Wall clock time and date at job start Wed Apr 1 2020 02:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48504 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47157 * 300.00092 * 3 2 1 6 6 H 1.48504 * 109.46861 * 59.99848 * 3 2 1 7 7 C 1.38818 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.47017 * 125.64755 * 359.97438 * 9 7 2 11 11 C 1.54326 * 107.27078 * 178.98277 * 10 9 7 12 12 C 1.55158 * 102.94208 * 337.80609 * 11 10 9 13 13 H 1.08996 * 111.00522 * 277.39198 * 12 11 10 14 14 C 1.52991 * 111.00621 * 153.57480 * 12 11 10 15 15 C 1.52996 * 109.47421 * 175.00137 * 14 12 11 16 16 N 1.46503 * 109.47613 * 180.02562 * 15 14 12 17 17 C 1.34767 * 120.00539 * 179.97438 * 16 15 14 18 18 O 1.21281 * 119.99831 * 5.11403 * 17 16 15 19 19 C 1.50701 * 120.00591 * 185.11268 * 17 16 15 20 20 H 1.09004 * 109.39940 * 24.54702 * 19 17 16 21 21 C 1.53068 * 109.44035 * 144.43911 * 19 17 16 22 22 C 1.53405 * 108.32676 * 168.30944 * 21 19 17 23 23 O 1.42841 * 108.37735 * 295.26037 * 22 21 19 24 24 C 1.35838 * 117.85612 * 49.18395 * 23 22 21 25 25 C 1.39146 * 118.50271 * 162.83080 * 24 23 22 26 26 C 1.37968 * 120.21705 * 179.84017 * 25 24 23 27 27 C 1.38281 * 119.96266 * 359.95538 * 26 25 24 28 28 C 1.38103 * 119.98136 * 0.07165 * 27 26 25 29 29 C 1.38378 * 121.80816 * 342.76280 * 24 23 22 30 30 C 1.47425 * 125.64389 * 180.02562 * 9 7 2 31 31 H 0.96997 * 120.00387 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.88362 * 59.56634 * 10 9 7 33 33 H 1.09003 * 110.01300 * 298.47246 * 10 9 7 34 34 H 1.09001 * 110.72167 * 219.44826 * 11 10 9 35 35 H 1.08998 * 110.71914 * 96.16639 * 11 10 9 36 36 H 1.09000 * 109.47300 * 54.99926 * 14 12 11 37 37 H 1.09002 * 109.47069 * 295.00238 * 14 12 11 38 38 H 1.09000 * 109.47509 * 59.99920 * 15 14 12 39 39 H 1.09002 * 109.47081 * 300.00093 * 15 14 12 40 40 H 0.97007 * 119.99261 * 0.02562 * 16 15 14 41 41 H 1.09000 * 109.69619 * 48.58799 * 21 19 17 42 42 H 1.09001 * 109.69884 * 288.03176 * 21 19 17 43 43 H 1.08997 * 109.68673 * 54.98707 * 22 21 19 44 44 H 1.09005 * 109.68743 * 175.54283 * 22 21 19 45 45 H 1.08001 * 119.89004 * 359.81377 * 25 24 23 46 46 H 1.08011 * 120.01823 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.01232 * 180.02562 * 27 26 25 48 48 H 1.07999 * 119.84785 * 180.02562 * 28 27 26 49 49 H 1.09004 * 110.36001 * 85.25334 * 30 9 7 50 50 H 1.08991 * 110.36834 * 322.92949 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4483 -4.0442 -0.0261 12 6 0.8516 -4.6562 -0.6117 13 1 0.8555 -4.5969 -1.7001 14 6 1.0371 -6.1008 -0.1435 15 6 2.2574 -6.7092 -0.8373 16 7 2.4347 -8.0928 -0.3894 17 6 3.4534 -8.8319 -0.8713 18 8 4.2768 -8.3252 -1.6035 19 6 3.5695 -10.2879 -0.5005 20 1 2.5856 -10.6726 -0.2316 21 6 4.1157 -11.0756 -1.6938 22 6 4.5000 -12.4797 -1.2098 23 8 5.5746 -12.3560 -0.2770 24 6 5.4424 -11.4508 0.7272 25 6 6.2804 -11.5583 1.8327 26 6 6.1789 -10.6559 2.8714 27 6 5.2424 -9.6401 2.8146 28 6 4.4085 -9.5305 1.7192 29 6 4.5042 -10.4349 0.6745 30 6 1.9337 -3.7311 -0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5581 -2.0522 -0.8827 33 1 -0.5560 -2.0840 0.9014 34 1 -1.2988 -4.2516 -0.6756 35 1 -0.6307 -4.4182 0.9814 36 1 0.1493 -6.6811 -0.3949 37 1 1.1876 -6.1164 0.9360 38 1 3.1453 -6.1290 -0.5859 39 1 2.1070 -6.6936 -1.9168 40 1 1.8184 -8.4771 0.2536 41 1 4.9950 -10.5718 -2.0952 42 1 3.3503 -11.1499 -2.4663 43 1 3.6439 -12.9477 -0.7239 44 1 4.8181 -13.0862 -2.0579 45 1 7.0125 -12.3511 1.8781 46 1 6.8307 -10.7426 3.7282 47 1 5.1625 -8.9329 3.6271 48 1 3.6782 -8.7361 1.6769 49 1 2.1671 -4.0417 1.0179 50 1 2.8328 -3.7405 -0.6165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753336900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:04 Heat of formation + Delta-G solvation = -35.202492 kcal Electronic energy + Delta-G solvation = -29629.795171 eV Core-core repulsion = 25622.159286 eV Total energy + Delta-G solvation = -4007.635885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.39032 -39.55406 -37.82961 -37.81798 -35.34280 -34.57068 -33.00552 -31.13430 -30.75373 -30.54463 -29.02711 -27.32117 -26.13612 -24.66731 -24.05894 -23.02433 -22.24837 -21.17928 -20.16726 -19.98818 -19.44378 -18.31162 -17.27620 -17.08308 -16.85751 -16.46434 -15.95871 -15.54952 -15.28304 -14.91491 -14.61749 -14.46577 -14.27022 -14.05935 -13.88015 -13.69328 -13.57008 -13.30449 -12.82029 -12.48935 -12.30188 -12.24540 -11.98166 -11.85827 -11.82920 -11.54851 -11.41399 -11.25518 -11.12691 -10.99160 -10.85487 -10.77396 -10.17669 -10.11557 -9.94982 -9.84015 -9.75218 -9.60550 -9.18657 -9.11830 -8.57661 -8.48773 -6.79468 -5.68523 -3.01528 0.93879 1.11221 2.40771 2.85507 2.99767 3.41622 3.45481 3.47357 3.49789 4.08337 4.21336 4.29323 4.48325 4.52767 4.69920 4.73918 4.78234 4.84347 4.92324 5.06125 5.07242 5.11955 5.13632 5.18895 5.27709 5.46861 5.49558 5.59595 5.64452 5.64821 5.72036 5.75654 5.86942 5.94395 6.00787 6.08370 6.09892 6.19713 6.22518 6.33208 6.39653 6.43838 6.55807 6.60341 6.74443 6.98111 7.07958 7.29680 7.59937 7.65702 7.85837 8.02631 8.29407 9.25708 9.86148 10.52411 11.43404 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017694 B = 0.002001 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.074838 B =13990.924698 C =14638.183664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.100 4.100 13 H 0.076 0.924 14 C -0.116 4.116 15 C 0.116 3.884 16 N -0.729 5.729 17 C 0.522 3.478 18 O -0.529 6.529 19 C -0.062 4.062 20 H 0.101 0.899 21 C -0.148 4.148 22 C 0.064 3.936 23 O -0.315 6.315 24 C 0.141 3.859 25 C -0.150 4.150 26 C -0.083 4.083 27 C -0.148 4.148 28 C -0.081 4.081 29 C -0.152 4.152 30 C 0.140 3.860 31 H 0.251 0.749 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.399 0.601 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.125 0.875 49 H 0.017 0.983 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -29.037 2.270 29.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.120 4.120 13 H 0.094 0.906 14 C -0.154 4.154 15 C -0.006 4.006 16 N -0.380 5.380 17 C 0.307 3.693 18 O -0.404 6.404 19 C -0.083 4.083 20 H 0.119 0.881 21 C -0.186 4.186 22 C -0.011 4.011 23 O -0.229 6.229 24 C 0.096 3.904 25 C -0.169 4.169 26 C -0.101 4.101 27 C -0.166 4.166 28 C -0.100 4.100 29 C -0.153 4.153 30 C 0.014 3.986 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.233 0.767 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.130 0.870 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.145 0.855 48 H 0.143 0.857 49 H 0.035 0.965 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.589 -28.535 1.663 29.124 hybrid contribution -0.209 0.963 0.276 1.024 sum 5.380 -27.571 1.938 28.158 Atomic orbital electron populations 1.69977 1.04875 1.24823 1.57439 1.24806 0.95734 0.97673 1.02443 0.86049 0.78762 0.83806 0.77209 1.20492 1.21771 1.21792 1.19126 0.90481 0.82486 1.43314 0.90433 1.44497 1.01748 0.99976 1.87107 1.21128 0.84367 0.88365 1.00949 1.22901 0.95918 0.99514 0.99327 1.22271 0.97681 0.91916 1.00178 0.90607 1.21745 0.96467 0.96653 1.00542 1.21533 0.99421 0.80399 0.99290 1.46194 1.30735 1.14533 1.46585 1.20194 0.81024 0.87758 0.80278 1.90730 1.40151 1.72863 1.36680 1.20177 0.99673 0.93857 0.94641 0.88109 1.22178 1.03964 0.95595 0.96861 1.22998 0.89433 0.96725 0.91919 1.85999 1.43113 1.56116 1.37681 1.18623 0.94868 0.88844 0.88075 1.20603 1.01802 1.02186 0.92297 1.20989 0.97574 0.93799 0.97759 1.21058 0.97107 0.99534 0.98936 1.21014 0.98842 0.97394 0.92711 1.19353 1.00796 0.98302 0.96873 1.21614 0.94311 0.86124 0.96573 0.93878 0.93720 0.94104 0.92355 0.92585 0.91640 0.91273 0.90828 0.91417 0.76663 0.88612 0.89243 0.91565 0.86953 0.85066 0.85203 0.85482 0.85678 0.96540 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 10.31 55.49 0.57 -26.97 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.61 -15.76 3.39 -170.07 -0.58 -16.34 16 10 C 0.18 4.31 5.37 -3.07 -0.02 4.30 16 11 C -0.14 -2.49 6.42 -24.89 -0.16 -2.65 16 12 C -0.10 -1.66 3.01 -88.47 -0.27 -1.92 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.12 -1.38 4.84 -26.74 -0.13 -1.51 16 15 C 0.12 1.42 5.58 -4.04 -0.02 1.40 16 16 N -0.73 -7.22 4.85 -60.29 -0.29 -7.52 16 17 C 0.52 6.13 5.80 -10.99 -0.06 6.07 16 18 O -0.53 -8.60 16.07 5.56 0.09 -8.51 16 19 C -0.06 -0.55 2.70 -92.81 -0.25 -0.80 16 20 H 0.10 0.62 8.13 -51.93 -0.42 0.19 16 21 C -0.15 -1.20 5.34 -26.49 -0.14 -1.34 16 22 C 0.06 0.42 7.03 37.37 0.26 0.69 16 23 O -0.32 -3.08 10.27 -19.23 -0.20 -3.28 16 24 C 0.14 1.46 6.47 -39.19 -0.25 1.21 16 25 C -0.15 -1.39 9.94 -39.34 -0.39 -1.78 16 26 C -0.08 -0.69 10.04 -39.66 -0.40 -1.09 16 27 C -0.15 -1.34 10.04 -39.62 -0.40 -1.74 16 28 C -0.08 -0.81 9.10 -39.53 -0.36 -1.17 16 29 C -0.15 -1.54 5.43 -104.39 -0.57 -2.11 16 30 C 0.14 2.88 6.19 -2.52 -0.02 2.87 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 33 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.93 8.04 -51.93 -0.42 0.52 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 38 H 0.07 1.06 7.75 -51.93 -0.40 0.65 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.40 2.76 8.42 -40.82 -0.34 2.42 16 41 H 0.10 1.03 7.46 -51.93 -0.39 0.64 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 47 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.13 1.15 6.76 -52.49 -0.35 0.79 16 49 H 0.02 0.34 7.91 -51.93 -0.41 -0.07 16 50 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 397.60 15.07 5.99 5.99 Total: -1.00 -34.96 397.60 -10.98 -45.94 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.12 Total: -0.25 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -3.42 Total: -6.57 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.30 Total: -50.82 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.11 Total: -11.79 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.96 -10.98 -45.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753336900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.742 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds