Wall clock time and date at job start Wed Apr 1 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00109 * 2 1 4 4 H 1.48499 * 109.47100 * 267.52269 * 3 2 1 5 5 H 1.48496 * 109.47127 * 27.52671 * 3 2 1 6 6 H 1.48503 * 109.46995 * 147.52838 * 3 2 1 7 7 C 1.38820 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00012 * 30.23358 * 7 2 1 9 9 N 1.36939 * 119.99659 * 210.22961 * 7 2 1 10 10 C 1.47227 * 121.32981 * 36.63212 * 9 7 2 11 11 C 1.52795 * 107.90678 * 115.83212 * 10 9 7 12 12 C 1.50603 * 110.85075 * 47.51702 * 11 10 9 13 13 C 1.38987 * 117.62548 * 160.29300 * 12 11 10 14 14 C 1.37907 * 120.58035 * 178.88154 * 13 12 11 15 15 C 1.38263 * 119.82553 * 0.07430 * 14 13 12 16 16 C 1.37954 * 119.71888 * 0.26921 * 15 14 13 17 17 C 1.37665 * 122.85270 * 339.69535 * 12 11 10 18 18 C 1.46680 * 121.32458 * 216.65451 * 9 7 2 19 19 H 1.09007 * 109.39704 * 104.32426 * 18 9 7 20 20 C 1.52997 * 109.43641 * 344.43190 * 18 9 7 21 21 N 1.46500 * 109.47123 * 58.83132 * 20 18 9 22 22 C 1.34775 * 119.99940 * 185.38267 * 21 20 18 23 23 O 1.21285 * 119.99829 * 0.02562 * 22 21 20 24 24 C 1.50702 * 120.00081 * 180.02562 * 22 21 20 25 25 O 1.42904 * 109.47103 * 180.02562 * 24 22 21 26 26 C 1.42897 * 113.99798 * 179.97438 * 25 24 22 27 27 C 1.52998 * 109.46923 * 180.02562 * 26 25 24 28 28 C 1.53001 * 117.50177 * 243.62037 * 27 26 25 29 29 C 1.53000 * 117.49927 * 174.99684 * 27 26 25 30 30 H 0.97000 * 119.99820 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.77619 * 235.43831 * 10 9 7 32 32 H 1.08998 * 109.77491 * 356.18217 * 10 9 7 33 33 H 1.08994 * 109.20050 * 167.88375 * 11 10 9 34 34 H 1.08996 * 109.20567 * 287.23189 * 11 10 9 35 35 H 1.08005 * 119.70769 * 359.15437 * 13 12 11 36 36 H 1.07998 * 120.08542 * 180.02562 * 14 13 12 37 37 H 1.08001 * 120.14141 * 180.28276 * 15 14 13 38 38 H 1.08002 * 119.74966 * 179.84002 * 16 15 14 39 39 H 1.09002 * 109.46567 * 178.83337 * 20 18 9 40 40 H 1.09004 * 109.46914 * 298.82933 * 20 18 9 41 41 H 0.97001 * 119.99774 * 5.38835 * 21 20 18 42 42 H 1.09001 * 109.46526 * 300.00048 * 24 22 21 43 43 H 1.08996 * 109.47076 * 60.00093 * 24 22 21 44 44 H 1.09008 * 109.47173 * 300.00122 * 26 25 24 45 45 H 1.08990 * 109.47230 * 59.99773 * 26 25 24 46 46 H 1.09000 * 115.55249 * 29.33475 * 27 26 25 47 47 H 1.09001 * 117.48967 * 0.02562 * 28 27 26 48 48 H 1.08997 * 117.50255 * 145.01999 * 28 27 26 49 49 H 1.08996 * 117.50379 * 214.97625 * 29 27 26 50 50 H 1.09006 * 117.49916 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5501 2.0161 -1.3988 5 1 1.4225 2.6671 0.6470 6 1 3.5207 1.4557 0.7517 7 6 2.0102 -1.2023 0.0005 8 1 1.5803 -2.0741 -0.4700 9 7 3.2399 -1.2827 0.5977 10 6 3.5408 -0.5412 1.8335 11 6 3.8120 -1.5606 2.9388 12 6 4.7659 -2.6250 2.4640 13 6 5.4353 -3.3676 3.4295 14 6 6.3053 -4.3729 3.0630 15 6 6.5165 -4.6454 1.7240 16 6 5.8588 -3.9051 0.7635 17 6 4.9846 -2.8911 1.1312 18 6 4.3100 -2.1106 0.0312 19 1 5.0421 -1.4696 -0.4601 20 6 3.7157 -3.0813 -0.9912 21 7 3.0406 -2.3243 -2.0482 22 6 2.3473 -2.9736 -3.0043 23 8 2.2819 -4.1846 -2.9894 24 6 1.6533 -2.1949 -4.0921 25 8 0.9913 -3.1002 -4.9778 26 6 0.2978 -2.4605 -6.0510 27 6 -0.3699 -3.5200 -6.9299 28 6 0.1066 -3.6384 -8.3790 29 6 -1.2632 -3.0302 -8.0715 30 1 -0.4850 0.8401 -0.0004 31 1 4.4214 0.0835 1.6837 32 1 2.6890 0.0818 2.1064 33 1 4.2439 -1.0499 3.7994 34 1 2.8727 -2.0282 3.2337 35 1 5.2693 -3.1585 4.4760 36 1 6.8210 -4.9452 3.8199 37 1 7.1932 -5.4345 1.4314 38 1 6.0254 -4.1158 -0.2826 39 1 4.5133 -3.6826 -1.4275 40 1 2.9970 -3.7348 -0.4966 41 1 3.0926 -1.3558 -2.0600 42 1 0.9205 -1.5223 -3.6463 43 1 2.3885 -1.6139 -4.6486 44 1 -0.4629 -1.7933 -5.6455 45 1 1.0046 -1.8850 -6.6485 46 1 -0.6632 -4.4374 -6.4197 47 1 0.8962 -2.9618 -8.7059 48 1 0.1272 -4.6339 -8.8223 49 1 -2.1438 -3.6256 -8.3125 50 1 -1.3748 -1.9531 -8.1965 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755171653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:44 Heat of formation + Delta-G solvation = 5.964162 kcal Electronic energy + Delta-G solvation = -30466.180032 eV Core-core repulsion = 26460.329267 eV Total energy + Delta-G solvation = -4005.850765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.86510 -39.06253 -38.04443 -36.62239 -36.11278 -34.21049 -32.53243 -32.15353 -30.48036 -29.37535 -28.47446 -26.81974 -25.80481 -24.30522 -22.96957 -22.51240 -22.03492 -21.04114 -20.78576 -19.89807 -19.26522 -17.15266 -16.85968 -16.29200 -16.11342 -15.98720 -15.67220 -15.45263 -15.03360 -14.72996 -14.56237 -14.31728 -14.24072 -13.80278 -13.60135 -13.28012 -13.01251 -12.83421 -12.48082 -12.40790 -12.31401 -12.13627 -11.99872 -11.86063 -11.66401 -11.43422 -11.17979 -11.07687 -10.99987 -10.76936 -10.57159 -10.52466 -10.28658 -10.14541 -9.93673 -9.65084 -9.41794 -9.18091 -8.66029 -8.46891 -8.23288 -8.17327 -6.96773 -6.16053 -3.51705 1.67366 1.70909 3.16394 3.23591 3.30025 3.37888 3.41005 3.70216 4.06242 4.25128 4.41256 4.69575 4.74517 4.78509 5.04040 5.08230 5.12921 5.22699 5.24831 5.25506 5.27621 5.34925 5.45291 5.47579 5.52218 5.55704 5.61614 5.67709 5.72276 5.74190 5.83863 5.89575 5.95778 5.98368 6.03503 6.11513 6.13144 6.20817 6.34511 6.41340 6.59016 6.63859 6.76273 6.81024 6.82511 7.06373 7.13196 7.27941 7.33855 7.83658 8.22382 8.27486 8.79343 8.90290 9.54830 10.00781 10.97012 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.003167 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.792870 B = 8838.579484 C =10815.429352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.045 3.955 3 Si 0.839 3.161 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.276 4.276 8 H 0.090 0.910 9 N -0.597 5.597 10 C 0.145 3.855 11 C -0.104 4.104 12 C -0.050 4.050 13 C -0.129 4.129 14 C -0.127 4.127 15 C -0.132 4.132 16 C -0.118 4.118 17 C -0.079 4.079 18 C 0.196 3.804 19 H 0.048 0.952 20 C 0.142 3.858 21 N -0.693 5.693 22 C 0.515 3.485 23 O -0.543 6.543 24 C 0.046 3.954 25 O -0.360 6.360 26 C 0.091 3.909 27 C -0.149 4.149 28 C -0.179 4.179 29 C -0.175 4.175 30 H 0.264 0.736 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.411 0.589 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.116 0.884 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -2.430 -5.577 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.157 4.157 3 Si 0.666 3.334 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.180 1.180 7 C -0.403 4.403 8 H 0.108 0.892 9 N -0.322 5.322 10 C 0.019 3.981 11 C -0.142 4.142 12 C -0.050 4.050 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.150 4.150 16 C -0.136 4.136 17 C -0.080 4.080 18 C 0.089 3.911 19 H 0.065 0.935 20 C 0.018 3.982 21 N -0.346 5.346 22 C 0.300 3.700 23 O -0.421 6.421 24 C -0.034 4.034 25 O -0.279 6.279 26 C 0.014 3.986 27 C -0.167 4.167 28 C -0.216 4.216 29 C -0.212 4.212 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.248 0.752 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.134 0.866 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.998 -3.393 -5.563 9.562 hybrid contribution 0.360 1.802 0.117 1.841 sum 7.358 -1.592 -5.446 9.292 Atomic orbital electron populations 1.70016 1.06125 1.26933 1.48824 1.25448 0.94800 0.97392 0.98070 0.87541 0.81746 0.85683 0.78413 1.21553 1.22203 1.17995 1.18879 0.91035 0.95704 1.34727 0.89216 1.44302 1.10357 1.53492 1.24024 1.21374 0.98880 0.92431 0.85384 1.21061 0.97815 0.96243 0.99126 1.19601 0.96210 0.96878 0.92293 1.21180 0.97932 0.96724 0.98909 1.20947 0.99288 0.98268 0.96031 1.20953 1.00665 1.00174 0.93182 1.21147 0.97013 0.95969 0.99482 1.20085 0.96911 0.96444 0.94609 1.19594 0.90323 0.91101 0.90088 0.93478 1.21251 0.96005 0.93638 0.87320 1.45859 1.51801 1.11348 1.25631 1.19971 0.79319 0.88096 0.82633 1.90664 1.61361 1.14065 1.76017 1.22203 0.97270 0.92476 0.91481 1.87973 1.68829 1.32105 1.38948 1.22029 0.94765 0.93787 0.88037 1.22121 1.03120 1.01598 0.89857 1.23059 0.97594 1.02504 0.98419 1.22970 0.94511 1.01292 1.02453 0.92591 0.94866 0.91088 0.91989 0.90362 0.86708 0.86785 0.86613 0.86205 0.92307 0.91000 0.75166 0.89520 0.91010 0.92569 0.93308 0.86631 0.88770 0.88704 0.88464 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.34 13.97 55.49 0.78 -23.57 16 2 C 0.05 1.15 4.98 -17.43 -0.09 1.06 16 3 Si 0.84 18.89 26.67 -169.99 -4.53 14.36 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -5.44 4.90 56.52 0.28 -5.16 16 7 C -0.28 -6.69 7.15 -15.06 -0.11 -6.79 16 8 H 0.09 2.43 6.11 -52.49 -0.32 2.11 16 9 N -0.60 -12.59 2.51 -166.32 -0.42 -13.01 16 10 C 0.14 2.86 4.31 -3.75 -0.02 2.84 16 11 C -0.10 -1.78 5.87 -28.04 -0.16 -1.95 16 12 C -0.05 -0.84 5.76 -104.60 -0.60 -1.44 16 13 C -0.13 -1.88 9.59 -39.43 -0.38 -2.26 16 14 C -0.13 -1.69 10.04 -39.69 -0.40 -2.09 16 15 C -0.13 -1.77 10.05 -39.68 -0.40 -2.17 16 16 C -0.12 -1.76 9.06 -39.46 -0.36 -2.11 16 17 C -0.08 -1.34 5.44 -104.56 -0.57 -1.91 16 18 C 0.20 3.57 3.06 -68.93 -0.21 3.36 16 19 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 20 C 0.14 2.63 4.12 -4.04 -0.02 2.62 16 21 N -0.69 -12.97 3.44 -60.29 -0.21 -13.18 16 22 C 0.51 10.19 7.89 -10.99 -0.09 10.10 16 23 O -0.54 -12.70 16.49 -14.36 -0.24 -12.93 16 24 C 0.05 0.76 6.42 36.01 0.23 0.99 16 25 O -0.36 -6.28 9.88 -55.14 -0.54 -6.83 16 26 C 0.09 1.20 6.22 37.16 0.23 1.43 16 27 C -0.15 -1.78 6.06 -90.62 -0.55 -2.33 16 28 C -0.18 -1.76 10.18 -26.73 -0.27 -2.03 16 29 C -0.18 -1.64 10.25 -26.73 -0.27 -1.92 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.03 0.64 7.19 -51.93 -0.37 0.27 16 32 H 0.07 1.50 5.77 -51.93 -0.30 1.21 16 33 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.11 1.44 8.05 -52.48 -0.42 1.02 16 36 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.60 6.70 -52.49 -0.35 1.25 16 39 H 0.06 0.99 6.68 -51.93 -0.35 0.64 16 40 H 0.07 1.55 7.87 -51.93 -0.41 1.14 16 41 H 0.41 7.54 7.21 -40.82 -0.29 7.24 16 42 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 45 H 0.05 0.56 7.88 -51.93 -0.41 0.15 16 46 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -30.61 395.83 -11.20 -41.81 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.98 Total: 11.98 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -4.03 Total: -4.60 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.15 Total: -49.75 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.78 Total: -19.76 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.53 Total: 14.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.61 -11.20 -41.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755171653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.772 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds