Wall clock time and date at job start Wed Apr 1 2020 02:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99961 * 2 1 4 4 H 1.48503 * 109.46918 * 269.99946 * 3 2 1 5 5 H 1.48504 * 109.47092 * 29.99490 * 3 2 1 6 6 H 1.48500 * 109.47535 * 149.99767 * 3 2 1 7 7 C 1.38809 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00179 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99618 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46717 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46861 * 179.97438 * 11 10 9 13 13 H 1.08995 * 110.88652 * 302.57721 * 12 11 10 14 14 C 1.55157 * 111.00267 * 66.45757 * 12 11 10 15 15 C 1.54319 * 102.94296 * 153.61412 * 14 12 11 16 16 N 1.47023 * 107.27044 * 337.80246 * 15 14 12 17 17 C 1.34776 * 125.64743 * 178.89992 * 16 15 14 18 18 O 1.21280 * 119.99849 * 185.16164 * 17 16 15 19 19 C 1.50703 * 120.00189 * 5.17015 * 17 16 15 20 20 H 1.09000 * 109.42982 * 336.69884 * 19 17 16 21 21 C 1.53069 * 109.43849 * 96.56978 * 19 17 16 22 22 C 1.53402 * 108.30112 * 168.25780 * 21 19 17 23 23 O 1.42825 * 108.37631 * 295.28340 * 22 21 19 24 24 C 1.35839 * 117.85930 * 49.18279 * 23 22 21 25 25 C 1.39150 * 118.50198 * 162.93143 * 24 23 22 26 26 C 1.37968 * 120.21699 * 179.70962 * 25 24 23 27 27 C 1.38288 * 119.95729 * 0.02925 * 26 25 24 28 28 C 1.38103 * 119.98561 * 0.07497 * 27 26 25 29 29 C 1.38370 * 121.80760 * 342.79182 * 24 23 22 30 30 C 1.47423 * 108.70282 * 359.17078 * 16 15 14 31 31 H 0.97006 * 120.00302 * 0.02562 * 1 2 3 32 32 H 0.96993 * 119.99971 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.46983 * 60.00461 * 10 9 7 34 34 H 1.08996 * 109.47217 * 299.99737 * 10 9 7 35 35 H 1.08994 * 109.47013 * 60.00355 * 11 10 9 36 36 H 1.08996 * 109.47133 * 299.99874 * 11 10 9 37 37 H 1.08996 * 110.72364 * 35.24494 * 14 12 11 38 38 H 1.09007 * 110.86951 * 272.04431 * 14 12 11 39 39 H 1.08999 * 109.88046 * 218.38767 * 15 14 12 40 40 H 1.08998 * 110.01576 * 97.29647 * 15 14 12 41 41 H 1.09004 * 109.70093 * 287.96001 * 21 19 17 42 42 H 1.09003 * 109.70040 * 48.55266 * 21 19 17 43 43 H 1.08999 * 109.68580 * 55.00817 * 22 21 19 44 44 H 1.09000 * 109.68494 * 175.56448 * 22 21 19 45 45 H 1.08006 * 119.88953 * 359.73536 * 25 24 23 46 46 H 1.07994 * 120.01945 * 180.02562 * 26 25 24 47 47 H 1.08003 * 120.00827 * 180.09806 * 27 26 25 48 48 H 1.07998 * 119.84236 * 180.21659 * 28 27 26 49 49 H 1.09005 * 110.36989 * 142.73323 * 30 16 15 50 50 H 1.08999 * 110.36711 * 265.05927 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.8289 -6.1447 0.0005 13 1 2.4974 -6.2070 -0.8581 14 6 2.6090 -6.3371 1.3279 15 6 2.7139 -7.8720 1.4478 16 7 1.6354 -8.4483 0.6315 17 6 1.3998 -9.7638 0.4569 18 8 0.5378 -10.1282 -0.3145 19 6 2.2072 -10.7818 1.2202 20 1 3.1574 -10.3400 1.5203 21 6 1.4322 -11.2160 2.4667 22 6 2.1255 -12.4491 3.0599 23 8 2.0208 -13.5199 2.1205 24 6 2.3652 -13.2689 0.8308 25 6 2.6184 -14.3476 -0.0110 26 6 2.9651 -14.1335 -1.3291 27 6 3.0624 -12.8430 -1.8166 28 6 2.8140 -11.7699 -0.9836 29 6 2.4659 -11.9788 0.3407 30 6 0.8585 -7.3491 0.0304 31 1 -0.4851 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6847 -3.7144 0.8906 34 1 2.6847 -3.7144 -0.8894 35 1 0.4369 -4.7622 -0.8886 36 1 0.4376 -4.7618 0.8914 37 1 2.0508 -5.9219 2.1670 38 1 3.5996 -5.8866 1.2649 39 1 2.5916 -8.1717 2.4886 40 1 3.6812 -8.2100 1.0762 41 1 1.4305 -10.4080 3.1984 42 1 0.4072 -11.4667 2.1933 43 1 3.1759 -12.2256 3.2463 44 1 1.6383 -12.7308 3.9934 45 1 2.5427 -15.3559 0.3688 46 1 3.1604 -14.9730 -1.9796 47 1 3.3322 -12.6745 -2.8487 48 1 2.8872 -10.7632 -1.3676 49 1 0.5488 -7.6122 -0.9811 50 1 -0.0106 -7.1178 0.6462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754936102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:16 Heat of formation + Delta-G solvation = -42.012361 kcal Electronic energy + Delta-G solvation = -29602.542993 eV Core-core repulsion = 25594.611810 eV Total energy + Delta-G solvation = -4007.931183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44924 -39.96341 -38.01110 -37.74953 -35.19425 -34.63158 -32.97684 -31.01964 -30.94776 -30.50676 -29.65623 -27.95896 -26.37115 -24.27077 -23.91404 -23.17447 -22.77269 -21.61740 -20.61228 -20.19099 -19.28909 -18.21675 -17.57894 -17.13436 -17.01658 -16.46962 -16.01873 -15.57015 -15.17143 -14.95845 -14.67760 -14.46860 -14.26091 -14.06526 -13.76294 -13.63553 -13.59874 -13.41885 -13.19225 -12.98341 -12.91999 -12.58805 -12.28309 -12.20123 -11.89253 -11.70129 -11.49837 -11.35995 -11.25354 -11.10909 -10.98084 -10.84741 -10.68232 -10.51085 -10.37098 -10.05590 -9.95712 -9.70061 -9.10497 -8.88714 -8.84438 -8.47412 -6.93505 -5.77821 -3.06694 0.98871 1.15167 2.32507 2.68094 2.92486 3.42289 3.46332 3.47141 3.49036 3.97077 4.15883 4.23348 4.30875 4.43390 4.53148 4.59722 4.63979 4.74328 4.78250 4.79583 4.87475 5.00293 5.02251 5.06717 5.15214 5.18833 5.20876 5.34177 5.44884 5.51689 5.52371 5.57821 5.63240 5.69449 5.74673 5.80090 5.85508 5.96174 6.05692 6.07481 6.14060 6.21254 6.25861 6.33477 6.35656 6.45926 6.80958 6.85820 7.08570 7.27374 7.68059 7.91941 8.41206 9.52075 10.10685 10.44765 11.45091 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.001770 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.343525 B =15812.328053 C =16203.430472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.084 0.916 14 C -0.126 4.126 15 C 0.097 3.903 16 N -0.617 5.617 17 C 0.536 3.464 18 O -0.528 6.528 19 C -0.060 4.060 20 H 0.101 0.899 21 C -0.149 4.149 22 C 0.066 3.934 23 O -0.316 6.316 24 C 0.139 3.861 25 C -0.152 4.152 26 C -0.084 4.084 27 C -0.151 4.151 28 C -0.064 4.064 29 C -0.144 4.144 30 C 0.108 3.892 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.125 0.875 48 H 0.119 0.881 49 H 0.079 0.921 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.662 -30.011 4.883 31.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.103 0.897 14 C -0.164 4.164 15 C -0.026 4.026 16 N -0.352 5.352 17 C 0.324 3.676 18 O -0.404 6.404 19 C -0.081 4.081 20 H 0.119 0.881 21 C -0.187 4.187 22 C -0.009 4.009 23 O -0.230 6.230 24 C 0.094 3.906 25 C -0.171 4.171 26 C -0.102 4.102 27 C -0.170 4.170 28 C -0.082 4.082 29 C -0.145 4.145 30 C -0.014 4.014 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.131 0.869 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.143 0.857 48 H 0.137 0.863 49 H 0.097 0.903 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.242 -30.341 4.562 31.525 hybrid contribution 0.204 1.375 0.014 1.390 sum 7.446 -28.966 4.576 30.255 Atomic orbital electron populations 1.69660 1.05118 1.25661 1.57771 1.24757 0.95548 0.97746 1.03067 0.86183 0.78617 0.83813 0.77530 1.21716 1.21753 1.20773 1.19228 0.91016 0.84206 1.42661 0.91206 1.42376 1.05910 1.00090 1.89520 1.20620 0.93457 0.85443 0.97729 1.21666 0.98663 0.92497 1.02549 1.22289 0.96894 0.94132 0.98013 0.89730 1.22735 1.02243 0.92801 0.98647 1.22154 0.90311 0.95071 0.95048 1.48570 1.32265 1.04945 1.49381 1.19893 0.84025 0.81340 0.82348 1.90741 1.33885 1.79291 1.36487 1.20145 0.99827 0.93038 0.95098 0.88072 1.22181 1.00913 0.99321 0.96264 1.22968 1.00960 0.85749 0.91262 1.85994 1.82474 1.38576 1.15914 1.18610 0.95541 0.92403 0.84086 1.20562 1.05062 0.97796 0.93670 1.20946 0.97611 0.97198 0.94424 1.21013 1.03462 0.92450 1.00037 1.20863 0.95917 0.99353 0.92052 1.19248 1.07382 0.92238 0.95657 1.22335 0.94553 0.85237 0.99238 0.93503 0.78310 0.96279 0.96543 0.91496 0.91569 0.89961 0.89485 0.91428 0.91367 0.89016 0.89441 0.91390 0.86872 0.85155 0.85326 0.85739 0.86267 0.90292 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.49 5.60 -59.90 -0.34 -18.82 16 10 C 0.16 2.96 6.11 -4.04 -0.02 2.94 16 11 C -0.12 -1.72 4.84 -26.72 -0.13 -1.85 16 12 C -0.09 -1.08 3.05 -88.59 -0.27 -1.35 16 13 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.13 -1.22 5.59 -24.90 -0.14 -1.35 16 15 C 0.10 0.79 5.97 -3.07 -0.02 0.77 16 16 N -0.62 -6.66 3.33 -170.66 -0.57 -7.23 16 17 C 0.54 6.47 5.76 -10.98 -0.06 6.41 16 18 O -0.53 -8.49 16.15 5.56 0.09 -8.40 16 19 C -0.06 -0.56 2.44 -92.85 -0.23 -0.78 16 20 H 0.10 0.73 6.89 -51.93 -0.36 0.37 16 21 C -0.15 -1.13 5.49 -26.49 -0.15 -1.28 16 22 C 0.07 0.42 7.03 37.37 0.26 0.69 16 23 O -0.32 -3.07 10.27 -19.23 -0.20 -3.27 16 24 C 0.14 1.46 6.47 -39.19 -0.25 1.21 16 25 C -0.15 -1.43 9.94 -39.34 -0.39 -1.82 16 26 C -0.08 -0.71 10.04 -39.66 -0.40 -1.11 16 27 C -0.15 -1.42 10.04 -39.61 -0.40 -1.82 16 28 C -0.06 -0.69 8.62 -39.53 -0.34 -1.03 16 29 C -0.14 -1.55 5.12 -104.44 -0.53 -2.09 16 30 C 0.11 1.27 6.40 -2.65 -0.02 1.26 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.38 10.15 7.67 -40.82 -0.31 9.84 16 33 H 0.02 0.36 7.51 -51.93 -0.39 -0.03 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 38 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 46 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 48 H 0.12 1.31 7.34 -52.49 -0.39 0.92 16 49 H 0.08 1.01 7.99 -51.93 -0.41 0.60 16 50 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -34.48 400.70 -10.75 -45.23 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.14 Total: 5.28 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.33 Total: -8.59 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.18 Total: -53.58 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.11 Total: -11.66 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.48 -10.75 -45.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754936102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.214 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds