Wall clock time and date at job start Wed Apr 1 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99851 * 2 1 4 4 H 1.48499 * 109.46731 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46650 * 299.99712 * 3 2 1 6 6 H 1.48494 * 109.47578 * 60.00070 * 3 2 1 7 7 C 1.38806 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00361 * 195.00824 * 7 2 1 9 9 N 1.36937 * 120.00068 * 15.01674 * 7 2 1 10 10 C 1.46934 * 120.63131 * 210.31536 * 9 7 2 11 11 C 1.53188 * 108.77387 * 233.58499 * 10 9 7 12 12 C 1.53046 * 109.31207 * 305.36169 * 11 10 9 13 13 C 1.52999 * 109.45847 * 181.38778 * 12 11 10 14 14 O 1.42897 * 109.47303 * 174.74803 * 13 12 11 15 15 N 1.46498 * 109.46242 * 301.36252 * 12 11 10 16 16 C 1.34782 * 119.99519 * 294.98387 * 15 12 11 17 17 O 1.21553 * 120.00443 * 5.25559 * 16 15 12 18 18 C 1.47849 * 119.99784 * 185.25246 * 16 15 12 19 19 C 1.39577 * 120.14183 * 359.72550 * 18 16 15 20 20 C 1.37961 * 119.85245 * 179.74154 * 19 18 16 21 21 C 1.38357 * 120.14225 * 0.53391 * 20 19 18 22 22 C 1.50698 * 119.85339 * 179.75940 * 21 20 19 23 23 C 1.53008 * 117.49913 * 8.60345 * 22 21 20 24 24 C 1.53004 * 117.50211 * 299.98099 * 22 21 20 25 25 C 1.38361 * 120.29173 * 359.74380 * 21 20 19 26 26 C 1.37950 * 120.14479 * 359.97438 * 25 21 20 27 27 C 1.53042 * 109.53441 * 61.37085 * 12 11 10 28 28 C 1.46921 * 120.63156 * 30.28816 * 9 7 2 29 29 H 0.96998 * 119.99866 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.58524 * 113.79609 * 10 9 7 31 31 H 1.08997 * 109.70097 * 353.44530 * 10 9 7 32 32 H 1.08999 * 109.49411 * 185.41291 * 11 10 9 33 33 H 1.08996 * 109.49765 * 65.31583 * 11 10 9 34 34 H 1.09009 * 109.47045 * 54.74668 * 13 12 11 35 35 H 1.08997 * 109.47300 * 294.75319 * 13 12 11 36 36 H 0.96701 * 114.00359 * 180.02562 * 14 13 12 37 37 H 0.96995 * 120.00156 * 114.98613 * 15 12 11 38 38 H 1.08008 * 120.07585 * 0.02562 * 19 18 16 39 39 H 1.08001 * 119.92997 * 180.27288 * 20 19 18 40 40 H 1.09003 * 115.55041 * 154.31273 * 22 21 20 41 41 H 1.09002 * 117.49555 * 359.97438 * 23 22 21 42 42 H 1.08993 * 117.49714 * 145.01941 * 23 22 21 43 43 H 1.08994 * 117.49688 * 214.98054 * 24 22 21 44 44 H 1.09003 * 117.49632 * 359.97438 * 24 22 21 45 45 H 1.08004 * 119.92520 * 179.97438 * 25 21 20 46 46 H 1.08006 * 120.06917 * 180.02562 * 26 25 21 47 47 H 1.08996 * 109.50065 * 58.58473 * 27 12 11 48 48 H 1.09006 * 109.49292 * 178.68092 * 27 12 11 49 49 H 1.09002 * 109.59346 * 246.20417 * 28 9 7 50 50 H 1.08997 * 109.59134 * 6.63181 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0626 -1.2180 0.2427 9 7 1.3606 -2.3679 -0.3062 10 6 1.7914 -3.6426 0.2842 11 6 2.0393 -4.6494 -0.8435 12 6 0.7855 -4.7522 -1.7150 13 6 1.0173 -5.7825 -2.8221 14 8 -0.1918 -5.9685 -3.5605 15 7 -0.3501 -5.1702 -0.8892 16 6 -0.3541 -6.3907 -0.3173 17 8 0.6237 -7.1072 -0.4069 18 6 -1.5480 -6.8580 0.4191 19 6 -2.6703 -6.0354 0.5288 20 6 -3.7830 -6.4795 1.2127 21 6 -3.7840 -7.7329 1.7987 22 6 -5.0010 -8.2094 2.5489 23 6 -6.2668 -7.3545 2.4575 24 6 -5.4557 -7.3843 3.7545 25 6 -2.6726 -8.5509 1.6986 26 6 -1.5556 -8.1212 1.0125 27 6 0.4850 -3.3889 -2.3422 28 6 0.2194 -2.3678 -1.2314 29 1 -0.4850 0.8400 -0.0004 30 1 1.0124 -4.0203 0.9464 31 1 2.7111 -3.4935 0.8497 32 1 2.2662 -5.6260 -0.4159 33 1 2.8791 -4.3142 -1.4522 34 1 1.3215 -6.7305 -2.3782 35 1 1.8007 -5.4268 -3.4913 36 1 -0.1185 -6.6103 -4.2801 37 1 -1.0989 -4.5687 -0.7540 38 1 -2.6693 -5.0551 0.0752 39 1 -4.6537 -5.8458 1.2946 40 1 -5.1265 -9.2908 2.6029 41 1 -6.2190 -6.4474 1.8551 42 1 -7.2252 -7.8736 2.4513 43 1 -5.8805 -7.9230 4.6015 44 1 -4.8742 -6.4971 4.0054 45 1 -2.6796 -9.5281 2.1586 46 1 -0.6889 -8.7609 0.9348 47 1 1.3393 -3.0657 -2.9368 48 1 -0.3945 -3.4684 -2.9812 49 1 -0.6879 -2.6415 -0.6928 50 1 0.1025 -1.3757 -1.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755183092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:59 Heat of formation + Delta-G solvation = -9.175443 kcal Electronic energy + Delta-G solvation = -31026.471628 eV Core-core repulsion = 27019.964361 eV Total energy + Delta-G solvation = -4006.507268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.48158 -39.43694 -37.62083 -36.48412 -36.07565 -34.05229 -32.31300 -31.08275 -30.78489 -30.08254 -29.68673 -26.69847 -24.82040 -23.84575 -23.05872 -22.34945 -22.33006 -21.66211 -20.71861 -19.96623 -18.67185 -17.98737 -17.09394 -16.67635 -16.56238 -15.40343 -15.20127 -14.98471 -14.84049 -14.81667 -14.44691 -14.10622 -13.95679 -13.72852 -13.46972 -13.23836 -13.15471 -12.89915 -12.78836 -12.58232 -12.34699 -11.82972 -11.76363 -11.54871 -11.43730 -11.23136 -11.16884 -10.95245 -10.86376 -10.75959 -10.59878 -10.40219 -10.28425 -10.03126 -9.84820 -9.78904 -9.56799 -9.07588 -9.03193 -8.72073 -8.52710 -8.44478 -6.64224 -5.80539 -3.24896 0.84159 1.33844 2.96972 3.35923 3.44118 3.46352 3.49655 3.61798 4.00694 4.29013 4.46377 4.50020 4.57731 4.67096 4.77504 4.84711 4.89845 5.07287 5.28390 5.33706 5.37077 5.37939 5.44737 5.46739 5.53949 5.56046 5.64908 5.75735 5.76296 5.82117 5.84473 5.95082 6.00681 6.10331 6.27541 6.30116 6.32670 6.36640 6.45552 6.57634 6.59317 6.66797 6.81880 6.82697 6.95146 7.06681 7.27478 7.57236 7.79176 7.81712 7.95524 8.45282 8.57456 9.20606 9.82975 10.41339 11.28062 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011016 B = 0.003182 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.119273 B = 8796.124570 C =10379.074816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.152 3.848 11 C -0.143 4.143 12 C 0.194 3.806 13 C 0.062 3.938 14 O -0.566 6.566 15 N -0.693 5.693 16 C 0.563 3.437 17 O -0.549 6.549 18 C -0.130 4.130 19 C -0.077 4.077 20 C -0.129 4.129 21 C -0.034 4.034 22 C -0.122 4.122 23 C -0.177 4.177 24 C -0.168 4.168 25 C -0.126 4.126 26 C -0.059 4.059 27 C -0.143 4.143 28 C 0.174 3.826 29 H 0.253 0.747 30 H 0.017 0.983 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.370 0.630 37 H 0.401 0.599 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.126 0.874 46 H 0.135 0.865 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.015 0.985 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 -16.699 0.038 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.026 3.974 11 C -0.183 4.183 12 C 0.108 3.892 13 C -0.016 4.016 14 O -0.370 6.370 15 N -0.343 5.343 16 C 0.350 3.650 17 O -0.429 6.429 18 C -0.133 4.133 19 C -0.096 4.096 20 C -0.147 4.147 21 C -0.034 4.034 22 C -0.140 4.140 23 C -0.213 4.213 24 C -0.205 4.205 25 C -0.144 4.144 26 C -0.078 4.078 27 C -0.183 4.183 28 C 0.048 3.952 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.215 0.785 37 H 0.238 0.762 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.144 0.856 46 H 0.153 0.847 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.033 0.967 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.028 -16.564 0.390 18.869 hybrid contribution 0.239 0.806 -0.354 0.912 sum -8.789 -15.758 0.035 18.044 Atomic orbital electron populations 1.70012 1.05235 1.25355 1.54183 1.25094 0.95330 0.98392 1.00690 0.86227 0.79393 0.83942 0.77236 1.20267 1.21593 1.21729 1.19219 0.91945 0.84455 1.42457 0.91767 1.44042 1.35914 1.02381 1.49046 1.20802 0.97660 0.86451 0.92495 1.22383 0.95765 1.00948 0.99190 1.20304 0.86621 0.93691 0.88559 1.22748 0.86189 0.99859 0.92853 1.86484 1.35448 1.65749 1.49350 1.45868 1.22703 1.15793 1.49954 1.18131 0.86725 0.81627 0.78521 1.90649 1.34863 1.56103 1.61256 1.20075 0.94941 0.96114 1.02195 1.21370 0.92318 0.99029 0.96838 1.20968 0.98619 0.96019 0.99074 1.19298 0.93901 0.93988 0.96205 1.21079 0.93306 0.98117 1.01487 1.23090 0.94903 1.02343 1.00997 1.23048 1.03351 1.02392 0.91711 1.20875 0.92798 1.00104 1.00585 1.21216 0.98032 0.94591 0.93921 1.22471 1.01732 0.94011 1.00074 1.20723 0.88746 0.97548 0.88197 0.93725 0.96530 0.92830 0.90864 0.91613 0.91639 0.93576 0.78483 0.76235 0.85366 0.85454 0.86864 0.88109 0.88414 0.88417 0.88309 0.85608 0.84725 0.91233 0.91878 0.96696 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 11.24 55.49 0.62 -25.00 16 2 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 3 Si 0.90 21.51 29.58 -169.99 -5.03 16.49 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.82 9.57 -15.06 -0.14 -6.97 16 8 H 0.06 1.74 7.87 -52.49 -0.41 1.32 16 9 N -0.59 -14.56 2.98 -172.32 -0.51 -15.07 16 10 C 0.15 3.31 6.25 -3.71 -0.02 3.29 16 11 C -0.14 -2.68 4.74 -26.61 -0.13 -2.81 16 12 C 0.19 3.41 0.44 -131.77 -0.06 3.35 16 13 C 0.06 0.97 5.54 37.16 0.21 1.17 16 14 O -0.57 -8.26 12.94 -35.23 -0.46 -8.72 16 15 N -0.69 -11.77 3.85 -48.50 -0.19 -11.96 16 16 C 0.56 9.57 7.18 -12.32 -0.09 9.48 16 17 O -0.55 -10.32 12.66 5.32 0.07 -10.25 16 18 C -0.13 -1.92 5.87 -104.97 -0.62 -2.53 16 19 C -0.08 -1.01 9.54 -39.18 -0.37 -1.39 16 20 C -0.13 -1.48 9.28 -39.64 -0.37 -1.85 16 21 C -0.03 -0.36 5.62 -104.53 -0.59 -0.95 16 22 C -0.12 -1.03 6.04 -91.77 -0.55 -1.58 16 23 C -0.18 -1.31 9.86 -26.72 -0.26 -1.58 16 24 C -0.17 -1.30 10.16 -26.73 -0.27 -1.57 16 25 C -0.13 -1.39 9.72 -39.64 -0.39 -1.77 16 26 C -0.06 -0.77 9.59 -39.19 -0.38 -1.15 16 27 C -0.14 -2.71 4.89 -26.61 -0.13 -2.84 16 28 C 0.17 3.98 5.00 -3.71 -0.02 3.96 16 29 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 31 H 0.05 1.16 7.94 -51.93 -0.41 0.75 16 32 H 0.07 1.38 6.40 -51.93 -0.33 1.05 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.08 6.17 -51.92 -0.32 0.76 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.37 3.70 9.12 45.56 0.42 4.11 16 37 H 0.40 6.68 5.18 -40.82 -0.21 6.47 16 38 H 0.13 1.62 6.42 -52.48 -0.34 1.29 16 39 H 0.13 1.23 6.00 -52.49 -0.31 0.92 16 40 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.76 6.16 -51.93 -0.32 0.44 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 46 H 0.13 1.73 7.65 -52.48 -0.40 1.33 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.06 1.13 7.80 -51.93 -0.40 0.73 16 49 H 0.02 0.35 6.84 -51.93 -0.36 0.00 16 50 H 0.09 2.27 6.17 -51.93 -0.32 1.95 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -31.54 389.62 -10.53 -42.08 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.65 Total: 12.28 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -4.26 Total: -5.72 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.08 Total: -52.03 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.39 Total: -18.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.54 -10.53 -42.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755183092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.901 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds