Wall clock time and date at job start Wed Apr 1 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00258 * 2 1 4 4 H 1.48500 * 109.47280 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47296 * 299.99889 * 3 2 1 6 6 H 1.48502 * 109.47335 * 59.99968 * 3 2 1 7 7 C 1.38810 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99884 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00346 * 359.72254 * 7 2 1 10 10 C 1.47427 * 125.64482 * 359.69807 * 9 7 2 11 11 C 1.55125 * 104.72366 * 155.81728 * 10 9 7 12 12 C 1.55156 * 101.48514 * 37.29138 * 11 10 9 13 13 H 1.08999 * 110.72087 * 82.70185 * 12 11 10 14 14 C 1.52999 * 110.86998 * 205.90038 * 12 11 10 15 15 C 1.53001 * 109.47258 * 180.02562 * 14 12 11 16 16 N 1.46503 * 109.47487 * 179.97438 * 15 14 12 17 17 C 1.34771 * 119.99995 * 180.02562 * 16 15 14 18 18 O 1.21283 * 120.00266 * 354.91464 * 17 16 15 19 19 C 1.50702 * 119.99674 * 174.91569 * 17 16 15 20 20 H 1.08997 * 109.44462 * 24.48613 * 19 17 16 21 21 C 1.53076 * 109.44117 * 144.41271 * 19 17 16 22 22 C 1.53410 * 108.28017 * 168.31696 * 21 19 17 23 23 O 1.42817 * 108.38913 * 295.25612 * 22 21 19 24 24 C 1.35849 * 117.87636 * 49.07203 * 23 22 21 25 25 C 1.39146 * 118.50376 * 163.06080 * 24 23 22 26 26 C 1.37811 * 120.25590 * 179.67371 * 25 24 23 27 27 C 1.38286 * 119.94672 * 0.10377 * 26 25 24 28 28 C 1.38110 * 119.98211 * 0.02562 * 27 26 25 29 29 C 1.38317 * 121.79195 * 342.95688 * 24 23 22 30 30 C 1.47021 * 125.65045 * 179.97438 * 9 7 2 31 31 H 0.97004 * 120.00094 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.36355 * 274.74417 * 10 9 7 33 33 H 1.08998 * 110.36518 * 37.06312 * 10 9 7 34 34 H 1.09000 * 111.19053 * 279.18851 * 11 10 9 35 35 H 1.08997 * 110.93872 * 155.28993 * 11 10 9 36 36 H 1.09003 * 109.47481 * 300.06741 * 14 12 11 37 37 H 1.09000 * 109.47545 * 60.06364 * 14 12 11 38 38 H 1.09001 * 109.46871 * 300.00019 * 15 14 12 39 39 H 1.09005 * 109.46695 * 59.99913 * 15 14 12 40 40 H 0.96999 * 119.99707 * 359.97438 * 16 15 14 41 41 H 1.09003 * 109.69921 * 288.02021 * 21 19 17 42 42 H 1.09001 * 109.70464 * 48.57772 * 21 19 17 43 43 H 1.08999 * 109.67788 * 54.98779 * 22 21 19 44 44 H 1.08998 * 109.67906 * 175.53202 * 22 21 19 45 45 H 1.08005 * 119.89188 * 359.75475 * 25 24 23 46 46 H 1.07998 * 120.03442 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.00828 * 180.02562 * 27 26 25 48 48 H 1.07996 * 119.84583 * 179.97438 * 28 27 26 49 49 H 1.08998 * 109.88596 * 300.44309 * 30 9 7 50 50 H 1.08999 * 109.88084 * 61.45779 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 0.0047 10 6 -0.1415 -2.5331 0.0174 11 6 -0.4046 -3.9335 -0.5958 12 6 0.7782 -4.7524 -0.0147 13 1 0.5504 -5.0960 0.9944 14 6 1.1204 -5.9353 -0.9227 15 6 2.2879 -6.7196 -0.3204 16 7 2.6152 -7.8526 -1.1896 17 6 3.6179 -8.6894 -0.8569 18 8 4.3087 -8.4534 0.1116 19 6 3.8807 -9.9185 -1.6885 20 1 3.5022 -9.7610 -2.6984 21 6 5.3874 -10.1830 -1.7446 22 6 5.6088 -11.5808 -2.3368 23 8 5.0590 -12.5437 -1.4368 24 6 3.7963 -12.3379 -0.9800 25 6 3.1149 -13.4072 -0.4069 26 6 1.8348 -13.2371 0.0744 27 6 1.2229 -12.0001 -0.0137 28 6 1.8947 -10.9368 -0.5842 29 6 3.1814 -11.1021 -1.0694 30 6 1.9317 -3.7275 0.0042 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5184 -2.4870 1.0392 33 1 -0.6046 -1.7586 -0.5939 34 1 -0.3601 -3.9016 -1.6844 35 1 -1.3604 -4.3336 -0.2575 36 1 0.2517 -6.5876 -1.0127 37 1 1.4016 -5.5667 -1.9092 38 1 3.1564 -6.0669 -0.2311 39 1 2.0074 -7.0882 0.6663 40 1 2.1098 -8.0009 -2.0041 41 1 5.8684 -9.4359 -2.3760 42 1 5.8060 -10.1388 -0.7392 43 1 5.1089 -11.6536 -3.3027 44 1 6.6764 -11.7620 -2.4610 45 1 3.5912 -14.3740 -0.3376 46 1 1.3094 -14.0694 0.5189 47 1 0.2199 -11.8656 0.3636 48 1 1.4145 -9.9719 -0.6523 49 1 2.5537 -3.8527 -0.8821 50 1 2.5349 -3.8617 0.9022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753336901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:08 Heat of formation + Delta-G solvation = -33.926647 kcal Electronic energy + Delta-G solvation = -29607.286738 eV Core-core repulsion = 25599.706178 eV Total energy + Delta-G solvation = -4007.580560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.40519 -39.55630 -37.85352 -37.83469 -35.32652 -34.57377 -33.03191 -31.13357 -30.75571 -30.56893 -29.03553 -27.29133 -26.10542 -24.70315 -24.07600 -23.03891 -22.28198 -21.15725 -20.15074 -20.10077 -19.29381 -18.31378 -17.26138 -17.10117 -16.87788 -16.46897 -15.96288 -15.64980 -15.29727 -15.00161 -14.61703 -14.50769 -14.20299 -14.08437 -13.79221 -13.68647 -13.53812 -13.34686 -12.80115 -12.54000 -12.29544 -12.28394 -11.93674 -11.88474 -11.72777 -11.59051 -11.42396 -11.25534 -11.07861 -11.00156 -10.90757 -10.76927 -10.22255 -10.12688 -9.97165 -9.88560 -9.74766 -9.45460 -9.17348 -9.14564 -8.64168 -8.50647 -6.80491 -5.63476 -3.05100 0.91827 1.08662 2.41545 2.85364 2.99916 3.40365 3.43425 3.46019 3.48526 4.08581 4.21376 4.29674 4.48076 4.50678 4.70245 4.73751 4.75626 4.84532 4.94100 5.05331 5.07705 5.11122 5.12676 5.18206 5.28065 5.46765 5.49059 5.59079 5.61720 5.62492 5.72943 5.77048 5.88049 5.92382 6.00405 6.06132 6.15922 6.19289 6.20980 6.34859 6.38693 6.41593 6.60758 6.63795 6.77576 6.98382 7.06686 7.30754 7.53942 7.65795 7.87551 8.03439 8.38922 9.24521 9.85594 10.50826 11.40213 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.001930 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.690226 B =14507.790005 C =15453.963499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.150 3.850 11 C -0.138 4.138 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.116 4.116 15 C 0.116 3.884 16 N -0.728 5.728 17 C 0.523 3.477 18 O -0.529 6.529 19 C -0.062 4.062 20 H 0.101 0.899 21 C -0.149 4.149 22 C 0.064 3.936 23 O -0.315 6.315 24 C 0.142 3.858 25 C -0.150 4.150 26 C -0.083 4.083 27 C -0.150 4.150 28 C -0.081 4.081 29 C -0.151 4.151 30 C 0.140 3.860 31 H 0.251 0.749 32 H 0.010 0.990 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.113 0.887 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.126 0.874 48 H 0.126 0.874 49 H 0.022 0.978 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 -28.387 -6.658 29.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.025 3.975 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.090 0.910 14 C -0.154 4.154 15 C -0.007 4.007 16 N -0.380 5.380 17 C 0.307 3.693 18 O -0.405 6.405 19 C -0.084 4.084 20 H 0.119 0.881 21 C -0.187 4.187 22 C -0.011 4.011 23 O -0.229 6.229 24 C 0.097 3.903 25 C -0.169 4.169 26 C -0.101 4.101 27 C -0.168 4.168 28 C -0.100 4.100 29 C -0.152 4.152 30 C 0.014 3.986 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.131 0.869 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.144 0.856 48 H 0.144 0.856 49 H 0.040 0.960 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.260 -28.117 -5.888 29.041 hybrid contribution 0.101 1.087 -0.372 1.154 sum 4.362 -27.030 -6.260 28.086 Atomic orbital electron populations 1.69803 1.04880 1.24561 1.57976 1.24789 0.95745 0.97724 1.02643 0.85999 0.78676 0.83631 0.77229 1.20536 1.21769 1.21768 1.19144 0.90545 0.82548 1.42574 0.90502 1.44539 1.02041 0.99829 1.86751 1.21989 0.84727 0.92692 0.98080 1.23070 0.95803 0.98872 0.99937 1.22089 0.97558 0.93733 0.98330 0.90993 1.21781 0.96702 0.96934 0.99956 1.21546 0.98847 0.86844 0.93478 1.46184 1.35509 1.29170 1.27124 1.20187 0.80110 0.83563 0.85392 1.90727 1.47221 1.74236 1.28288 1.20146 0.97143 0.91503 0.99572 0.88114 1.22192 0.93963 0.97762 1.04759 1.23003 0.99866 0.86875 0.91339 1.85994 1.26573 1.49346 1.60994 1.18621 0.84011 0.92479 0.95204 1.20563 0.95008 0.97842 1.03484 1.20942 0.93995 0.97555 0.97649 1.21041 1.00727 0.93040 1.01990 1.21024 0.93154 0.99398 0.96382 1.19316 0.96224 0.92967 1.06696 1.21361 0.93671 0.85937 0.97668 0.93839 0.97153 0.87573 0.92192 0.92526 0.91650 0.91167 0.90755 0.91498 0.76629 0.89151 0.88610 0.91533 0.86920 0.85072 0.85237 0.85589 0.85630 0.96000 0.96302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.08 55.49 0.56 -26.62 16 2 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 7 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.61 -15.76 3.39 -169.93 -0.58 -16.34 16 10 C 0.15 3.66 5.91 -2.41 -0.01 3.64 16 11 C -0.14 -2.53 6.55 -24.47 -0.16 -2.69 16 12 C -0.10 -1.62 2.97 -88.79 -0.26 -1.88 16 13 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.12 -1.42 4.73 -26.73 -0.13 -1.55 16 15 C 0.12 1.44 5.53 -4.04 -0.02 1.42 16 16 N -0.73 -7.40 4.83 -60.29 -0.29 -7.69 16 17 C 0.52 6.23 5.79 -10.99 -0.06 6.16 16 18 O -0.53 -8.68 16.07 5.56 0.09 -8.59 16 19 C -0.06 -0.56 2.72 -92.85 -0.25 -0.81 16 20 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 21 C -0.15 -1.25 5.35 -26.48 -0.14 -1.39 16 22 C 0.06 0.44 7.03 37.37 0.26 0.70 16 23 O -0.32 -3.08 10.27 -19.27 -0.20 -3.28 16 24 C 0.14 1.45 6.47 -39.22 -0.25 1.20 16 25 C -0.15 -1.34 9.93 -39.40 -0.39 -1.74 16 26 C -0.08 -0.66 10.03 -39.72 -0.40 -1.06 16 27 C -0.15 -1.27 10.04 -39.61 -0.40 -1.67 16 28 C -0.08 -0.78 9.10 -39.53 -0.36 -1.14 16 29 C -0.15 -1.51 5.42 -104.46 -0.57 -2.08 16 30 C 0.14 2.92 5.98 -3.07 -0.02 2.91 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.11 2.91 5.85 -51.93 -0.30 2.60 16 34 H 0.06 1.07 8.05 -51.93 -0.42 0.66 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 38 H 0.07 1.09 7.49 -51.93 -0.39 0.70 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.40 2.86 8.43 -40.82 -0.34 2.52 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 1.05 7.46 -51.93 -0.39 0.66 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 47 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.13 1.10 6.79 -52.49 -0.36 0.75 16 49 H 0.02 0.46 7.76 -51.93 -0.40 0.05 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -34.51 396.40 -10.94 -45.46 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.06 Total: 0.61 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -3.42 Total: -6.85 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.31 Total: -50.65 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.11 Total: -11.87 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.51 -10.94 -45.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753336901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.532 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds