Wall clock time and date at job start Wed Apr 1 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47311 * 270.00114 * 3 2 1 5 5 H 1.48497 * 109.47228 * 30.00088 * 3 2 1 6 6 H 1.48504 * 109.46776 * 150.00281 * 3 2 1 7 7 C 1.38810 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00377 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.64377 * 359.95464 * 9 7 2 11 11 C 1.54330 * 107.26636 * 181.09761 * 10 9 7 12 12 C 1.55151 * 102.94608 * 22.19126 * 11 10 9 13 13 H 1.09003 * 111.03715 * 82.58109 * 12 11 10 14 14 C 1.52992 * 111.00797 * 206.42521 * 12 11 10 15 15 N 1.46505 * 109.47152 * 178.65113 * 14 12 11 16 16 C 1.34779 * 119.99446 * 179.97438 * 15 14 12 17 17 O 1.21275 * 120.00484 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99453 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47292 * 180.02562 * 18 16 15 20 20 H 1.09005 * 109.33188 * 305.32386 * 19 18 16 21 21 O 1.42719 * 109.34005 * 64.99443 * 19 18 16 22 22 C 1.43206 * 113.14330 * 171.87321 * 21 19 18 23 23 C 1.52969 * 108.48891 * 289.35630 * 22 21 19 24 24 C 1.50748 * 109.76154 * 49.21945 * 23 22 21 25 25 C 1.38597 * 118.76486 * 163.01743 * 24 23 22 26 26 C 1.38067 * 120.27394 * 179.73017 * 25 24 23 27 27 C 1.38254 * 119.86401 * 359.93376 * 26 25 24 28 28 C 1.38056 * 119.89866 * 0.10702 * 27 26 25 29 29 C 1.37902 * 121.35083 * 343.14465 * 24 23 22 30 30 C 1.47420 * 125.65170 * 180.02562 * 9 7 2 31 31 H 0.97003 * 119.99512 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.88565 * 300.50951 * 10 9 7 33 33 H 1.09002 * 109.88706 * 61.53060 * 10 9 7 34 34 H 1.09003 * 110.71590 * 263.82928 * 11 10 9 35 35 H 1.09002 * 110.71700 * 140.55816 * 11 10 9 36 36 H 1.08995 * 109.47412 * 58.65012 * 14 12 11 37 37 H 1.08998 * 109.47155 * 298.65102 * 14 12 11 38 38 H 0.96990 * 119.99855 * 359.97438 * 15 14 12 39 39 H 1.09003 * 109.47349 * 59.99866 * 18 16 15 40 40 H 1.09002 * 109.47328 * 299.99845 * 18 16 15 41 41 H 1.09006 * 109.63763 * 169.65654 * 22 21 19 42 42 H 1.09000 * 109.80130 * 49.15137 * 22 21 19 43 43 H 1.09002 * 109.42190 * 289.13235 * 23 22 21 44 44 H 1.08994 * 109.37894 * 169.27972 * 23 22 21 45 45 H 1.08002 * 119.85848 * 359.75053 * 25 24 23 46 46 H 1.08010 * 120.06628 * 179.90674 * 26 25 24 47 47 H 1.08005 * 120.05428 * 180.08929 * 27 26 25 48 48 H 1.08002 * 119.84845 * 180.02562 * 28 27 26 49 49 H 1.09000 * 110.36621 * 36.98989 * 30 9 7 50 50 H 1.09005 * 110.36227 * 274.67097 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5326 -0.0013 11 6 -0.4485 -4.0441 0.0254 12 6 0.8519 -4.6562 0.6097 13 1 0.8576 -4.5969 1.6981 14 6 1.0368 -6.1008 0.1410 15 7 2.2881 -6.6343 0.6850 16 6 2.6605 -7.8986 0.4031 17 8 1.9601 -8.5944 -0.3011 18 6 3.9474 -8.4475 0.9632 19 6 4.1324 -9.8921 0.4944 20 1 3.2512 -10.4745 0.7635 21 8 4.2970 -9.9117 -0.9231 22 6 4.6604 -11.2009 -1.4298 23 6 6.0991 -11.5010 -1.0054 24 6 6.2604 -11.2389 0.4703 25 6 7.3577 -11.7737 1.1267 26 6 7.5390 -11.5486 2.4767 27 6 6.6230 -10.7853 3.1765 28 6 5.5292 -10.2529 2.5237 29 6 5.3413 -10.4855 1.1699 30 6 1.9333 -3.7312 -0.0017 31 1 -0.4849 0.8401 0.0004 32 1 -0.5575 -2.0522 0.8824 33 1 -0.5549 -2.0819 -0.9018 34 1 -0.6320 -4.4178 -0.9820 35 1 -1.2985 -4.2514 0.6756 36 1 1.0734 -6.1277 -0.9480 37 1 0.2009 -6.7063 0.4915 38 1 2.8485 -6.0777 1.2480 39 1 3.9105 -8.4204 2.0523 40 1 4.7836 -7.8424 0.6128 41 1 4.5923 -11.1994 -2.5177 42 1 3.9925 -11.9596 -1.0220 43 1 6.7827 -10.8615 -1.5640 44 1 6.3275 -12.5459 -1.2150 45 1 8.0740 -12.3687 0.5797 46 1 8.3946 -11.9682 2.9852 47 1 6.7626 -10.6061 4.2324 48 1 4.8143 -9.6565 3.0710 49 1 2.8328 -3.7405 0.6138 50 1 2.1663 -4.0420 -1.0202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753138164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:43 Heat of formation + Delta-G solvation = -58.751583 kcal Electronic energy + Delta-G solvation = -29496.221015 eV Core-core repulsion = 25487.563965 eV Total energy + Delta-G solvation = -4008.657050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.55573 -40.50318 -39.23405 -38.38084 -35.98641 -34.74249 -34.26623 -33.18359 -31.74471 -30.94264 -30.06679 -29.18512 -27.26369 -25.72727 -24.83571 -24.51869 -22.82673 -22.02759 -21.41321 -20.98031 -20.88826 -18.89806 -18.42379 -17.80197 -17.51767 -17.00138 -16.89210 -16.61973 -16.43503 -16.06769 -15.86945 -15.52521 -15.28215 -15.02159 -14.71153 -14.51762 -14.28041 -14.12583 -13.95941 -13.82580 -13.48224 -13.44904 -13.25657 -13.05058 -12.95383 -12.74692 -12.64022 -12.60456 -12.35931 -12.01599 -11.92666 -11.85180 -11.80818 -11.53293 -11.52246 -11.44962 -10.84561 -10.70108 -10.54319 -10.00679 -9.69215 -9.53330 -8.89141 -7.84378 -5.19949 0.36966 0.45417 1.46110 1.48277 1.56802 1.72862 2.23779 2.50097 2.74418 2.88219 3.33817 3.55415 3.62762 3.67122 3.82183 3.83735 3.92173 4.02200 4.05038 4.08453 4.15675 4.24839 4.31043 4.33483 4.44991 4.47294 4.61018 4.63831 4.64190 4.68941 4.74310 4.83179 4.84805 4.90580 4.94012 4.98605 5.07694 5.09557 5.09820 5.17987 5.39891 5.46369 5.52331 5.52699 5.61680 5.64130 5.68423 5.78896 6.08755 6.20930 6.21856 6.62819 7.11049 7.33121 7.78898 8.43415 9.26177 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.001956 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.613563 B =14310.021622 C =15008.208209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.241 4.241 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.092 0.908 14 C 0.146 3.854 15 N -0.720 5.720 16 C 0.512 3.488 17 O -0.575 6.575 18 C -0.127 4.127 19 C 0.149 3.851 20 H 0.064 0.936 21 O -0.386 6.386 22 C 0.053 3.947 23 C -0.112 4.112 24 C -0.089 4.089 25 C -0.127 4.127 26 C -0.122 4.122 27 C -0.128 4.128 28 C -0.118 4.118 29 C -0.131 4.131 30 C 0.138 3.862 31 H 0.246 0.754 32 H 0.013 0.987 33 H 0.002 0.998 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.413 0.587 39 H 0.141 0.859 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.145 0.855 48 H 0.142 0.858 49 H 0.051 0.949 50 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.260 -27.655 6.260 31.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.114 4.114 13 H 0.110 0.890 14 C 0.022 3.978 15 N -0.372 5.372 16 C 0.300 3.700 17 O -0.454 6.454 18 C -0.166 4.166 19 C 0.091 3.909 20 H 0.081 0.919 21 O -0.305 6.305 22 C -0.023 4.023 23 C -0.149 4.149 24 C -0.089 4.089 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.146 4.146 28 C -0.135 4.135 29 C -0.131 4.131 30 C 0.013 3.987 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.021 0.979 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.249 0.751 39 H 0.159 0.841 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.157 0.843 46 H 0.162 0.838 47 H 0.162 0.838 48 H 0.160 0.840 49 H 0.069 0.931 50 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 13.698 -27.764 5.639 31.468 hybrid contribution 0.280 1.390 0.019 1.418 sum 13.978 -26.374 5.658 30.381 Atomic orbital electron populations 1.70200 1.06341 1.25213 1.58427 1.25689 0.96653 1.01154 1.02785 0.85064 0.77747 0.79068 0.77371 1.21563 1.22109 1.19054 1.19481 0.91057 0.83747 1.42734 0.89828 1.44822 1.02506 1.01266 1.86982 1.20922 0.83854 0.91812 0.97643 1.22726 0.97342 0.94998 1.01164 1.22406 0.95810 0.92377 1.00767 0.88986 1.21094 0.86543 0.92268 0.97943 1.45973 1.24477 1.13879 1.52910 1.20935 0.87650 0.81409 0.80026 1.90693 1.56125 1.59433 1.39165 1.21862 0.95501 0.95280 1.03985 1.20471 0.94069 0.95247 0.81103 0.91879 1.88125 1.89986 1.31774 1.20587 1.22749 0.94424 0.84799 1.00365 1.21157 0.98047 1.03777 0.91902 1.19775 0.95164 0.97721 0.96201 1.21335 0.97334 1.00480 0.95325 1.21484 0.99839 0.98265 0.94356 1.21438 0.94407 0.97604 1.01130 1.21332 0.98902 1.00119 0.93189 1.20235 0.97232 1.00268 0.95387 1.21740 0.95483 0.84397 0.97086 0.94473 0.96835 0.97928 0.91343 0.89531 0.92959 0.90870 0.75058 0.84130 0.87013 0.87463 0.92779 0.89622 0.87741 0.84278 0.83850 0.83751 0.84018 0.93101 0.96745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.04 10.31 21.65 0.22 -57.81 16 2 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 3 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.24 -13.55 10.28 84.03 0.86 -12.69 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -32.34 3.39 -692.02 -2.35 -34.69 16 10 C 0.18 9.10 5.38 86.73 0.47 9.56 16 11 C -0.12 -4.42 6.42 31.78 0.20 -4.22 16 12 C -0.09 -2.94 3.10 -9.41 -0.03 -2.97 16 13 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 14 C 0.15 3.98 5.12 86.38 0.44 4.43 16 15 N -0.72 -16.74 5.41 -463.07 -2.50 -19.25 16 16 C 0.51 12.99 7.71 87.66 0.68 13.67 16 17 O -0.57 -19.54 15.41 10.89 0.17 -19.37 16 18 C -0.13 -2.28 5.11 29.85 0.15 -2.13 16 19 C 0.15 3.14 2.28 29.83 0.07 3.20 16 20 H 0.06 1.47 7.94 -2.38 -0.02 1.45 16 21 O -0.39 -9.72 9.66 -135.08 -1.30 -11.03 16 22 C 0.05 0.96 6.84 71.97 0.49 1.46 16 23 C -0.11 -1.60 6.01 29.85 0.18 -1.42 16 24 C -0.09 -1.48 5.78 -19.84 -0.11 -1.59 16 25 C -0.13 -1.70 9.67 22.31 0.22 -1.48 16 26 C -0.12 -1.44 10.05 22.23 0.22 -1.22 16 27 C -0.13 -1.54 10.05 22.23 0.22 -1.32 16 28 C -0.12 -1.66 9.07 22.32 0.20 -1.45 16 29 C -0.13 -2.33 5.47 -19.86 -0.11 -2.44 16 30 C 0.14 5.39 6.41 86.85 0.56 5.95 16 31 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.01 0.74 7.38 -2.39 -0.02 0.73 16 33 H 0.00 0.14 7.50 -2.39 -0.02 0.12 16 34 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 35 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.41 7.66 8.34 -92.72 -0.77 6.89 16 39 H 0.14 1.54 6.29 -2.39 -0.01 1.52 16 40 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.05 0.95 8.08 -2.39 -0.02 0.93 16 43 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 46 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 47 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 48 H 0.14 1.39 6.44 -2.91 -0.02 1.37 16 49 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.01 0.60 8.00 -2.38 -0.02 0.58 16 Total: -1.00 -77.05 396.82 1.60 -75.45 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.16 Total: 16.92 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.18 Total: 1.77 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.63 Total: -111.74 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.14 Total: -30.40 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -77.05 1.60 -75.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753138164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.698 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds