Wall clock time and date at job start Wed Apr 1 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48501 * 109.47428 * 240.00618 * 3 2 1 5 5 H 1.48511 * 109.47148 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47295 * 120.00242 * 3 2 1 7 7 C 1.38810 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99649 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00025 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47148 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47343 * 179.97438 * 11 10 9 13 13 H 1.08997 * 110.88032 * 57.42548 * 12 11 10 14 14 C 1.55155 * 111.00513 * 293.54908 * 12 11 10 15 15 C 1.54320 * 102.94351 * 206.42024 * 14 12 11 16 16 N 1.47018 * 107.27054 * 22.19459 * 15 14 12 17 17 C 1.34778 * 125.65261 * 181.02361 * 16 15 14 18 18 O 1.21275 * 120.00369 * 185.17274 * 17 16 15 19 19 C 1.50698 * 119.99552 * 5.17512 * 17 16 15 20 20 H 1.09000 * 109.40333 * 336.75921 * 19 17 16 21 21 C 1.53072 * 109.44064 * 96.65650 * 19 17 16 22 22 C 1.53410 * 108.29187 * 168.27088 * 21 19 17 23 23 O 1.42828 * 108.37996 * 295.26189 * 22 21 19 24 24 C 1.35844 * 117.86413 * 49.11872 * 23 22 21 25 25 C 1.39145 * 118.49455 * 163.01135 * 24 23 22 26 26 C 1.37963 * 120.21761 * 179.79789 * 25 24 23 27 27 C 1.38293 * 119.95880 * 359.97438 * 26 25 24 28 28 C 1.38107 * 119.98157 * 0.08319 * 27 26 25 29 29 C 1.38371 * 121.81491 * 342.94672 * 24 23 22 30 30 C 1.47430 * 108.70414 * 1.28498 * 16 15 14 31 31 H 0.96997 * 120.00453 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99823 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47156 * 59.99461 * 10 9 7 34 34 H 1.09009 * 109.46927 * 300.00007 * 10 9 7 35 35 H 1.09006 * 109.47024 * 60.00378 * 11 10 9 36 36 H 1.08995 * 109.47372 * 300.00013 * 11 10 9 37 37 H 1.09006 * 110.72261 * 88.05556 * 14 12 11 38 38 H 1.09004 * 110.72216 * 324.78877 * 14 12 11 39 39 H 1.08998 * 109.88367 * 262.77395 * 15 14 12 40 40 H 1.09001 * 110.00927 * 141.68248 * 15 14 12 41 41 H 1.09000 * 109.69951 * 48.57716 * 21 19 17 42 42 H 1.08999 * 109.70259 * 287.97244 * 21 19 17 43 43 H 1.09002 * 109.68145 * 175.53975 * 22 21 19 44 44 H 1.08992 * 109.71362 * 54.99955 * 22 21 19 45 45 H 1.08004 * 119.89379 * 359.76793 * 25 24 23 46 46 H 1.07997 * 120.02505 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.00824 * 180.02562 * 27 26 25 48 48 H 1.07998 * 119.83876 * 180.02562 * 28 27 26 49 49 H 1.08997 * 110.36390 * 94.48309 * 30 16 15 50 50 H 1.09006 * 110.36672 * 216.80780 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 6 1.8291 -6.1447 -0.0026 13 1 2.4994 -6.2074 0.8545 14 6 2.6063 -6.3363 -1.3317 15 6 2.7101 -7.8712 -1.4532 16 7 1.6331 -8.4477 -0.6352 17 6 1.3961 -9.7631 -0.4624 18 8 0.4209 -10.1270 0.1601 19 6 2.3429 -10.7819 -1.0426 20 1 2.8882 -10.3367 -1.8749 21 6 3.3340 -11.2282 0.0351 22 6 4.0854 -12.4614 -0.4827 23 8 3.1473 -13.5269 -0.6407 24 6 1.9973 -13.2656 -1.3149 25 6 1.2482 -14.3375 -1.7901 26 6 0.0723 -14.1131 -2.4758 27 6 -0.3649 -12.8190 -2.6919 28 6 0.3767 -11.7525 -2.2228 29 6 1.5591 -11.9718 -1.5357 30 6 0.8513 -7.3484 -0.0403 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 0.0002 33 1 2.6856 -3.7148 0.8877 34 1 2.6842 -3.7140 -0.8922 35 1 0.4364 -4.7618 -0.8901 36 1 0.4384 -4.7622 0.8899 37 1 3.5972 -5.8867 -1.2673 38 1 2.0466 -5.9200 -2.1693 39 1 3.6782 -8.2079 -1.0822 40 1 2.5870 -8.1722 -2.4936 41 1 2.7947 -11.4830 0.9474 42 1 4.0422 -10.4250 0.2384 43 1 4.8531 -12.7516 0.2346 44 1 4.5475 -12.2339 -1.4432 45 1 1.5886 -15.3486 -1.6220 46 1 -0.5070 -14.9474 -2.8429 47 1 -1.2856 -12.6424 -3.2283 48 1 0.0329 -10.7429 -2.3925 49 1 -0.0137 -7.1182 -0.6623 50 1 0.5346 -7.6112 0.9691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754936103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:19 Heat of formation + Delta-G solvation = -41.786344 kcal Electronic energy + Delta-G solvation = -29594.362103 eV Core-core repulsion = 25586.440720 eV Total energy + Delta-G solvation = -4007.921382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44780 -39.95672 -38.00739 -37.74687 -35.19313 -34.62909 -32.97282 -31.01908 -30.94345 -30.50877 -29.64659 -27.95244 -26.36914 -24.26388 -23.91689 -23.17471 -22.77125 -21.61555 -20.60902 -20.19124 -19.31170 -18.16796 -17.58797 -17.13268 -17.01476 -16.29687 -16.22907 -15.56686 -15.32744 -14.79883 -14.63253 -14.48194 -14.25848 -14.01318 -13.83726 -13.65982 -13.54150 -13.36998 -13.18854 -13.13139 -12.81628 -12.59773 -12.34916 -12.14121 -11.90391 -11.68503 -11.50365 -11.36724 -11.24492 -11.10298 -10.98431 -10.82750 -10.69680 -10.51939 -10.36708 -10.07753 -9.95552 -9.69459 -9.10541 -8.88237 -8.84724 -8.47364 -6.93464 -5.77495 -3.06471 0.98848 1.15164 2.32501 2.68264 2.92518 3.42773 3.46371 3.47003 3.48327 3.97307 4.15558 4.24028 4.30744 4.43413 4.52444 4.59580 4.64082 4.75204 4.77895 4.79897 4.87917 4.99953 5.02398 5.06294 5.15234 5.18940 5.20897 5.33474 5.44886 5.51579 5.52358 5.57624 5.62456 5.69364 5.75385 5.79950 5.85795 5.96126 6.05245 6.07412 6.14013 6.21043 6.25767 6.33527 6.35668 6.45895 6.80871 6.85726 7.08587 7.27496 7.67605 7.92007 8.41525 9.52250 10.10886 10.44949 11.45347 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027718 B = 0.001770 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.940660 B =15812.405189 C =16365.155829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.093 4.093 13 H 0.085 0.915 14 C -0.127 4.127 15 C 0.097 3.903 16 N -0.618 5.618 17 C 0.536 3.464 18 O -0.528 6.528 19 C -0.060 4.060 20 H 0.101 0.899 21 C -0.149 4.149 22 C 0.066 3.934 23 O -0.316 6.316 24 C 0.139 3.861 25 C -0.152 4.152 26 C -0.084 4.084 27 C -0.152 4.152 28 C -0.064 4.064 29 C -0.144 4.144 30 C 0.109 3.891 31 H 0.256 0.744 32 H 0.384 0.616 33 H 0.016 0.984 34 H 0.019 0.981 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.125 0.875 48 H 0.119 0.881 49 H 0.071 0.929 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 -29.973 -5.575 31.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.103 0.897 14 C -0.165 4.165 15 C -0.026 4.026 16 N -0.352 5.352 17 C 0.324 3.676 18 O -0.404 6.404 19 C -0.081 4.081 20 H 0.119 0.881 21 C -0.187 4.187 22 C -0.009 4.009 23 O -0.230 6.230 24 C 0.094 3.906 25 C -0.171 4.171 26 C -0.102 4.102 27 C -0.170 4.170 28 C -0.082 4.082 29 C -0.145 4.145 30 C -0.013 4.013 31 H 0.066 0.934 32 H 0.217 0.783 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.143 0.857 48 H 0.137 0.863 49 H 0.090 0.910 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.750 -30.299 -5.139 31.464 hybrid contribution 0.191 1.371 -0.057 1.385 sum 6.940 -28.928 -5.197 30.199 Atomic orbital electron populations 1.69649 1.05115 1.25791 1.57669 1.24758 0.95546 0.97740 1.03036 0.86258 0.78511 0.83516 0.77827 1.21273 1.21662 1.21276 1.19181 0.90981 0.84219 1.42819 0.91264 1.42368 1.05907 1.00076 1.89531 1.20618 0.93459 0.85457 0.97709 1.21673 0.98677 0.92517 1.02563 1.22375 0.96809 0.94122 0.97976 0.89668 1.22741 1.02250 0.92814 0.98653 1.22155 0.90367 0.95061 0.94993 1.48578 1.32185 1.04942 1.49478 1.19893 0.85932 0.81350 0.80456 1.90741 1.28923 1.79323 1.41396 1.20146 0.95735 0.93078 0.99148 0.88081 1.22181 0.98483 0.99271 0.98725 1.22969 0.90205 0.85903 1.01868 1.85996 1.27381 1.38519 1.71064 1.18610 0.86926 0.92356 0.92729 1.20559 0.96609 0.97875 1.02051 1.20947 0.95053 0.97137 0.97039 1.21015 1.00704 0.92476 1.02778 1.20859 0.92854 0.99373 0.95090 1.19251 0.98435 0.92245 1.04615 1.22422 0.94499 0.85232 0.99123 0.93444 0.78304 0.96573 0.96284 0.91566 0.91490 0.89481 0.89950 0.91425 0.91379 0.89439 0.88997 0.86876 0.91391 0.85153 0.85325 0.85741 0.86287 0.91032 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.48 5.60 -59.91 -0.34 -18.82 16 10 C 0.16 2.96 6.11 -4.04 -0.02 2.94 16 11 C -0.12 -1.73 4.84 -26.73 -0.13 -1.85 16 12 C -0.09 -1.07 3.09 -88.35 -0.27 -1.34 16 13 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.13 -1.22 5.59 -24.90 -0.14 -1.36 16 15 C 0.10 0.79 5.92 -3.07 -0.02 0.77 16 16 N -0.62 -6.66 3.32 -170.38 -0.57 -7.23 16 17 C 0.54 6.47 5.76 -10.99 -0.06 6.41 16 18 O -0.53 -8.49 16.22 5.56 0.09 -8.40 16 19 C -0.06 -0.56 2.45 -92.85 -0.23 -0.78 16 20 H 0.10 0.73 6.93 -51.93 -0.36 0.37 16 21 C -0.15 -1.13 5.49 -26.48 -0.15 -1.27 16 22 C 0.07 0.42 7.03 37.37 0.26 0.68 16 23 O -0.32 -3.07 10.27 -19.25 -0.20 -3.27 16 24 C 0.14 1.47 6.47 -39.20 -0.25 1.21 16 25 C -0.15 -1.43 9.94 -39.35 -0.39 -1.82 16 26 C -0.08 -0.71 10.04 -39.66 -0.40 -1.11 16 27 C -0.15 -1.42 10.04 -39.61 -0.40 -1.82 16 28 C -0.06 -0.69 8.61 -39.53 -0.34 -1.03 16 29 C -0.14 -1.56 5.12 -104.44 -0.53 -2.09 16 30 C 0.11 1.28 6.36 -2.41 -0.02 1.27 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.02 0.36 7.51 -51.92 -0.39 -0.03 16 35 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.78 8.13 -51.93 -0.42 0.36 16 38 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.47 8.00 -51.93 -0.42 0.06 16 41 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 46 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 48 H 0.12 1.31 7.35 -52.49 -0.39 0.92 16 49 H 0.07 0.86 8.04 -51.93 -0.42 0.45 16 50 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 LS Contribution 400.94 15.07 6.04 6.04 Total: -1.00 -34.46 400.94 -10.76 -45.22 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.16 Total: 5.31 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.33 Total: -8.59 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.18 Total: -53.58 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.11 Total: -11.67 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.46 -10.76 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754936103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.432 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds