Wall clock time and date at job start Wed Apr 1 2020 02:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99961 * 2 1 4 4 H 1.48503 * 109.46918 * 269.99946 * 3 2 1 5 5 H 1.48504 * 109.47092 * 29.99490 * 3 2 1 6 6 H 1.48500 * 109.47535 * 149.99767 * 3 2 1 7 7 C 1.38809 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00179 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99618 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46717 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46861 * 179.97438 * 11 10 9 13 13 H 1.08995 * 110.88652 * 302.57721 * 12 11 10 14 14 C 1.55157 * 111.00267 * 66.45757 * 12 11 10 15 15 C 1.54319 * 102.94296 * 153.61412 * 14 12 11 16 16 N 1.47023 * 107.27044 * 337.80246 * 15 14 12 17 17 C 1.34776 * 125.64743 * 178.89992 * 16 15 14 18 18 O 1.21280 * 119.99849 * 185.16164 * 17 16 15 19 19 C 1.50703 * 120.00189 * 5.17015 * 17 16 15 20 20 H 1.09000 * 109.42982 * 336.69884 * 19 17 16 21 21 C 1.53069 * 109.43849 * 96.56978 * 19 17 16 22 22 C 1.53402 * 108.30112 * 168.25780 * 21 19 17 23 23 O 1.42825 * 108.37631 * 295.28340 * 22 21 19 24 24 C 1.35839 * 117.85930 * 49.18279 * 23 22 21 25 25 C 1.39150 * 118.50198 * 162.93143 * 24 23 22 26 26 C 1.37968 * 120.21699 * 179.70962 * 25 24 23 27 27 C 1.38288 * 119.95729 * 0.02925 * 26 25 24 28 28 C 1.38103 * 119.98561 * 0.07497 * 27 26 25 29 29 C 1.38370 * 121.80760 * 342.79182 * 24 23 22 30 30 C 1.47423 * 108.70282 * 359.17078 * 16 15 14 31 31 H 0.97006 * 120.00302 * 0.02562 * 1 2 3 32 32 H 0.96993 * 119.99971 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.46983 * 60.00461 * 10 9 7 34 34 H 1.08996 * 109.47217 * 299.99737 * 10 9 7 35 35 H 1.08994 * 109.47013 * 60.00355 * 11 10 9 36 36 H 1.08996 * 109.47133 * 299.99874 * 11 10 9 37 37 H 1.08996 * 110.72364 * 35.24494 * 14 12 11 38 38 H 1.09007 * 110.86951 * 272.04431 * 14 12 11 39 39 H 1.08999 * 109.88046 * 218.38767 * 15 14 12 40 40 H 1.08998 * 110.01576 * 97.29647 * 15 14 12 41 41 H 1.09004 * 109.70093 * 287.96001 * 21 19 17 42 42 H 1.09003 * 109.70040 * 48.55266 * 21 19 17 43 43 H 1.08999 * 109.68580 * 55.00817 * 22 21 19 44 44 H 1.09000 * 109.68494 * 175.56448 * 22 21 19 45 45 H 1.08006 * 119.88953 * 359.73536 * 25 24 23 46 46 H 1.07994 * 120.01945 * 180.02562 * 26 25 24 47 47 H 1.08003 * 120.00827 * 180.09806 * 27 26 25 48 48 H 1.07998 * 119.84236 * 180.21659 * 28 27 26 49 49 H 1.09005 * 110.36989 * 142.73323 * 30 16 15 50 50 H 1.08999 * 110.36711 * 265.05927 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.8289 -6.1447 0.0005 13 1 2.4974 -6.2070 -0.8581 14 6 2.6090 -6.3371 1.3279 15 6 2.7139 -7.8720 1.4478 16 7 1.6354 -8.4483 0.6315 17 6 1.3998 -9.7638 0.4569 18 8 0.5378 -10.1282 -0.3145 19 6 2.2072 -10.7818 1.2202 20 1 3.1574 -10.3400 1.5203 21 6 1.4322 -11.2160 2.4667 22 6 2.1255 -12.4491 3.0599 23 8 2.0208 -13.5199 2.1205 24 6 2.3652 -13.2689 0.8308 25 6 2.6184 -14.3476 -0.0110 26 6 2.9651 -14.1335 -1.3291 27 6 3.0624 -12.8430 -1.8166 28 6 2.8140 -11.7699 -0.9836 29 6 2.4659 -11.9788 0.3407 30 6 0.8585 -7.3491 0.0304 31 1 -0.4851 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6847 -3.7144 0.8906 34 1 2.6847 -3.7144 -0.8894 35 1 0.4369 -4.7622 -0.8886 36 1 0.4376 -4.7618 0.8914 37 1 2.0508 -5.9219 2.1670 38 1 3.5996 -5.8866 1.2649 39 1 2.5916 -8.1717 2.4886 40 1 3.6812 -8.2100 1.0762 41 1 1.4305 -10.4080 3.1984 42 1 0.4072 -11.4667 2.1933 43 1 3.1759 -12.2256 3.2463 44 1 1.6383 -12.7308 3.9934 45 1 2.5427 -15.3559 0.3688 46 1 3.1604 -14.9730 -1.9796 47 1 3.3322 -12.6745 -2.8487 48 1 2.8872 -10.7632 -1.3676 49 1 0.5488 -7.6122 -0.9811 50 1 -0.0106 -7.1178 0.6462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754936102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:15 Heat of formation + Delta-G solvation = -62.927009 kcal Electronic energy + Delta-G solvation = -29603.449921 eV Core-core repulsion = 25594.611810 eV Total energy + Delta-G solvation = -4008.838110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.17966 -40.80029 -38.96798 -38.43655 -36.83336 -35.40788 -34.47226 -32.58663 -31.63987 -31.22060 -30.61604 -29.21909 -27.32725 -25.63597 -24.81629 -24.14054 -23.53050 -23.08880 -21.37585 -21.20169 -20.10942 -19.13264 -18.90892 -18.37590 -17.71637 -17.27498 -16.83291 -16.69988 -16.32666 -15.96108 -15.85891 -15.39403 -15.25390 -15.14972 -15.05896 -14.79844 -14.47270 -14.32331 -14.19987 -13.98953 -13.84672 -13.50639 -13.24496 -13.08885 -12.93652 -12.85659 -12.78382 -12.54185 -12.34730 -12.18137 -12.16760 -11.97493 -11.81634 -11.67484 -11.60782 -11.56646 -11.50078 -10.92149 -10.88461 -9.81649 -9.73299 -9.16765 -8.99239 -7.95028 -5.24031 0.28488 0.43242 1.43434 1.47790 1.49739 1.58152 1.84176 2.34099 2.56517 2.75489 3.24675 3.38878 3.44423 3.55809 3.59197 3.67710 3.75520 3.81346 4.03430 4.08621 4.16665 4.18057 4.27054 4.32716 4.36484 4.45561 4.46174 4.49440 4.51565 4.59557 4.60309 4.63210 4.77837 4.81842 4.85354 4.88549 4.92573 4.95954 5.01544 5.09999 5.20239 5.27574 5.30271 5.38571 5.43818 5.46222 5.50446 5.55725 5.81153 6.27643 6.41047 6.44839 7.02007 7.33390 8.10991 8.32497 9.28690 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.001770 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.343525 B =15812.328053 C =16203.430472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.102 4.102 12 C -0.084 4.084 13 H 0.086 0.914 14 C -0.123 4.123 15 C 0.096 3.904 16 N -0.615 5.615 17 C 0.535 3.465 18 O -0.579 6.579 19 C -0.055 4.055 20 H 0.127 0.873 21 C -0.145 4.145 22 C 0.062 3.938 23 O -0.330 6.330 24 C 0.124 3.876 25 C -0.163 4.163 26 C -0.082 4.082 27 C -0.161 4.161 28 C -0.084 4.084 29 C -0.160 4.160 30 C 0.110 3.890 31 H 0.251 0.749 32 H 0.372 0.628 33 H 0.032 0.968 34 H 0.017 0.983 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.138 0.862 45 H 0.145 0.855 46 H 0.157 0.843 47 H 0.139 0.861 48 H 0.109 0.891 49 H 0.061 0.939 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.957 -31.094 6.311 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.028 3.972 11 C -0.141 4.141 12 C -0.104 4.104 13 H 0.105 0.895 14 C -0.161 4.161 15 C -0.025 4.025 16 N -0.348 5.348 17 C 0.324 3.676 18 O -0.458 6.458 19 C -0.076 4.076 20 H 0.145 0.855 21 C -0.183 4.183 22 C -0.012 4.012 23 O -0.244 6.244 24 C 0.079 3.921 25 C -0.181 4.181 26 C -0.100 4.100 27 C -0.179 4.179 28 C -0.102 4.102 29 C -0.161 4.161 30 C -0.013 4.013 31 H 0.060 0.940 32 H 0.204 0.796 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.135 0.865 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.156 0.844 45 H 0.163 0.837 46 H 0.175 0.825 47 H 0.157 0.843 48 H 0.127 0.873 49 H 0.080 0.920 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.599 -31.443 6.014 33.421 hybrid contribution -0.506 1.654 -0.452 1.788 sum 9.093 -29.789 5.562 31.639 Atomic orbital electron populations 1.69822 1.06687 1.26069 1.59622 1.25617 0.96442 1.01292 1.03821 0.85117 0.77779 0.79336 0.77397 1.21541 1.22230 1.19131 1.19667 0.91595 0.85372 1.41021 0.90419 1.42652 1.05703 1.01528 1.89469 1.20801 0.94056 0.84408 0.97943 1.21489 0.97847 0.92776 1.01944 1.22112 0.96670 0.91950 0.99669 0.89519 1.22736 1.02273 0.94130 0.96940 1.22358 0.90186 0.93700 0.96260 1.48633 1.32554 1.04460 1.49182 1.20423 0.83521 0.81890 0.81777 1.90711 1.36204 1.80117 1.38779 1.20207 1.00565 0.91791 0.95033 0.85498 1.22196 0.99239 1.00826 0.96064 1.23268 1.02331 0.84456 0.91183 1.85971 1.82502 1.40051 1.15884 1.18831 0.95831 0.92624 0.84782 1.20902 1.04779 0.98390 0.94039 1.21284 0.96503 0.97682 0.94545 1.21290 1.03278 0.92658 1.00704 1.20954 0.97143 0.99385 0.92725 1.19448 1.07729 0.93017 0.95954 1.22192 0.94802 0.85831 0.98463 0.94047 0.79616 0.95008 0.96534 0.92671 0.91733 0.90112 0.88433 0.88679 0.89361 0.86456 0.92103 0.89448 0.84447 0.83675 0.82533 0.84283 0.87288 0.92029 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.24 -13.59 9.99 84.03 0.84 -12.75 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.75 -37.89 5.60 -343.43 -1.92 -39.81 16 10 C 0.15 5.77 6.11 86.38 0.53 6.29 16 11 C -0.10 -3.01 4.84 30.60 0.15 -2.86 16 12 C -0.08 -1.86 3.05 -9.48 -0.03 -1.89 16 13 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 14 C -0.12 -2.04 5.59 31.78 0.18 -1.87 16 15 C 0.10 1.26 5.97 86.73 0.52 1.78 16 16 N -0.62 -12.52 3.33 -812.24 -2.70 -15.22 16 17 C 0.53 12.72 5.76 87.66 0.50 13.22 16 18 O -0.58 -19.31 16.15 -3.03 -0.05 -19.36 16 19 C -0.06 -0.95 2.44 -12.24 -0.03 -0.98 16 20 H 0.13 1.45 6.89 -2.39 -0.02 1.43 16 21 C -0.15 -1.95 5.49 30.75 0.17 -1.78 16 22 C 0.06 0.65 7.03 72.12 0.51 1.15 16 23 O -0.33 -5.98 10.27 -91.74 -0.94 -6.93 16 24 C 0.12 2.54 6.47 22.52 0.15 2.68 16 25 C -0.16 -2.88 9.94 22.42 0.22 -2.66 16 26 C -0.08 -1.29 10.04 22.22 0.22 -1.07 16 27 C -0.16 -2.95 10.04 22.25 0.22 -2.73 16 28 C -0.08 -1.83 8.62 22.30 0.19 -1.64 16 29 C -0.16 -3.38 5.12 -19.75 -0.10 -3.48 16 30 C 0.11 2.57 6.40 86.78 0.56 3.12 16 31 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 32 H 0.37 20.11 7.67 -92.71 -0.71 19.40 16 33 H 0.03 1.13 7.51 -2.39 -0.02 1.12 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.93 8.11 -2.39 -0.02 1.91 16 37 H 0.08 1.41 8.01 -2.39 -0.02 1.39 16 38 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 0.87 7.92 -2.39 -0.02 0.86 16 41 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 43 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 46 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 47 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 48 H 0.11 2.49 7.34 -2.91 -0.02 2.47 16 49 H 0.06 1.65 7.99 -2.38 -0.02 1.63 16 50 H 0.07 1.63 8.03 -2.39 -0.02 1.61 16 Total: -1.00 -76.34 400.70 2.17 -74.17 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.22 Total: 28.25 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.26 Total: -9.56 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -4.34 Total: -114.43 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.99 Total: -26.28 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -76.34 2.17 -74.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754936102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.244 kcal (2) G-P(sol) polarization free energy of solvation -76.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds