Wall clock time and date at job start Wed Apr 1 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48496 * 109.47166 * 239.99648 * 3 2 1 5 5 H 1.48501 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47066 * 119.99694 * 3 2 1 7 7 C 1.38811 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.65022 * 0.02562 * 9 7 2 11 11 C 1.54322 * 107.27148 * 178.92086 * 10 9 7 12 12 C 1.55157 * 102.94344 * 337.81251 * 11 10 9 13 13 H 1.08998 * 111.00531 * 277.38944 * 12 11 10 14 14 C 1.53001 * 111.00731 * 153.57482 * 12 11 10 15 15 C 1.52997 * 109.47181 * 174.99894 * 14 12 11 16 16 N 1.46498 * 109.46946 * 180.02562 * 15 14 12 17 17 C 1.34773 * 120.00120 * 180.02562 * 16 15 14 18 18 O 1.21278 * 119.99967 * 5.08316 * 17 16 15 19 19 C 1.50701 * 120.00282 * 185.08241 * 17 16 15 20 20 H 1.08996 * 109.43896 * 335.52123 * 19 17 16 21 21 C 1.53074 * 109.43989 * 215.59676 * 19 17 16 22 22 C 1.53416 * 108.28434 * 191.74467 * 21 19 17 23 23 O 1.42821 * 108.38375 * 64.73075 * 22 21 19 24 24 C 1.35842 * 117.87856 * 310.90593 * 23 22 21 25 25 C 1.39140 * 118.49793 * 196.77381 * 24 23 22 26 26 C 1.37970 * 120.21884 * 179.97438 * 25 24 23 27 27 C 1.38281 * 119.95433 * 0.43722 * 26 25 24 28 28 C 1.38100 * 119.98679 * 359.71158 * 27 26 25 29 29 C 1.38370 * 121.80734 * 17.05064 * 24 23 22 30 30 C 1.47425 * 125.64630 * 180.02562 * 9 7 2 31 31 H 0.96997 * 120.00064 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.87592 * 59.50575 * 10 9 7 33 33 H 1.08999 * 109.88038 * 298.34427 * 10 9 7 34 34 H 1.08998 * 110.72210 * 219.44365 * 11 10 9 35 35 H 1.08999 * 110.87016 * 96.24551 * 11 10 9 36 36 H 1.09001 * 109.46908 * 54.99449 * 14 12 11 37 37 H 1.09001 * 109.46544 * 295.00033 * 14 12 11 38 38 H 1.08998 * 109.47094 * 59.99819 * 15 14 12 39 39 H 1.09000 * 109.46974 * 299.99597 * 15 14 12 40 40 H 0.97007 * 120.00016 * 359.97438 * 16 15 14 41 41 H 1.08996 * 109.70382 * 72.04618 * 21 19 17 42 42 H 1.09005 * 109.70332 * 311.43477 * 21 19 17 43 43 H 1.09007 * 109.67815 * 305.01108 * 22 21 19 44 44 H 1.08998 * 109.68109 * 184.46055 * 22 21 19 45 45 H 1.08006 * 119.89285 * 0.18783 * 25 24 23 46 46 H 1.08004 * 120.02084 * 180.19688 * 26 25 24 47 47 H 1.08008 * 120.00812 * 179.73059 * 27 26 25 48 48 H 1.08005 * 119.84678 * 180.02562 * 28 27 26 49 49 H 1.09000 * 110.36838 * 85.31143 * 30 9 7 50 50 H 1.09001 * 110.36771 * 322.98115 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 -0.0278 12 6 0.8525 -4.6560 -0.6116 13 1 0.8581 -4.5966 -1.6999 14 6 1.0373 -6.1008 -0.1432 15 6 2.2586 -6.7091 -0.8354 16 7 2.4351 -8.0927 -0.3874 17 6 3.4552 -8.8314 -0.8671 18 8 4.2799 -8.3245 -1.5977 19 6 3.5711 -10.2873 -0.4957 20 1 3.0585 -10.4623 0.4501 21 6 5.0486 -10.6602 -0.3511 22 6 5.1535 -12.1885 -0.2679 23 8 4.7136 -12.7385 -1.5103 24 6 3.5321 -12.2992 -2.0166 25 6 2.9157 -13.0512 -3.0120 26 6 1.7147 -12.6382 -3.5510 27 6 1.1248 -11.4687 -3.1078 28 6 1.7351 -10.7182 -2.1222 29 6 2.9379 -11.1309 -1.5732 30 6 1.9336 -3.7311 0.0016 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5568 -2.0520 -0.8843 33 1 -0.5550 -2.0846 0.9011 34 1 -1.2979 -4.2514 -0.6785 35 1 -0.6340 -4.4206 0.9781 36 1 0.1498 -6.6810 -0.3961 37 1 1.1861 -6.1165 0.9364 38 1 3.1460 -6.1288 -0.5825 39 1 2.1097 -6.6934 -1.9151 40 1 1.8182 -8.4769 0.2552 41 1 5.4530 -10.2141 0.5575 42 1 5.6049 -10.3005 -1.2168 43 1 4.5216 -12.5563 0.5407 44 1 6.1888 -12.4760 -0.0850 45 1 3.3774 -13.9629 -3.3615 46 1 1.2375 -13.2261 -4.3212 47 1 0.1867 -11.1424 -3.5322 48 1 1.2721 -9.8054 -1.7775 49 1 2.1653 -4.0418 1.0204 50 1 2.8338 -3.7405 -0.6129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753336899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:01 Heat of formation + Delta-G solvation = -35.068768 kcal Electronic energy + Delta-G solvation = -29564.797217 eV Core-core repulsion = 25557.167131 eV Total energy + Delta-G solvation = -4007.630086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.40505 -39.55803 -37.84669 -37.81830 -35.34293 -34.57729 -33.00323 -31.13844 -30.76333 -30.56752 -29.02587 -27.32724 -26.13331 -24.66161 -24.07600 -23.04105 -22.26491 -21.16273 -20.17692 -19.98686 -19.44695 -18.32617 -17.27786 -17.10301 -16.84714 -16.47741 -15.95708 -15.55018 -15.29701 -14.95579 -14.56649 -14.53471 -14.21175 -14.07467 -13.83278 -13.73008 -13.56667 -13.40346 -12.80909 -12.48856 -12.29856 -12.24968 -11.96697 -11.88664 -11.82101 -11.56443 -11.41710 -11.26141 -11.11895 -11.00669 -10.86445 -10.74248 -10.17798 -10.15308 -9.97202 -9.83957 -9.74847 -9.59985 -9.17994 -9.14413 -8.56923 -8.50740 -6.79483 -5.68133 -3.01299 0.91511 1.08757 2.40881 2.84766 2.99274 3.42726 3.43233 3.46698 3.48039 4.07862 4.20932 4.29023 4.47564 4.52886 4.69618 4.73522 4.75487 4.83715 4.92182 5.04902 5.07363 5.10789 5.12054 5.17734 5.27544 5.46373 5.49633 5.59866 5.62136 5.64849 5.72221 5.76128 5.86969 5.92183 6.01077 6.05939 6.10055 6.19305 6.19747 6.33229 6.39765 6.41582 6.56036 6.60339 6.74377 6.98253 7.06487 7.29837 7.59167 7.66040 7.85465 8.02711 8.29805 9.25817 9.86295 10.52677 11.43635 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.001902 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.274368 B =14717.247568 C =15464.879411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.100 4.100 13 H 0.076 0.924 14 C -0.116 4.116 15 C 0.116 3.884 16 N -0.729 5.729 17 C 0.522 3.478 18 O -0.529 6.529 19 C -0.062 4.062 20 H 0.101 0.899 21 C -0.149 4.149 22 C 0.064 3.936 23 O -0.315 6.315 24 C 0.142 3.858 25 C -0.151 4.151 26 C -0.083 4.083 27 C -0.150 4.150 28 C -0.081 4.081 29 C -0.151 4.151 30 C 0.140 3.860 31 H 0.252 0.748 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.113 0.887 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.126 0.874 48 H 0.126 0.874 49 H 0.017 0.983 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 -29.894 -0.715 30.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.120 4.120 13 H 0.094 0.906 14 C -0.154 4.154 15 C -0.006 4.006 16 N -0.380 5.380 17 C 0.307 3.693 18 O -0.404 6.404 19 C -0.084 4.084 20 H 0.119 0.881 21 C -0.187 4.187 22 C -0.011 4.011 23 O -0.229 6.229 24 C 0.097 3.903 25 C -0.169 4.169 26 C -0.101 4.101 27 C -0.168 4.168 28 C -0.099 4.099 29 C -0.152 4.152 30 C 0.014 3.986 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.131 0.869 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.144 0.856 48 H 0.144 0.856 49 H 0.034 0.966 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.455 -29.387 -1.334 29.620 hybrid contribution -0.012 1.024 0.522 1.150 sum 3.443 -28.363 -0.813 28.583 Atomic orbital electron populations 1.69960 1.04866 1.25061 1.57246 1.24806 0.95737 0.97667 1.02396 0.86196 0.78439 0.83208 0.77911 1.21167 1.21618 1.21200 1.19029 0.90417 0.82513 1.43614 0.90548 1.44488 1.01749 0.99952 1.87145 1.21132 0.84353 0.88356 1.00929 1.22898 0.95908 0.99507 0.99340 1.22275 0.97679 0.91913 1.00184 0.90602 1.21747 0.96442 0.96654 1.00560 1.21531 0.99438 0.80394 0.99283 1.46188 1.30592 1.14503 1.46741 1.20190 0.81107 0.87517 0.80455 1.90729 1.40439 1.72847 1.36412 1.20146 0.97936 0.91839 0.98429 0.88131 1.22193 0.94678 0.96326 1.05472 1.23006 1.01279 0.92690 0.84114 1.85993 1.34642 1.64117 1.38153 1.18630 0.85397 0.91952 0.94354 1.20600 0.96371 1.01004 0.98940 1.20981 0.94323 0.96176 0.98654 1.21041 1.01128 0.95946 0.98665 1.21023 0.93786 0.99289 0.95851 1.19326 0.97778 0.95981 1.02141 1.21616 0.94323 0.86138 0.96550 0.93770 0.93698 0.94105 0.92372 0.92600 0.91651 0.91260 0.90814 0.91436 0.76643 0.89160 0.88606 0.91543 0.86924 0.85062 0.85230 0.85575 0.85619 0.96551 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 10.31 55.49 0.57 -26.96 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.78 3.39 -170.06 -0.58 -16.35 16 10 C 0.18 4.32 5.37 -3.06 -0.02 4.31 16 11 C -0.14 -2.49 6.42 -24.90 -0.16 -2.65 16 12 C -0.10 -1.66 3.01 -88.46 -0.27 -1.92 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.12 -1.38 4.84 -26.73 -0.13 -1.51 16 15 C 0.12 1.42 5.58 -4.04 -0.02 1.40 16 16 N -0.73 -7.20 4.83 -60.30 -0.29 -7.49 16 17 C 0.52 6.12 5.79 -10.99 -0.06 6.06 16 18 O -0.53 -8.59 16.07 5.56 0.09 -8.50 16 19 C -0.06 -0.55 2.72 -92.85 -0.25 -0.80 16 20 H 0.10 0.62 8.08 -51.93 -0.42 0.20 16 21 C -0.15 -1.22 5.35 -26.48 -0.14 -1.36 16 22 C 0.06 0.43 7.03 37.37 0.26 0.69 16 23 O -0.32 -3.05 10.27 -19.25 -0.20 -3.25 16 24 C 0.14 1.44 6.47 -39.20 -0.25 1.19 16 25 C -0.15 -1.34 9.94 -39.34 -0.39 -1.73 16 26 C -0.08 -0.66 10.04 -39.66 -0.40 -1.06 16 27 C -0.15 -1.27 10.04 -39.62 -0.40 -1.67 16 28 C -0.08 -0.77 9.10 -39.53 -0.36 -1.13 16 29 C -0.15 -1.50 5.42 -104.44 -0.57 -2.07 16 30 C 0.14 2.88 6.19 -2.52 -0.02 2.87 16 31 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 33 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 38 H 0.07 1.05 7.75 -51.93 -0.40 0.65 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.40 2.73 8.43 -40.82 -0.34 2.39 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.10 1.03 7.46 -51.93 -0.39 0.65 16 43 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 44 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 47 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 48 H 0.13 1.10 6.79 -52.48 -0.36 0.74 16 49 H 0.02 0.34 7.91 -51.93 -0.41 -0.07 16 50 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -34.91 397.57 -10.98 -45.89 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.12 Total: -0.37 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.42 Total: -6.41 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.30 Total: -50.81 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.11 Total: -11.75 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.91 -10.98 -45.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753336899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.825 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds