Wall clock time and date at job start Wed Apr 1 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00258 * 2 1 4 4 H 1.48500 * 109.47280 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47296 * 299.99889 * 3 2 1 6 6 H 1.48502 * 109.47335 * 59.99968 * 3 2 1 7 7 C 1.38810 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99884 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00346 * 359.72254 * 7 2 1 10 10 C 1.47427 * 125.64482 * 359.69807 * 9 7 2 11 11 C 1.55125 * 104.72366 * 155.81728 * 10 9 7 12 12 C 1.55156 * 101.48514 * 37.29138 * 11 10 9 13 13 H 1.08999 * 110.72087 * 82.70185 * 12 11 10 14 14 C 1.52999 * 110.86998 * 205.90038 * 12 11 10 15 15 C 1.53001 * 109.47258 * 180.02562 * 14 12 11 16 16 N 1.46503 * 109.47487 * 179.97438 * 15 14 12 17 17 C 1.34771 * 119.99995 * 180.02562 * 16 15 14 18 18 O 1.21283 * 120.00266 * 354.91464 * 17 16 15 19 19 C 1.50702 * 119.99674 * 174.91569 * 17 16 15 20 20 H 1.08997 * 109.44462 * 24.48613 * 19 17 16 21 21 C 1.53076 * 109.44117 * 144.41271 * 19 17 16 22 22 C 1.53410 * 108.28017 * 168.31696 * 21 19 17 23 23 O 1.42817 * 108.38913 * 295.25612 * 22 21 19 24 24 C 1.35849 * 117.87636 * 49.07203 * 23 22 21 25 25 C 1.39146 * 118.50376 * 163.06080 * 24 23 22 26 26 C 1.37811 * 120.25590 * 179.67371 * 25 24 23 27 27 C 1.38286 * 119.94672 * 0.10377 * 26 25 24 28 28 C 1.38110 * 119.98211 * 0.02562 * 27 26 25 29 29 C 1.38317 * 121.79195 * 342.95688 * 24 23 22 30 30 C 1.47021 * 125.65045 * 179.97438 * 9 7 2 31 31 H 0.97004 * 120.00094 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.36355 * 274.74417 * 10 9 7 33 33 H 1.08998 * 110.36518 * 37.06312 * 10 9 7 34 34 H 1.09000 * 111.19053 * 279.18851 * 11 10 9 35 35 H 1.08997 * 110.93872 * 155.28993 * 11 10 9 36 36 H 1.09003 * 109.47481 * 300.06741 * 14 12 11 37 37 H 1.09000 * 109.47545 * 60.06364 * 14 12 11 38 38 H 1.09001 * 109.46871 * 300.00019 * 15 14 12 39 39 H 1.09005 * 109.46695 * 59.99913 * 15 14 12 40 40 H 0.96999 * 119.99707 * 359.97438 * 16 15 14 41 41 H 1.09003 * 109.69921 * 288.02021 * 21 19 17 42 42 H 1.09001 * 109.70464 * 48.57772 * 21 19 17 43 43 H 1.08999 * 109.67788 * 54.98779 * 22 21 19 44 44 H 1.08998 * 109.67906 * 175.53202 * 22 21 19 45 45 H 1.08005 * 119.89188 * 359.75475 * 25 24 23 46 46 H 1.07998 * 120.03442 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.00828 * 180.02562 * 27 26 25 48 48 H 1.07996 * 119.84583 * 179.97438 * 28 27 26 49 49 H 1.08998 * 109.88596 * 300.44309 * 30 9 7 50 50 H 1.08999 * 109.88084 * 61.45779 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 0.0047 10 6 -0.1415 -2.5331 0.0174 11 6 -0.4046 -3.9335 -0.5958 12 6 0.7782 -4.7524 -0.0147 13 1 0.5504 -5.0960 0.9944 14 6 1.1204 -5.9353 -0.9227 15 6 2.2879 -6.7196 -0.3204 16 7 2.6152 -7.8526 -1.1896 17 6 3.6179 -8.6894 -0.8569 18 8 4.3087 -8.4534 0.1116 19 6 3.8807 -9.9185 -1.6885 20 1 3.5022 -9.7610 -2.6984 21 6 5.3874 -10.1830 -1.7446 22 6 5.6088 -11.5808 -2.3368 23 8 5.0590 -12.5437 -1.4368 24 6 3.7963 -12.3379 -0.9800 25 6 3.1149 -13.4072 -0.4069 26 6 1.8348 -13.2371 0.0744 27 6 1.2229 -12.0001 -0.0137 28 6 1.8947 -10.9368 -0.5842 29 6 3.1814 -11.1021 -1.0694 30 6 1.9317 -3.7275 0.0042 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5184 -2.4870 1.0392 33 1 -0.6046 -1.7586 -0.5939 34 1 -0.3601 -3.9016 -1.6844 35 1 -1.3604 -4.3336 -0.2575 36 1 0.2517 -6.5876 -1.0127 37 1 1.4016 -5.5667 -1.9092 38 1 3.1564 -6.0669 -0.2311 39 1 2.0074 -7.0882 0.6663 40 1 2.1098 -8.0009 -2.0041 41 1 5.8684 -9.4359 -2.3760 42 1 5.8060 -10.1388 -0.7392 43 1 5.1089 -11.6536 -3.3027 44 1 6.6764 -11.7620 -2.4610 45 1 3.5912 -14.3740 -0.3376 46 1 1.3094 -14.0694 0.5189 47 1 0.2199 -11.8656 0.3636 48 1 1.4145 -9.9719 -0.6523 49 1 2.5537 -3.8527 -0.8821 50 1 2.5349 -3.8617 0.9022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753336901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:06 Heat of formation + Delta-G solvation = -55.357724 kcal Electronic energy + Delta-G solvation = -29608.216059 eV Core-core repulsion = 25599.706178 eV Total energy + Delta-G solvation = -4008.509882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.10838 -40.46190 -39.40462 -38.46294 -36.53795 -35.33236 -34.74070 -32.50232 -31.62275 -31.20243 -30.71819 -28.50556 -27.33994 -26.32021 -24.77558 -23.90541 -23.36475 -22.12880 -21.82018 -21.02045 -20.52824 -19.01095 -18.90636 -18.08061 -17.73395 -17.16497 -17.06884 -16.89620 -16.57596 -16.02923 -15.93222 -15.58632 -15.19895 -15.09784 -14.82830 -14.64295 -14.29272 -14.24705 -14.21238 -13.79954 -13.52486 -13.41872 -13.32672 -13.12105 -12.93442 -12.82992 -12.72729 -12.50248 -12.23975 -12.06565 -11.98622 -11.85631 -11.78288 -11.65348 -11.56260 -11.44683 -11.25635 -10.90710 -10.76323 -10.14482 -9.81044 -9.15600 -8.88826 -7.78733 -5.23403 0.27561 0.43352 1.44306 1.45309 1.50346 1.55834 2.06524 2.36007 2.47952 2.77945 3.29800 3.41197 3.55916 3.66747 3.72918 3.75086 3.84212 3.93801 4.08962 4.12364 4.17153 4.20520 4.30360 4.35145 4.38165 4.49871 4.51221 4.53139 4.62629 4.64685 4.71709 4.73338 4.87841 4.89139 4.99544 5.03168 5.06850 5.11750 5.18416 5.25906 5.29785 5.39983 5.42796 5.43209 5.51248 5.56742 5.68758 5.83050 5.83141 6.32016 6.44342 6.49069 7.10691 7.17581 7.78586 8.42133 9.22689 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.001930 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.690226 B =14507.790005 C =15453.963499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.630 5.630 10 C 0.147 3.853 11 C -0.120 4.120 12 C -0.084 4.084 13 H 0.077 0.923 14 C -0.099 4.099 15 C 0.123 3.877 16 N -0.712 5.712 17 C 0.522 3.478 18 O -0.581 6.581 19 C -0.057 4.057 20 H 0.134 0.866 21 C -0.148 4.148 22 C 0.063 3.937 23 O -0.331 6.331 24 C 0.123 3.877 25 C -0.163 4.163 26 C -0.083 4.083 27 C -0.157 4.157 28 C -0.095 4.095 29 C -0.165 4.165 30 C 0.134 3.866 31 H 0.247 0.753 32 H -0.018 1.018 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.418 0.582 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.133 0.867 45 H 0.142 0.858 46 H 0.156 0.844 47 H 0.144 0.856 48 H 0.131 0.869 49 H 0.026 0.974 50 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -30.372 -8.211 31.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.356 5.356 10 C 0.022 3.978 11 C -0.159 4.159 12 C -0.104 4.104 13 H 0.096 0.904 14 C -0.137 4.137 15 C -0.001 4.001 16 N -0.364 5.364 17 C 0.309 3.691 18 O -0.461 6.461 19 C -0.078 4.078 20 H 0.151 0.849 21 C -0.186 4.186 22 C -0.011 4.011 23 O -0.246 6.246 24 C 0.078 3.922 25 C -0.181 4.181 26 C -0.101 4.101 27 C -0.175 4.175 28 C -0.114 4.114 29 C -0.167 4.167 30 C 0.009 3.991 31 H 0.057 0.943 32 H 0.000 1.000 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.256 0.744 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.151 0.849 45 H 0.160 0.840 46 H 0.173 0.827 47 H 0.162 0.838 48 H 0.149 0.851 49 H 0.044 0.956 50 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 3.782 -30.136 -7.481 31.280 hybrid contribution 0.263 1.688 0.161 1.716 sum 4.044 -28.448 -7.320 29.651 Atomic orbital electron populations 1.70058 1.06126 1.24932 1.58700 1.25640 0.96720 1.00971 1.02802 0.84982 0.77967 0.79326 0.76893 1.19382 1.21418 1.21899 1.19482 0.90895 0.84086 1.42421 0.90642 1.44889 1.03028 1.00994 1.86652 1.21840 0.83894 0.95740 0.96319 1.22903 0.97858 0.94998 1.00118 1.22008 0.94713 0.93870 0.99770 0.90439 1.21625 0.97827 0.95475 0.98741 1.21301 0.97888 0.87121 0.93818 1.45994 1.35104 1.27975 1.27355 1.20722 0.79415 0.84146 0.84831 1.90708 1.49134 1.75536 1.30682 1.20197 0.97614 0.89613 1.00408 0.84881 1.22178 0.93615 0.99471 1.03376 1.23236 1.01245 0.85222 0.91445 1.85965 1.26577 1.50338 1.61701 1.18887 0.84333 0.93066 0.95914 1.20863 0.95610 0.98207 1.03434 1.21283 0.93673 0.98263 0.96860 1.21353 1.01571 0.93005 1.01562 1.21212 0.93241 1.00055 0.96844 1.19462 0.96622 0.93191 1.07407 1.21568 0.95312 0.85118 0.97136 0.94295 0.99964 0.90926 0.91266 0.89527 0.88091 0.90581 0.93452 0.92151 0.74434 0.87556 0.91899 0.89461 0.84936 0.84005 0.82665 0.83777 0.85109 0.95615 0.97377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.39 10.08 21.65 0.22 -57.17 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.98 46.66 29.55 68.60 2.03 48.68 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 7 C -0.24 -13.91 10.27 84.03 0.86 -13.05 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -33.40 3.39 -691.55 -2.35 -35.75 16 10 C 0.15 7.30 5.91 86.93 0.51 7.82 16 11 C -0.12 -4.17 6.55 32.06 0.21 -3.96 16 12 C -0.08 -2.63 2.97 -9.61 -0.03 -2.66 16 13 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 14 C -0.10 -2.10 4.73 30.59 0.14 -1.96 16 15 C 0.12 2.85 5.53 86.38 0.48 3.33 16 16 N -0.71 -12.94 4.83 -463.05 -2.24 -15.17 16 17 C 0.52 11.95 5.79 87.66 0.51 12.46 16 18 O -0.58 -19.42 16.07 -3.04 -0.05 -19.47 16 19 C -0.06 -0.95 2.72 -12.24 -0.03 -0.98 16 20 H 0.13 1.27 8.08 -2.39 -0.02 1.25 16 21 C -0.15 -2.35 5.35 30.76 0.16 -2.19 16 22 C 0.06 0.75 7.03 72.12 0.51 1.26 16 23 O -0.33 -6.19 10.27 -91.85 -0.94 -7.14 16 24 C 0.12 2.41 6.47 22.51 0.15 2.55 16 25 C -0.16 -2.71 9.93 22.39 0.22 -2.49 16 26 C -0.08 -1.15 10.03 22.18 0.22 -0.93 16 27 C -0.16 -2.35 10.04 22.25 0.22 -2.12 16 28 C -0.10 -1.66 9.10 22.30 0.20 -1.45 16 29 C -0.17 -3.11 5.42 -19.76 -0.11 -3.22 16 30 C 0.13 5.60 5.98 86.73 0.52 6.12 16 31 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 32 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 33 H 0.07 4.11 5.85 -2.39 -0.01 4.09 16 34 H 0.07 2.29 8.05 -2.39 -0.02 2.27 16 35 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.61 8.06 -2.39 -0.02 1.59 16 38 H 0.05 1.38 7.49 -2.39 -0.02 1.36 16 39 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.42 4.53 8.43 -92.71 -0.78 3.75 16 41 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.43 7.46 -2.39 -0.02 1.41 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 46 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 47 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 48 H 0.13 2.01 6.79 -2.91 -0.02 1.99 16 49 H 0.03 1.06 7.76 -2.39 -0.02 1.04 16 50 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -79.09 396.40 2.05 -77.05 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.15 Total: 13.98 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.22 Total: -5.01 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -4.37 Total: -108.09 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.99 Total: -26.61 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -79.09 2.05 -77.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753336901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.691 kcal (2) G-P(sol) polarization free energy of solvation -79.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds