Wall clock time and date at job start Wed Apr 1 2020 03:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99664 * 2 1 4 4 H 1.48500 * 109.46884 * 270.00068 * 3 2 1 5 5 H 1.48499 * 109.47126 * 29.99853 * 3 2 1 6 6 H 1.48499 * 109.47207 * 150.00066 * 3 2 1 7 7 C 1.38811 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99384 * 336.77225 * 7 2 1 9 9 N 1.36928 * 119.99971 * 156.77308 * 7 2 1 10 10 C 1.47425 * 125.65178 * 344.04811 * 9 7 2 11 11 C 1.54909 * 104.83321 * 204.09302 * 10 9 7 12 12 C 1.55158 * 101.58224 * 322.99030 * 11 10 9 13 13 O 1.42901 * 110.71910 * 276.96052 * 12 11 10 14 14 C 1.52998 * 110.72104 * 153.86653 * 12 11 10 15 15 N 1.46500 * 109.47207 * 184.99812 * 14 12 11 16 16 C 1.34779 * 120.00209 * 179.97438 * 15 14 12 17 17 O 1.21271 * 119.99775 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99907 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.47256 * 180.02562 * 18 16 15 20 20 C 1.30993 * 120.00323 * 124.99533 * 19 18 16 21 21 C 1.50702 * 119.99814 * 179.97438 * 20 19 18 22 22 C 1.50700 * 109.46719 * 125.00516 * 21 20 19 23 23 C 1.38239 * 119.99868 * 269.72408 * 22 21 20 24 24 C 1.38233 * 120.00207 * 179.76775 * 23 22 21 25 25 C 1.38240 * 119.99880 * 0.48863 * 24 23 22 26 26 C 1.38237 * 119.99905 * 359.78484 * 25 24 23 27 27 C 1.38230 * 120.00734 * 90.00142 * 22 21 20 28 28 C 1.47028 * 125.64853 * 163.74016 * 9 7 2 29 29 H 0.97000 * 119.99344 * 184.52792 * 1 2 3 30 30 H 1.09003 * 110.36603 * 322.92947 * 10 9 7 31 31 H 1.08998 * 110.36650 * 85.25727 * 10 9 7 32 32 H 1.08999 * 111.00764 * 81.06161 * 11 10 9 33 33 H 1.09003 * 111.00473 * 204.91838 * 11 10 9 34 34 H 0.96697 * 114.00452 * 179.97438 * 13 12 11 35 35 H 1.08993 * 109.47467 * 304.99638 * 14 12 11 36 36 H 1.08998 * 109.46995 * 65.00102 * 14 12 11 37 37 H 0.97001 * 119.99785 * 359.97438 * 15 14 12 38 38 H 1.09007 * 109.47178 * 299.99668 * 18 16 15 39 39 H 1.08999 * 109.47426 * 59.99630 * 18 16 15 40 40 H 1.08002 * 119.99444 * 305.00004 * 19 18 16 41 41 H 1.08002 * 120.00233 * 0.02562 * 20 19 18 42 42 H 1.08994 * 109.47351 * 245.00249 * 21 20 19 43 43 H 1.08999 * 109.47666 * 5.00680 * 21 20 19 44 44 H 1.08002 * 119.99985 * 0.02562 * 23 22 21 45 45 H 1.08002 * 120.00198 * 180.25506 * 24 23 22 46 46 H 1.07997 * 120.00003 * 179.77088 * 25 24 23 47 47 H 1.07999 * 120.00138 * 179.97438 * 26 25 24 48 48 H 1.08011 * 119.99293 * 359.97438 * 27 22 21 49 49 H 1.09008 * 109.87992 * 298.39647 * 28 9 7 50 50 H 1.09003 * 109.88073 * 59.55324 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.5360 -2.0993 0.3698 9 7 3.2965 -1.2502 -0.4671 10 6 3.9505 -0.2171 -1.2907 11 6 5.0767 -0.9663 -2.0459 12 6 5.5588 -1.9725 -0.9677 13 8 6.4893 -1.3527 -0.0777 14 6 6.1789 -3.2095 -1.6205 15 7 6.5151 -4.1909 -0.5861 16 6 7.0764 -5.3671 -0.9299 17 8 7.3035 -5.6127 -2.0955 18 6 7.4217 -6.3768 0.1343 19 6 8.0326 -7.5952 -0.5086 20 6 9.2075 -8.0226 -0.1175 21 6 9.8180 -9.2414 -0.7601 22 6 11.1864 -8.8977 -1.2897 23 6 11.3303 -8.4346 -2.5842 24 6 12.5849 -8.1147 -3.0685 25 6 13.6969 -8.2675 -2.2615 26 6 13.5537 -8.7359 -0.9688 27 6 12.2984 -9.0508 -0.4830 28 6 4.2559 -2.3379 -0.2257 29 1 -0.4849 -0.8375 0.0663 30 1 3.2396 0.2109 -1.9974 31 1 4.3726 0.5625 -0.6566 32 1 4.6825 -1.4875 -2.9182 33 1 5.8780 -0.2838 -2.3294 34 1 6.8210 -1.9394 0.6156 35 1 5.4661 -3.6477 -2.3190 36 1 7.0835 -2.9225 -2.1567 37 1 6.3338 -3.9942 0.3463 38 1 8.1348 -5.9390 0.8329 39 1 6.5170 -6.6634 0.6704 40 1 7.5018 -8.1159 -1.2919 41 1 9.7382 -7.5021 0.6660 42 1 9.9041 -10.0375 -0.0206 43 1 9.1840 -9.5754 -1.5814 44 1 10.4620 -8.3187 -3.2159 45 1 12.6968 -7.7490 -4.0785 46 1 14.6775 -8.0211 -2.6410 47 1 14.4224 -8.8557 -0.3385 48 1 12.1864 -9.4165 0.5272 49 1 4.4492 -2.4312 0.8430 50 1 3.8595 -3.2753 -0.6160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754754213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:17 Heat of formation + Delta-G solvation = -26.256226 kcal Electronic energy + Delta-G solvation = -28786.480651 eV Core-core repulsion = 24779.232705 eV Total energy + Delta-G solvation = -4007.247946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.11276 -39.59545 -38.74393 -35.96635 -35.41290 -34.27024 -32.76491 -32.33550 -31.18877 -30.21172 -29.35615 -28.38547 -26.24251 -25.08380 -23.12060 -22.88425 -21.64206 -21.13231 -20.45319 -20.03184 -19.79611 -17.72155 -17.48090 -17.10616 -16.48539 -15.99312 -15.79638 -15.48453 -15.44448 -15.03496 -14.71320 -14.37847 -14.06402 -13.93230 -13.83354 -13.71701 -13.50905 -13.46463 -13.04905 -13.03939 -12.81188 -12.36438 -12.21047 -12.02320 -11.92365 -11.59897 -11.38463 -11.30996 -11.25103 -11.16720 -11.09585 -10.76034 -10.18581 -9.98320 -9.80460 -9.57712 -9.34310 -9.23817 -9.22557 -9.18052 -8.98772 -8.54272 -7.10142 -6.34292 -3.26253 1.02151 1.09753 1.89875 2.52597 3.09111 3.42800 3.47876 3.54516 3.68838 4.23936 4.40154 4.49852 4.54350 4.55132 4.58465 4.68503 4.71038 4.81401 4.88265 4.95907 4.99830 5.07678 5.10432 5.16586 5.20466 5.21882 5.35892 5.42392 5.44420 5.51677 5.62357 5.72705 5.74093 5.76054 5.85133 6.04407 6.14678 6.15579 6.21379 6.23774 6.28236 6.35010 6.36179 6.37496 6.49623 6.59176 6.70658 6.74449 7.31096 7.68167 7.72376 8.08549 8.31307 9.00084 9.54743 10.22520 11.12849 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024931 B = 0.001723 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.851869 B =16248.673636 C =16737.297873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.017 4.017 3 Si 1.064 2.936 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.284 1.284 7 C -0.330 4.330 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.109 3.891 11 C -0.114 4.114 12 C 0.104 3.896 13 O -0.544 6.544 14 C 0.105 3.895 15 N -0.730 5.730 16 C 0.516 3.484 17 O -0.537 6.537 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.152 4.152 21 C -0.051 4.051 22 C -0.076 4.076 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.119 4.119 28 C 0.115 3.885 29 H 0.262 0.738 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.367 0.633 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.030 0.970 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.516 -18.338 -0.492 31.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.896 3.104 4 H -0.220 1.220 5 H -0.226 1.226 6 H -0.211 1.211 7 C -0.457 4.457 8 H 0.091 0.909 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.153 4.153 12 C 0.063 3.937 13 O -0.349 6.349 14 C -0.019 4.019 15 N -0.383 5.383 16 C 0.303 3.697 17 O -0.414 6.414 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.170 4.170 21 C -0.088 4.088 22 C -0.076 4.076 23 C -0.129 4.129 24 C -0.136 4.136 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.011 4.011 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.214 0.786 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.233 0.767 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.047 0.953 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 25.251 -16.360 -1.750 30.138 hybrid contribution 0.207 -1.988 0.993 2.231 sum 25.457 -18.348 -0.757 31.390 Atomic orbital electron populations 1.70923 1.05812 1.29819 1.49461 1.25950 0.96412 1.00958 0.98496 0.83846 0.74333 0.75825 0.76443 1.22044 1.22644 1.21116 1.20012 0.86373 0.96341 1.42978 0.90893 1.44705 1.10235 1.19293 1.58881 1.22025 0.93290 0.92783 0.93520 1.22740 0.98752 0.97627 0.96144 1.22538 0.88511 0.91436 0.91220 1.86614 1.62204 1.41565 1.44472 1.22021 1.00865 0.88112 0.90927 1.46013 1.63677 1.17630 1.10963 1.20551 0.76876 0.82111 0.90192 1.90705 1.52976 1.77692 1.19984 1.20773 1.03159 0.93910 0.97466 1.22404 0.96677 0.96031 0.99572 1.22649 0.95706 0.98207 1.00468 1.19680 0.92775 0.96219 1.00111 1.19802 0.94792 0.98959 0.94074 1.21128 0.97595 0.98740 0.95475 1.21183 0.92711 0.99773 0.99948 1.21160 0.98705 1.00128 0.94460 1.21136 0.97301 0.99535 0.95925 1.21053 0.92273 1.00797 0.99566 1.21971 0.88924 0.93345 0.96903 0.92735 0.92061 0.94491 0.89697 0.90245 0.78615 0.90218 0.90644 0.76653 0.88467 0.87711 0.86564 0.87263 0.90079 0.90395 0.85933 0.86079 0.86242 0.86182 0.86133 0.95257 0.94641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.72 13.70 55.49 0.76 -27.96 16 2 C -0.02 -0.51 5.43 -17.43 -0.09 -0.60 16 3 Si 1.06 26.87 24.70 -169.99 -4.20 22.67 16 4 H -0.29 -6.98 6.70 56.52 0.38 -6.60 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.28 -6.94 6.25 56.52 0.35 -6.59 16 7 C -0.33 -9.40 10.44 -15.06 -0.16 -9.56 16 8 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 9 N -0.60 -14.66 3.23 -170.06 -0.55 -15.21 16 10 C 0.11 2.38 4.70 -2.53 -0.01 2.37 16 11 C -0.11 -1.93 6.26 -24.58 -0.15 -2.08 16 12 C 0.10 1.62 0.93 -88.78 -0.08 1.54 16 13 O -0.54 -8.14 13.10 -35.23 -0.46 -8.60 16 14 C 0.10 1.40 4.74 -4.04 -0.02 1.38 16 15 N -0.73 -8.02 5.13 -60.30 -0.31 -8.33 16 16 C 0.52 6.09 7.82 -10.98 -0.09 6.00 16 17 O -0.54 -8.48 16.03 5.56 0.09 -8.39 16 18 C -0.11 -0.91 6.14 -29.03 -0.18 -1.09 16 19 C -0.13 -1.13 8.36 -36.02 -0.30 -1.43 16 20 C -0.15 -1.20 9.10 -36.02 -0.33 -1.52 16 21 C -0.05 -0.37 5.79 -29.03 -0.17 -0.53 16 22 C -0.08 -0.64 5.12 -104.62 -0.54 -1.18 16 23 C -0.11 -1.01 9.70 -39.58 -0.38 -1.39 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 25 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 27 C -0.12 -0.91 9.70 -39.59 -0.38 -1.29 16 28 C 0.12 2.19 6.04 -3.06 -0.02 2.17 16 29 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 30 H 0.06 1.41 6.52 -51.93 -0.34 1.07 16 31 H 0.04 0.85 5.46 -51.93 -0.28 0.57 16 32 H 0.08 1.33 8.04 -51.93 -0.42 0.92 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.37 3.94 8.05 45.56 0.37 4.30 16 35 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 3.46 7.38 -40.82 -0.30 3.16 16 38 H 0.10 0.60 7.79 -51.93 -0.40 0.19 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.12 1.11 7.84 -52.49 -0.41 0.70 16 41 H 0.11 0.78 7.84 -52.49 -0.41 0.37 16 42 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 43 H 0.08 0.55 7.73 -51.93 -0.40 0.15 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 48 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 49 H 0.03 0.55 8.07 -51.92 -0.42 0.13 16 50 H 0.04 0.68 7.82 -51.93 -0.41 0.27 16 LS Contribution 406.62 15.07 6.13 6.13 Total: -1.00 -35.89 406.62 -9.94 -45.82 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.30 Total: 5.14 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -4.10 Total: -11.27 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.10 Total: -51.50 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.37 Total: -17.00 kcal Atomic # 14 Polarization: 26.87 SS G_CDS: -4.20 Total: 22.67 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.89 -9.94 -45.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754754213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.569 kcal (2) G-P(sol) polarization free energy of solvation -35.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds