Wall clock time and date at job start Wed Apr 1 2020 02:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48505 * 109.47183 * 269.99907 * 3 2 1 5 5 H 1.48495 * 109.47483 * 29.99821 * 3 2 1 6 6 H 1.48501 * 109.46883 * 150.00097 * 3 2 1 7 7 C 1.38808 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99512 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00470 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00345 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47400 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47210 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.88663 * 51.12908 * 12 11 10 14 14 C 1.55152 * 111.04114 * 287.21462 * 12 11 10 15 15 C 1.54311 * 102.86556 * 206.21368 * 14 12 11 16 16 N 1.47024 * 107.27533 * 22.53190 * 15 14 12 17 17 C 1.34776 * 125.64831 * 180.96924 * 16 15 14 18 18 O 1.21282 * 119.99867 * 184.88330 * 17 16 15 19 19 C 1.50700 * 119.99778 * 4.87555 * 17 16 15 20 20 H 1.08999 * 109.40181 * 24.30194 * 19 17 16 21 21 C 1.53074 * 109.43773 * 264.40168 * 19 17 16 22 22 C 1.53400 * 108.30095 * 191.74355 * 21 19 17 23 23 O 1.42827 * 108.37797 * 64.71919 * 22 21 19 24 24 C 1.35847 * 117.85729 * 310.81017 * 23 22 21 25 25 C 1.39145 * 118.50099 * 197.31685 * 24 23 22 26 26 C 1.37970 * 120.21332 * 180.56807 * 25 24 23 27 27 C 1.38293 * 119.95729 * 359.45577 * 26 25 24 28 28 C 1.38101 * 119.98265 * 0.18724 * 27 26 25 29 29 C 1.38370 * 121.80258 * 17.22424 * 24 23 22 30 30 C 1.47428 * 108.70189 * 0.69782 * 16 15 14 31 31 H 0.97002 * 119.99576 * 0.02562 * 1 2 3 32 32 H 0.97010 * 119.99451 * 0.02562 * 9 7 2 33 33 H 1.09007 * 109.47036 * 60.00147 * 10 9 7 34 34 H 1.08993 * 109.47329 * 300.00145 * 10 9 7 35 35 H 1.09007 * 109.46792 * 60.00137 * 11 10 9 36 36 H 1.09006 * 109.47344 * 300.00627 * 11 10 9 37 37 H 1.09006 * 110.72079 * 324.77799 * 14 12 11 38 38 H 1.09002 * 110.71751 * 88.04209 * 14 12 11 39 39 H 1.08988 * 109.98821 * 263.04762 * 15 14 12 40 40 H 1.09006 * 109.77170 * 141.88838 * 15 14 12 41 41 H 1.09003 * 109.69898 * 311.45048 * 21 19 17 42 42 H 1.09002 * 109.69303 * 72.00363 * 21 19 17 43 43 H 1.09005 * 109.68279 * 184.43972 * 22 21 19 44 44 H 1.09000 * 109.68830 * 304.99619 * 22 21 19 45 45 H 1.07997 * 119.89146 * 0.32736 * 25 24 23 46 46 H 1.08000 * 120.02096 * 179.74458 * 26 25 24 47 47 H 1.07996 * 120.00798 * 180.15834 * 27 26 25 48 48 H 1.08000 * 119.84418 * 180.02562 * 28 27 26 49 49 H 1.09001 * 110.36190 * 94.94013 * 30 16 15 50 50 H 1.08993 * 110.36760 * 217.15312 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8290 -6.1447 0.0005 13 1 2.5773 -6.1617 0.7929 14 6 2.4776 -6.4127 -1.3832 15 6 2.5774 -7.9520 -1.4234 16 7 1.5803 -8.4791 -0.4803 17 6 1.3653 -9.7821 -0.2112 18 8 0.4545 -10.1080 0.5203 19 6 2.2566 -10.8341 -0.8195 20 1 3.2220 -10.3922 -1.0662 21 6 1.6054 -11.3792 -2.0931 22 6 2.3715 -12.6357 -2.5259 23 8 2.2013 -13.6356 -1.5204 24 6 2.4232 -13.2805 -0.2280 25 6 2.6235 -14.2866 0.7120 26 6 2.8402 -13.9662 2.0364 27 6 2.8699 -12.6409 2.4304 28 6 2.6788 -11.6395 1.4987 29 6 2.4558 -11.9553 0.1687 30 6 0.8590 -7.3459 0.1272 31 1 -0.4849 0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0002 33 1 2.6848 -3.7144 0.8906 34 1 2.6848 -3.7145 -0.8894 35 1 0.4369 -4.7621 -0.8887 36 1 0.4375 -4.7617 0.8914 37 1 1.8401 -6.0427 -2.1862 38 1 3.4689 -5.9627 -1.4380 39 1 3.5760 -8.2686 -1.1225 40 1 2.3607 -8.3094 -2.4302 41 1 0.5645 -11.6339 -1.8934 42 1 1.6550 -10.6280 -2.8814 43 1 1.9759 -12.9982 -3.4748 44 1 3.4303 -12.4010 -2.6348 45 1 2.6054 -15.3217 0.4046 46 1 2.9912 -14.7498 2.7642 47 1 3.0420 -12.3891 3.4664 48 1 2.7028 -10.6053 1.8088 49 1 -0.0638 -7.1475 -0.4180 50 1 0.6426 -7.5520 1.1754 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754936100.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:08 Heat of formation + Delta-G solvation = -62.863602 kcal Electronic energy + Delta-G solvation = -29598.674470 eV Core-core repulsion = 25589.839110 eV Total energy + Delta-G solvation = -4008.835361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.17810 -40.79300 -38.95930 -38.43343 -36.83865 -35.40742 -34.46586 -32.59374 -31.63592 -31.22118 -30.61954 -29.20316 -27.33290 -25.63324 -24.82560 -24.13609 -23.51136 -23.06015 -21.40285 -21.20723 -20.13689 -19.13623 -18.89471 -18.37375 -17.68933 -17.29382 -16.79357 -16.70336 -16.40425 -15.92186 -15.83362 -15.41117 -15.25173 -15.15054 -15.03998 -14.78633 -14.50696 -14.31555 -14.16340 -13.98771 -13.89054 -13.50334 -13.23398 -13.09800 -12.93740 -12.87591 -12.74368 -12.54603 -12.35792 -12.18987 -12.16545 -11.96846 -11.81361 -11.67104 -11.60306 -11.56251 -11.51370 -10.91451 -10.88549 -9.83050 -9.71938 -9.16948 -8.99483 -7.95219 -5.24253 0.28427 0.43240 1.43746 1.47710 1.49621 1.58108 1.84469 2.34364 2.56395 2.75508 3.24653 3.38663 3.44924 3.55342 3.60052 3.67387 3.74501 3.81613 4.03427 4.09153 4.17016 4.17928 4.26933 4.32728 4.36255 4.45536 4.46618 4.49442 4.51587 4.59412 4.59857 4.63553 4.77428 4.81358 4.85668 4.88738 4.92957 4.96577 5.01739 5.09245 5.21181 5.27538 5.30122 5.38845 5.43840 5.45681 5.50295 5.55709 5.81073 6.27490 6.41310 6.45024 7.02184 7.33189 8.10750 8.32248 9.28500 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.001777 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.565587 B =15756.738901 C =16200.424159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.102 4.102 12 C -0.084 4.084 13 H 0.089 0.911 14 C -0.123 4.123 15 C 0.096 3.904 16 N -0.616 5.616 17 C 0.534 3.466 18 O -0.579 6.579 19 C -0.055 4.055 20 H 0.128 0.872 21 C -0.146 4.146 22 C 0.061 3.939 23 O -0.330 6.330 24 C 0.125 3.875 25 C -0.163 4.163 26 C -0.082 4.082 27 C -0.162 4.162 28 C -0.084 4.084 29 C -0.160 4.160 30 C 0.111 3.889 31 H 0.251 0.749 32 H 0.372 0.628 33 H 0.017 0.983 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.138 0.862 44 H 0.087 0.913 45 H 0.146 0.854 46 H 0.157 0.843 47 H 0.139 0.861 48 H 0.108 0.892 49 H 0.065 0.935 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.162 -31.352 -5.099 33.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.141 4.141 12 C -0.104 4.104 13 H 0.107 0.893 14 C -0.161 4.161 15 C -0.025 4.025 16 N -0.349 5.349 17 C 0.323 3.677 18 O -0.458 6.458 19 C -0.076 4.076 20 H 0.145 0.855 21 C -0.184 4.184 22 C -0.013 4.013 23 O -0.244 6.244 24 C 0.080 3.920 25 C -0.181 4.181 26 C -0.100 4.100 27 C -0.180 4.180 28 C -0.102 4.102 29 C -0.161 4.161 30 C -0.012 4.012 31 H 0.060 0.940 32 H 0.204 0.796 33 H 0.035 0.965 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.105 0.895 45 H 0.163 0.837 46 H 0.175 0.825 47 H 0.157 0.843 48 H 0.126 0.874 49 H 0.083 0.917 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.791 -31.689 -4.792 33.511 hybrid contribution -0.540 1.676 0.374 1.800 sum 9.251 -30.013 -4.418 31.716 Atomic orbital electron populations 1.69828 1.06686 1.26069 1.59619 1.25623 0.96448 1.01301 1.03811 0.85112 0.77678 0.79300 0.77507 1.21222 1.22344 1.19325 1.19666 0.91593 0.85378 1.41037 0.90430 1.42651 1.05705 1.01527 1.89466 1.20797 0.94055 0.84439 0.97906 1.21499 0.97851 0.92795 1.01935 1.22164 0.97059 0.91804 0.99342 0.89312 1.22753 1.03039 0.93980 0.96343 1.22368 0.92320 0.94313 0.93500 1.48639 1.38301 1.04572 1.43354 1.20431 0.84555 0.82137 0.80533 1.90714 1.33930 1.81356 1.39822 1.20203 1.00194 0.92021 0.95158 0.85480 1.22206 0.99868 1.00053 0.96223 1.23273 1.01434 0.86308 0.90257 1.85975 1.84854 1.40342 1.13239 1.18826 0.96424 0.92033 0.84752 1.20902 1.05347 0.99226 0.92635 1.21287 0.96584 0.96860 0.95281 1.21289 1.03359 0.93069 1.00259 1.20952 0.97260 0.99539 0.92429 1.19445 1.08287 0.92930 0.95477 1.22226 0.95539 0.85156 0.98295 0.94046 0.79611 0.96510 0.95110 0.91754 0.92673 0.90174 0.88334 0.89062 0.88836 0.92105 0.86334 0.84420 0.89460 0.83654 0.82538 0.84326 0.87356 0.91675 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.73 13.06 21.65 0.28 -59.45 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.75 -37.96 5.60 -343.47 -1.92 -39.88 16 10 C 0.15 5.79 6.16 86.38 0.53 6.32 16 11 C -0.10 -3.02 4.84 30.59 0.15 -2.87 16 12 C -0.08 -1.84 3.00 -9.40 -0.03 -1.87 16 13 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 14 C -0.12 -2.02 5.91 31.78 0.19 -1.83 16 15 C 0.10 1.24 6.19 86.72 0.54 1.77 16 16 N -0.62 -12.50 3.33 -811.82 -2.70 -15.20 16 17 C 0.53 12.70 5.79 87.66 0.51 13.21 16 18 O -0.58 -19.34 16.15 -3.03 -0.05 -19.39 16 19 C -0.05 -0.94 2.36 -12.24 -0.03 -0.97 16 20 H 0.13 1.45 6.87 -2.39 -0.02 1.44 16 21 C -0.15 -1.90 5.49 30.75 0.17 -1.73 16 22 C 0.06 0.63 7.03 72.12 0.51 1.13 16 23 O -0.33 -5.95 10.27 -91.84 -0.94 -6.89 16 24 C 0.12 2.55 6.47 22.52 0.15 2.69 16 25 C -0.16 -2.89 9.94 22.42 0.22 -2.67 16 26 C -0.08 -1.31 10.04 22.22 0.22 -1.08 16 27 C -0.16 -3.00 10.04 22.25 0.22 -2.78 16 28 C -0.08 -1.85 8.59 22.30 0.19 -1.66 16 29 C -0.16 -3.39 5.11 -19.75 -0.10 -3.49 16 30 C 0.11 2.59 6.36 86.86 0.55 3.15 16 31 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.37 20.15 7.67 -92.70 -0.71 19.44 16 33 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.03 1.10 7.75 -2.39 -0.02 1.08 16 35 H 0.06 1.92 7.97 -2.38 -0.02 1.90 16 36 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 37 H 0.08 1.38 7.92 -2.38 -0.02 1.36 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 0.83 7.63 -2.39 -0.02 0.81 16 40 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 42 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.14 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 48 H 0.11 2.52 7.34 -2.91 -0.02 2.49 16 49 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 50 H 0.06 1.64 8.09 -2.39 -0.02 1.62 16 Total: -1.00 -76.65 400.90 2.21 -74.44 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.22 Total: 28.07 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.29 Total: -9.59 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -4.34 Total: -114.54 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.99 Total: -26.28 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -76.65 2.21 -74.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754936100.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.577 kcal (2) G-P(sol) polarization free energy of solvation -76.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds