Wall clock time and date at job start Wed Apr 1 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48501 * 109.47428 * 240.00618 * 3 2 1 5 5 H 1.48511 * 109.47148 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47295 * 120.00242 * 3 2 1 7 7 C 1.38810 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99649 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00025 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47148 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47343 * 179.97438 * 11 10 9 13 13 H 1.08997 * 110.88032 * 57.42548 * 12 11 10 14 14 C 1.55155 * 111.00513 * 293.54908 * 12 11 10 15 15 C 1.54320 * 102.94351 * 206.42024 * 14 12 11 16 16 N 1.47018 * 107.27054 * 22.19459 * 15 14 12 17 17 C 1.34778 * 125.65261 * 181.02361 * 16 15 14 18 18 O 1.21275 * 120.00369 * 185.17274 * 17 16 15 19 19 C 1.50698 * 119.99552 * 5.17512 * 17 16 15 20 20 H 1.09000 * 109.40333 * 336.75921 * 19 17 16 21 21 C 1.53072 * 109.44064 * 96.65650 * 19 17 16 22 22 C 1.53410 * 108.29187 * 168.27088 * 21 19 17 23 23 O 1.42828 * 108.37996 * 295.26189 * 22 21 19 24 24 C 1.35844 * 117.86413 * 49.11872 * 23 22 21 25 25 C 1.39145 * 118.49455 * 163.01135 * 24 23 22 26 26 C 1.37963 * 120.21761 * 179.79789 * 25 24 23 27 27 C 1.38293 * 119.95880 * 359.97438 * 26 25 24 28 28 C 1.38107 * 119.98157 * 0.08319 * 27 26 25 29 29 C 1.38371 * 121.81491 * 342.94672 * 24 23 22 30 30 C 1.47430 * 108.70414 * 1.28498 * 16 15 14 31 31 H 0.96997 * 120.00453 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99823 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47156 * 59.99461 * 10 9 7 34 34 H 1.09009 * 109.46927 * 300.00007 * 10 9 7 35 35 H 1.09006 * 109.47024 * 60.00378 * 11 10 9 36 36 H 1.08995 * 109.47372 * 300.00013 * 11 10 9 37 37 H 1.09006 * 110.72261 * 88.05556 * 14 12 11 38 38 H 1.09004 * 110.72216 * 324.78877 * 14 12 11 39 39 H 1.08998 * 109.88367 * 262.77395 * 15 14 12 40 40 H 1.09001 * 110.00927 * 141.68248 * 15 14 12 41 41 H 1.09000 * 109.69951 * 48.57716 * 21 19 17 42 42 H 1.08999 * 109.70259 * 287.97244 * 21 19 17 43 43 H 1.09002 * 109.68145 * 175.53975 * 22 21 19 44 44 H 1.08992 * 109.71362 * 54.99955 * 22 21 19 45 45 H 1.08004 * 119.89379 * 359.76793 * 25 24 23 46 46 H 1.07997 * 120.02505 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.00824 * 180.02562 * 27 26 25 48 48 H 1.07998 * 119.83876 * 180.02562 * 28 27 26 49 49 H 1.08997 * 110.36390 * 94.48309 * 30 16 15 50 50 H 1.09006 * 110.36672 * 216.80780 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 6 1.8291 -6.1447 -0.0026 13 1 2.4994 -6.2074 0.8545 14 6 2.6063 -6.3363 -1.3317 15 6 2.7101 -7.8712 -1.4532 16 7 1.6331 -8.4477 -0.6352 17 6 1.3961 -9.7631 -0.4624 18 8 0.4209 -10.1270 0.1601 19 6 2.3429 -10.7819 -1.0426 20 1 2.8882 -10.3367 -1.8749 21 6 3.3340 -11.2282 0.0351 22 6 4.0854 -12.4614 -0.4827 23 8 3.1473 -13.5269 -0.6407 24 6 1.9973 -13.2656 -1.3149 25 6 1.2482 -14.3375 -1.7901 26 6 0.0723 -14.1131 -2.4758 27 6 -0.3649 -12.8190 -2.6919 28 6 0.3767 -11.7525 -2.2228 29 6 1.5591 -11.9718 -1.5357 30 6 0.8513 -7.3484 -0.0403 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 0.0002 33 1 2.6856 -3.7148 0.8877 34 1 2.6842 -3.7140 -0.8922 35 1 0.4364 -4.7618 -0.8901 36 1 0.4384 -4.7622 0.8899 37 1 3.5972 -5.8867 -1.2673 38 1 2.0466 -5.9200 -2.1693 39 1 3.6782 -8.2079 -1.0822 40 1 2.5870 -8.1722 -2.4936 41 1 2.7947 -11.4830 0.9474 42 1 4.0422 -10.4250 0.2384 43 1 4.8531 -12.7516 0.2346 44 1 4.5475 -12.2339 -1.4432 45 1 1.5886 -15.3486 -1.6220 46 1 -0.5070 -14.9474 -2.8429 47 1 -1.2856 -12.6424 -3.2283 48 1 0.0329 -10.7429 -2.3925 49 1 -0.0137 -7.1182 -0.6623 50 1 0.5346 -7.6112 0.9691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754936103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:18 Heat of formation + Delta-G solvation = -62.701935 kcal Electronic energy + Delta-G solvation = -29595.269071 eV Core-core repulsion = 25586.440720 eV Total energy + Delta-G solvation = -4008.828350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.17864 -40.79388 -38.96227 -38.43649 -36.82960 -35.40447 -34.46865 -32.58030 -31.63926 -31.22351 -30.61092 -29.20742 -27.32562 -25.63189 -24.81054 -24.14535 -23.53006 -23.08627 -21.34802 -21.22327 -20.12628 -19.14731 -18.82916 -18.39589 -17.71067 -17.19637 -16.96223 -16.67055 -16.41027 -16.01443 -15.73251 -15.38052 -15.30181 -15.12511 -15.02884 -14.73649 -14.47927 -14.29013 -14.24951 -14.01205 -13.88527 -13.46424 -13.26474 -13.08052 -12.92783 -12.85152 -12.73847 -12.55223 -12.34281 -12.23048 -12.17275 -11.96124 -11.81840 -11.67408 -11.62579 -11.55260 -11.49660 -10.90841 -10.88063 -9.81862 -9.73842 -9.16856 -8.98925 -7.94535 -5.23641 0.28260 0.43023 1.43332 1.47882 1.51179 1.57325 1.84304 2.34112 2.56925 2.75334 3.24947 3.39154 3.43494 3.57640 3.59053 3.66791 3.74169 3.83064 4.03282 4.09032 4.16727 4.18293 4.27750 4.33310 4.34695 4.45394 4.46280 4.49261 4.51435 4.59524 4.60241 4.63421 4.77960 4.82075 4.85947 4.88325 4.92734 4.95846 5.01530 5.09519 5.20658 5.27355 5.30229 5.38758 5.43533 5.46721 5.50495 5.55447 5.80923 6.27918 6.41083 6.44833 7.01950 7.33615 8.11439 8.32773 9.29014 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027718 B = 0.001770 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.940660 B =15812.405189 C =16365.155829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.103 4.103 12 C -0.082 4.082 13 H 0.092 0.908 14 C -0.124 4.124 15 C 0.097 3.903 16 N -0.616 5.616 17 C 0.534 3.466 18 O -0.579 6.579 19 C -0.055 4.055 20 H 0.127 0.873 21 C -0.145 4.145 22 C 0.062 3.938 23 O -0.330 6.330 24 C 0.125 3.875 25 C -0.163 4.163 26 C -0.082 4.082 27 C -0.161 4.161 28 C -0.084 4.084 29 C -0.160 4.160 30 C 0.110 3.890 31 H 0.251 0.749 32 H 0.372 0.628 33 H 0.019 0.981 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.138 0.862 44 H 0.087 0.913 45 H 0.146 0.854 46 H 0.157 0.843 47 H 0.139 0.861 48 H 0.108 0.892 49 H 0.064 0.936 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 -31.068 -6.500 33.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.028 3.972 11 C -0.142 4.142 12 C -0.102 4.102 13 H 0.110 0.890 14 C -0.161 4.161 15 C -0.025 4.025 16 N -0.348 5.348 17 C 0.324 3.676 18 O -0.458 6.458 19 C -0.076 4.076 20 H 0.145 0.855 21 C -0.183 4.183 22 C -0.013 4.013 23 O -0.244 6.244 24 C 0.080 3.920 25 C -0.181 4.181 26 C -0.100 4.100 27 C -0.180 4.180 28 C -0.102 4.102 29 C -0.162 4.162 30 C -0.013 4.013 31 H 0.060 0.940 32 H 0.203 0.797 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.136 0.864 43 H 0.156 0.844 44 H 0.105 0.895 45 H 0.163 0.837 46 H 0.175 0.825 47 H 0.157 0.843 48 H 0.126 0.874 49 H 0.082 0.918 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.513 -31.413 -6.082 33.381 hybrid contribution -0.649 1.651 0.242 1.791 sum 8.864 -29.762 -5.840 31.598 Atomic orbital electron populations 1.69817 1.06703 1.26148 1.59566 1.25626 0.96436 1.01320 1.03801 0.85183 0.77161 0.78963 0.78281 1.20130 1.22314 1.20366 1.19636 0.91606 0.85373 1.41147 0.90382 1.42652 1.05692 1.01549 1.89492 1.20801 0.94038 0.84358 0.97990 1.21501 0.97894 0.92933 1.01851 1.22200 0.96545 0.91746 0.99706 0.88963 1.22742 1.02389 0.94132 0.96880 1.22359 0.90653 0.93705 0.95778 1.48641 1.32507 1.04456 1.49245 1.20425 0.85664 0.81903 0.79639 1.90711 1.31171 1.80153 1.43770 1.20209 0.95307 0.91831 1.00251 0.85526 1.22195 0.98346 1.00763 0.96978 1.23272 0.89781 0.84636 1.03569 1.85973 1.27493 1.39995 1.70939 1.18828 0.87604 0.92560 0.93037 1.20901 0.96817 0.98487 1.01902 1.21285 0.94891 0.97592 0.96240 1.21291 1.01168 0.92704 1.02791 1.20950 0.93667 0.99379 0.96241 1.19451 0.98793 0.93040 1.04888 1.22279 0.94676 0.85929 0.98370 0.94050 0.79656 0.96351 0.95054 0.92022 0.92610 0.88128 0.90576 0.88500 0.89552 0.92087 0.86380 0.84430 0.89456 0.83656 0.82525 0.84302 0.87353 0.91812 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.25 -13.64 9.99 84.03 0.84 -12.80 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.75 -37.91 5.60 -343.45 -1.92 -39.84 16 10 C 0.15 5.75 6.11 86.38 0.53 6.27 16 11 C -0.10 -3.05 4.84 30.59 0.15 -2.90 16 12 C -0.08 -1.78 3.09 -9.32 -0.03 -1.81 16 13 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 14 C -0.12 -2.06 5.59 31.78 0.18 -1.88 16 15 C 0.10 1.27 5.92 86.73 0.51 1.78 16 16 N -0.62 -12.55 3.32 -811.36 -2.70 -15.24 16 17 C 0.53 12.73 5.76 87.66 0.50 13.23 16 18 O -0.58 -19.34 16.22 -3.01 -0.05 -19.39 16 19 C -0.06 -0.95 2.45 -12.24 -0.03 -0.98 16 20 H 0.13 1.45 6.93 -2.39 -0.02 1.44 16 21 C -0.14 -1.92 5.49 30.76 0.17 -1.76 16 22 C 0.06 0.64 7.03 72.12 0.51 1.14 16 23 O -0.33 -5.97 10.27 -91.80 -0.94 -6.91 16 24 C 0.12 2.55 6.47 22.52 0.15 2.69 16 25 C -0.16 -2.88 9.94 22.42 0.22 -2.66 16 26 C -0.08 -1.30 10.04 22.22 0.22 -1.08 16 27 C -0.16 -2.98 10.04 22.25 0.22 -2.75 16 28 C -0.08 -1.85 8.61 22.30 0.19 -1.66 16 29 C -0.16 -3.39 5.12 -19.75 -0.10 -3.49 16 30 C 0.11 2.58 6.36 86.93 0.55 3.14 16 31 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.37 20.14 7.67 -92.71 -0.71 19.43 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.03 1.11 7.51 -2.38 -0.02 1.10 16 35 H 0.06 1.87 8.11 -2.38 -0.02 1.85 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 1.45 8.13 -2.38 -0.02 1.43 16 38 H 0.08 1.39 8.01 -2.38 -0.02 1.37 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.89 8.00 -2.39 -0.02 0.87 16 41 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 42 H 0.12 0.90 8.14 -2.39 -0.02 0.89 16 43 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 47 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 48 H 0.11 2.50 7.35 -2.91 -0.02 2.48 16 49 H 0.06 1.58 8.04 -2.39 -0.02 1.56 16 50 H 0.06 1.66 8.09 -2.38 -0.02 1.64 16 Total: -1.00 -76.44 400.94 2.17 -74.27 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.22 Total: 28.42 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.25 Total: -9.63 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -4.34 Total: -114.57 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.99 Total: -26.30 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -76.44 2.17 -74.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754936103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.570 kcal (2) G-P(sol) polarization free energy of solvation -76.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds