -0.14 -1.33 5.11 -27.88 -0.14 -1.47 16 19 C 0.15 1.61 2.28 -27.91 -0.06 1.54 16 20 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 21 O -0.35 -4.45 9.66 -49.77 -0.48 -4.93 16 22 C 0.06 0.55 6.84 37.14 0.25 0.80 16 23 C -0.12 -0.90 6.01 -27.88 -0.17 -1.07 16 24 C -0.07 -0.63 5.78 -104.59 -0.60 -1.23 16 25 C -0.12 -0.92 9.67 -39.51 -0.38 -1.30 16 26 C -0.12 -0.85 10.05 -39.64 -0.40 -1.25 16 27 C -0.12 -0.90 10.05 -39.64 -0.40 -1.29 16 28 C -0.11 -0.90 9.07 -39.50 -0.36 -1.26 16 29 C -0.11 -1.08 5.47 -104.62 -0.57 -1.66 16 30 C 0.14 2.86 6.41 -2.54 -0.02 2.85 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 33 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 34 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.09 8.10 -51.93 -0.42 0.66 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.40 4.29 8.34 -40.82 -0.34 3.95 16 39 H 0.11 0.75 6.29 -51.93 -0.33 0.42 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.47 8.08 -51.93 -0.42 0.06 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 47 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 48 H 0.13 0.79 6.44 -52.49 -0.34 0.45 16 49 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -34.45 396.82 -11.71 -46.16 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.06 Total: 1.31 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -3.66 Total: -4.12 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.33 Total: -52.26 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.62 Total: -14.21 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.45 -11.71 -46.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753138164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.076 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds