Wall clock time and date at job start Wed Apr 1 2020 02:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00109 * 2 1 4 4 H 1.48499 * 109.47100 * 267.52269 * 3 2 1 5 5 H 1.48496 * 109.47127 * 27.52671 * 3 2 1 6 6 H 1.48503 * 109.46995 * 147.52838 * 3 2 1 7 7 C 1.38820 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00012 * 30.23358 * 7 2 1 9 9 N 1.36939 * 119.99659 * 210.22961 * 7 2 1 10 10 C 1.47227 * 121.32981 * 36.63212 * 9 7 2 11 11 C 1.52795 * 107.90678 * 115.83212 * 10 9 7 12 12 C 1.50603 * 110.85075 * 47.51702 * 11 10 9 13 13 C 1.38987 * 117.62548 * 160.29300 * 12 11 10 14 14 C 1.37907 * 120.58035 * 178.88154 * 13 12 11 15 15 C 1.38263 * 119.82553 * 0.07430 * 14 13 12 16 16 C 1.37954 * 119.71888 * 0.26921 * 15 14 13 17 17 C 1.37665 * 122.85270 * 339.69535 * 12 11 10 18 18 C 1.46680 * 121.32458 * 216.65451 * 9 7 2 19 19 H 1.09007 * 109.39704 * 104.32426 * 18 9 7 20 20 C 1.52997 * 109.43641 * 344.43190 * 18 9 7 21 21 N 1.46500 * 109.47123 * 58.83132 * 20 18 9 22 22 C 1.34775 * 119.99940 * 185.38267 * 21 20 18 23 23 O 1.21285 * 119.99829 * 0.02562 * 22 21 20 24 24 C 1.50702 * 120.00081 * 180.02562 * 22 21 20 25 25 O 1.42904 * 109.47103 * 180.02562 * 24 22 21 26 26 C 1.42897 * 113.99798 * 179.97438 * 25 24 22 27 27 C 1.52998 * 109.46923 * 180.02562 * 26 25 24 28 28 C 1.53001 * 117.50177 * 243.62037 * 27 26 25 29 29 C 1.53000 * 117.49927 * 174.99684 * 27 26 25 30 30 H 0.97000 * 119.99820 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.77619 * 235.43831 * 10 9 7 32 32 H 1.08998 * 109.77491 * 356.18217 * 10 9 7 33 33 H 1.08994 * 109.20050 * 167.88375 * 11 10 9 34 34 H 1.08996 * 109.20567 * 287.23189 * 11 10 9 35 35 H 1.08005 * 119.70769 * 359.15437 * 13 12 11 36 36 H 1.07998 * 120.08542 * 180.02562 * 14 13 12 37 37 H 1.08001 * 120.14141 * 180.28276 * 15 14 13 38 38 H 1.08002 * 119.74966 * 179.84002 * 16 15 14 39 39 H 1.09002 * 109.46567 * 178.83337 * 20 18 9 40 40 H 1.09004 * 109.46914 * 298.82933 * 20 18 9 41 41 H 0.97001 * 119.99774 * 5.38835 * 21 20 18 42 42 H 1.09001 * 109.46526 * 300.00048 * 24 22 21 43 43 H 1.08996 * 109.47076 * 60.00093 * 24 22 21 44 44 H 1.09008 * 109.47173 * 300.00122 * 26 25 24 45 45 H 1.08990 * 109.47230 * 59.99773 * 26 25 24 46 46 H 1.09000 * 115.55249 * 29.33475 * 27 26 25 47 47 H 1.09001 * 117.48967 * 0.02562 * 28 27 26 48 48 H 1.08997 * 117.50255 * 145.01999 * 28 27 26 49 49 H 1.08996 * 117.50379 * 214.97625 * 29 27 26 50 50 H 1.09006 * 117.49916 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5501 2.0161 -1.3988 5 1 1.4225 2.6671 0.6470 6 1 3.5207 1.4557 0.7517 7 6 2.0102 -1.2023 0.0005 8 1 1.5803 -2.0741 -0.4700 9 7 3.2399 -1.2827 0.5977 10 6 3.5408 -0.5412 1.8335 11 6 3.8120 -1.5606 2.9388 12 6 4.7659 -2.6250 2.4640 13 6 5.4353 -3.3676 3.4295 14 6 6.3053 -4.3729 3.0630 15 6 6.5165 -4.6454 1.7240 16 6 5.8588 -3.9051 0.7635 17 6 4.9846 -2.8911 1.1312 18 6 4.3100 -2.1106 0.0312 19 1 5.0421 -1.4696 -0.4601 20 6 3.7157 -3.0813 -0.9912 21 7 3.0406 -2.3243 -2.0482 22 6 2.3473 -2.9736 -3.0043 23 8 2.2819 -4.1846 -2.9894 24 6 1.6533 -2.1949 -4.0921 25 8 0.9913 -3.1002 -4.9778 26 6 0.2978 -2.4605 -6.0510 27 6 -0.3699 -3.5200 -6.9299 28 6 0.1066 -3.6384 -8.3790 29 6 -1.2632 -3.0302 -8.0715 30 1 -0.4850 0.8401 -0.0004 31 1 4.4214 0.0835 1.6837 32 1 2.6890 0.0818 2.1064 33 1 4.2439 -1.0499 3.7994 34 1 2.8727 -2.0282 3.2337 35 1 5.2693 -3.1585 4.4760 36 1 6.8210 -4.9452 3.8199 37 1 7.1932 -5.4345 1.4314 38 1 6.0254 -4.1158 -0.2826 39 1 4.5133 -3.6826 -1.4275 40 1 2.9970 -3.7348 -0.4966 41 1 3.0926 -1.3558 -2.0600 42 1 0.9205 -1.5223 -3.6463 43 1 2.3885 -1.6139 -4.6486 44 1 -0.4629 -1.7933 -5.6455 45 1 1.0046 -1.8850 -6.6485 46 1 -0.6632 -4.4374 -6.4197 47 1 0.8962 -2.9618 -8.7059 48 1 0.1272 -4.6339 -8.8223 49 1 -2.1438 -3.6256 -8.3125 50 1 -1.3748 -1.9531 -8.1965 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755171653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:42 Heat of formation + Delta-G solvation = -10.569681 kcal Electronic energy + Delta-G solvation = -30466.896993 eV Core-core repulsion = 26460.329267 eV Total energy + Delta-G solvation = -4006.567726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.25299 -40.46478 -39.16555 -37.99614 -37.28161 -35.75163 -34.30475 -33.55056 -32.00701 -30.66324 -29.75154 -28.17660 -27.16235 -25.84874 -24.35408 -23.47237 -23.25605 -22.33977 -21.85234 -21.36841 -20.71338 -18.72132 -18.18479 -17.78665 -17.40620 -17.33159 -17.10270 -16.76403 -16.37865 -16.25641 -15.84073 -15.65013 -15.39456 -15.09234 -14.90511 -14.73910 -14.50926 -14.22790 -13.95307 -13.83606 -13.63149 -13.53486 -13.42054 -13.23828 -12.82432 -12.60896 -12.58882 -12.38648 -12.34322 -12.09918 -12.04601 -11.61998 -11.50130 -11.39529 -11.36205 -11.27120 -10.78950 -10.55063 -10.52564 -9.87506 -9.60822 -9.37565 -8.72861 -8.13868 -5.46561 0.53587 0.56341 1.42418 1.52595 1.59066 1.64823 1.94072 2.52225 2.78130 2.91597 2.96130 3.09585 3.34228 3.77737 3.90282 3.92304 3.95855 4.00235 4.05255 4.13304 4.16216 4.18262 4.28616 4.30086 4.33032 4.38374 4.45498 4.51742 4.53040 4.61413 4.68842 4.73849 4.76567 4.81162 4.87336 4.99830 5.00377 5.11779 5.18016 5.20393 5.21547 5.23945 5.37636 5.54686 5.64969 5.68937 5.86234 5.95772 6.08707 6.21706 6.31580 6.68422 6.94474 7.33257 7.64669 8.14576 9.03349 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.003167 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.792870 B = 8838.579484 C =10815.429352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.311 1.311 6 H -0.234 1.234 7 C -0.250 4.250 8 H 0.052 0.948 9 N -0.609 5.609 10 C 0.140 3.860 11 C -0.096 4.096 12 C -0.075 4.075 13 C -0.132 4.132 14 C -0.123 4.123 15 C -0.128 4.128 16 C -0.125 4.125 17 C -0.103 4.103 18 C 0.200 3.800 19 H 0.062 0.938 20 C 0.149 3.851 21 N -0.687 5.687 22 C 0.508 3.492 23 O -0.586 6.586 24 C 0.052 3.948 25 O -0.391 6.391 26 C 0.086 3.914 27 C -0.180 4.180 28 C -0.171 4.171 29 C -0.158 4.158 30 H 0.261 0.739 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.413 0.587 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.108 0.892 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.199 -2.156 -5.749 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.728 3.272 4 H -0.210 1.210 5 H -0.239 1.239 6 H -0.158 1.158 7 C -0.379 4.379 8 H 0.069 0.931 9 N -0.333 5.333 10 C 0.016 3.984 11 C -0.134 4.134 12 C -0.075 4.075 13 C -0.150 4.150 14 C -0.140 4.140 15 C -0.146 4.146 16 C -0.143 4.143 17 C -0.105 4.105 18 C 0.095 3.905 19 H 0.080 0.920 20 C 0.024 3.976 21 N -0.339 5.339 22 C 0.294 3.706 23 O -0.467 6.467 24 C -0.028 4.028 25 O -0.310 6.310 26 C 0.011 3.989 27 C -0.198 4.198 28 C -0.208 4.208 29 C -0.195 4.195 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.149 0.851 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.251 0.749 42 H 0.099 0.901 43 H 0.128 0.872 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.126 0.874 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.999 -3.106 -5.727 11.934 hybrid contribution -0.528 1.559 0.224 1.661 sum 9.472 -1.547 -5.504 11.063 Atomic orbital electron populations 1.70135 1.07935 1.27338 1.52159 1.25877 0.95025 1.00270 0.98664 0.86554 0.80933 0.81112 0.78563 1.20993 1.23914 1.15793 1.18573 0.91902 0.94209 1.33255 0.93080 1.44366 1.10140 1.54034 1.24803 1.21406 0.98404 0.93018 0.85608 1.20918 0.97478 0.95950 0.99105 1.19680 0.97191 0.97778 0.92850 1.21417 0.97573 0.96570 0.99441 1.21366 0.98320 0.97523 0.96833 1.21350 1.00175 1.00063 0.93030 1.21317 0.96788 0.95556 1.00675 1.20052 0.98297 0.97779 0.94339 1.19649 0.89558 0.90770 0.90573 0.92028 1.21205 0.95422 0.93540 0.87397 1.45840 1.51362 1.11388 1.25281 1.20613 0.78884 0.87848 0.83230 1.90628 1.62952 1.15951 1.77206 1.22171 0.97734 0.91783 0.91062 1.87942 1.69452 1.33534 1.40077 1.22256 0.95054 0.94303 0.87335 1.22095 1.05793 1.01068 0.90852 1.23169 0.98217 1.03283 0.96086 1.23084 0.94663 1.02228 0.99554 0.93004 0.93605 0.93052 0.89148 0.92460 0.84729 0.83527 0.83630 0.85119 0.90228 0.94869 0.74870 0.90087 0.87166 0.92546 0.91082 0.88750 0.87722 0.87981 0.87389 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.88 13.97 21.65 0.30 -53.57 16 2 C 0.00 0.00 4.98 84.86 0.42 0.42 16 3 Si 0.90 39.60 26.67 68.60 1.83 41.43 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.23 -9.37 4.90 99.48 0.49 -8.88 16 7 C -0.25 -12.55 7.15 84.04 0.60 -11.95 16 8 H 0.05 2.95 6.11 -2.91 -0.02 2.93 16 9 N -0.61 -25.80 2.51 -680.12 -1.71 -27.51 16 10 C 0.14 5.45 4.31 86.17 0.37 5.82 16 11 C -0.10 -3.22 5.87 29.75 0.17 -3.04 16 12 C -0.07 -2.41 5.76 -19.85 -0.11 -2.52 16 13 C -0.13 -3.46 9.59 22.37 0.21 -3.24 16 14 C -0.12 -2.77 10.04 22.20 0.22 -2.54 16 15 C -0.13 -2.98 10.05 22.21 0.22 -2.76 16 16 C -0.13 -3.46 9.06 22.35 0.20 -3.26 16 17 C -0.10 -3.40 5.44 -19.82 -0.11 -3.51 16 18 C 0.20 7.23 3.06 44.24 0.14 7.37 16 19 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 20 C 0.15 5.63 4.12 86.38 0.36 5.98 16 21 N -0.69 -26.34 3.44 -463.05 -1.59 -27.93 16 22 C 0.51 20.79 7.89 87.66 0.69 21.48 16 23 O -0.59 -28.65 16.49 15.99 0.26 -28.39 16 24 C 0.05 1.75 6.42 71.24 0.46 2.20 16 25 O -0.39 -13.97 9.88 -129.94 -1.28 -15.25 16 26 C 0.09 2.28 6.22 71.98 0.45 2.73 16 27 C -0.18 -4.31 6.06 -10.79 -0.07 -4.37 16 28 C -0.17 -3.10 10.18 30.59 0.31 -2.79 16 29 C -0.16 -2.73 10.25 30.59 0.31 -2.42 16 30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.05 1.67 7.19 -2.39 -0.02 1.65 16 32 H 0.05 2.17 5.77 -2.39 -0.01 2.16 16 33 H 0.09 2.46 8.11 -2.39 -0.02 2.44 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.13 2.91 8.05 -2.91 -0.02 2.89 16 36 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 37 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.13 3.22 6.70 -2.91 -0.02 3.20 16 39 H 0.08 2.66 6.68 -2.39 -0.02 2.64 16 40 H 0.03 1.51 7.87 -2.38 -0.02 1.49 16 41 H 0.41 15.32 7.21 -92.71 -0.67 14.65 16 42 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.07 1.52 7.88 -2.39 -0.02 1.50 16 46 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.10 1.68 8.03 -2.39 -0.02 1.66 16 48 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -70.07 395.83 2.73 -67.34 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: 0.06 Total: 40.29 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 4.86 Total: 3.60 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -3.00 Total: -109.02 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.02 Total: -43.64 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.83 Total: 41.43 kcal Total: -70.07 2.73 -67.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755171653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.768 kcal (2) G-P(sol) polarization free energy of solvation -70.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds