Wall clock time and date at job start Wed Apr 1 2020 02:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99851 * 2 1 4 4 H 1.48499 * 109.46731 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46650 * 299.99712 * 3 2 1 6 6 H 1.48494 * 109.47578 * 60.00070 * 3 2 1 7 7 C 1.38806 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00361 * 195.00824 * 7 2 1 9 9 N 1.36937 * 120.00068 * 15.01674 * 7 2 1 10 10 C 1.46934 * 120.63131 * 210.31536 * 9 7 2 11 11 C 1.53188 * 108.77387 * 233.58499 * 10 9 7 12 12 C 1.53046 * 109.31207 * 305.36169 * 11 10 9 13 13 C 1.52999 * 109.45847 * 181.38778 * 12 11 10 14 14 O 1.42897 * 109.47303 * 174.74803 * 13 12 11 15 15 N 1.46498 * 109.46242 * 301.36252 * 12 11 10 16 16 C 1.34782 * 119.99519 * 294.98387 * 15 12 11 17 17 O 1.21553 * 120.00443 * 5.25559 * 16 15 12 18 18 C 1.47849 * 119.99784 * 185.25246 * 16 15 12 19 19 C 1.39577 * 120.14183 * 359.72550 * 18 16 15 20 20 C 1.37961 * 119.85245 * 179.74154 * 19 18 16 21 21 C 1.38357 * 120.14225 * 0.53391 * 20 19 18 22 22 C 1.50698 * 119.85339 * 179.75940 * 21 20 19 23 23 C 1.53008 * 117.49913 * 8.60345 * 22 21 20 24 24 C 1.53004 * 117.50211 * 299.98099 * 22 21 20 25 25 C 1.38361 * 120.29173 * 359.74380 * 21 20 19 26 26 C 1.37950 * 120.14479 * 359.97438 * 25 21 20 27 27 C 1.53042 * 109.53441 * 61.37085 * 12 11 10 28 28 C 1.46921 * 120.63156 * 30.28816 * 9 7 2 29 29 H 0.96998 * 119.99866 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.58524 * 113.79609 * 10 9 7 31 31 H 1.08997 * 109.70097 * 353.44530 * 10 9 7 32 32 H 1.08999 * 109.49411 * 185.41291 * 11 10 9 33 33 H 1.08996 * 109.49765 * 65.31583 * 11 10 9 34 34 H 1.09009 * 109.47045 * 54.74668 * 13 12 11 35 35 H 1.08997 * 109.47300 * 294.75319 * 13 12 11 36 36 H 0.96701 * 114.00359 * 180.02562 * 14 13 12 37 37 H 0.96995 * 120.00156 * 114.98613 * 15 12 11 38 38 H 1.08008 * 120.07585 * 0.02562 * 19 18 16 39 39 H 1.08001 * 119.92997 * 180.27288 * 20 19 18 40 40 H 1.09003 * 115.55041 * 154.31273 * 22 21 20 41 41 H 1.09002 * 117.49555 * 359.97438 * 23 22 21 42 42 H 1.08993 * 117.49714 * 145.01941 * 23 22 21 43 43 H 1.08994 * 117.49688 * 214.98054 * 24 22 21 44 44 H 1.09003 * 117.49632 * 359.97438 * 24 22 21 45 45 H 1.08004 * 119.92520 * 179.97438 * 25 21 20 46 46 H 1.08006 * 120.06917 * 180.02562 * 26 25 21 47 47 H 1.08996 * 109.50065 * 58.58473 * 27 12 11 48 48 H 1.09006 * 109.49292 * 178.68092 * 27 12 11 49 49 H 1.09002 * 109.59346 * 246.20417 * 28 9 7 50 50 H 1.08997 * 109.59134 * 6.63181 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0626 -1.2180 0.2427 9 7 1.3606 -2.3679 -0.3062 10 6 1.7914 -3.6426 0.2842 11 6 2.0393 -4.6494 -0.8435 12 6 0.7855 -4.7522 -1.7150 13 6 1.0173 -5.7825 -2.8221 14 8 -0.1918 -5.9685 -3.5605 15 7 -0.3501 -5.1702 -0.8892 16 6 -0.3541 -6.3907 -0.3173 17 8 0.6237 -7.1072 -0.4069 18 6 -1.5480 -6.8580 0.4191 19 6 -2.6703 -6.0354 0.5288 20 6 -3.7830 -6.4795 1.2127 21 6 -3.7840 -7.7329 1.7987 22 6 -5.0010 -8.2094 2.5489 23 6 -6.2668 -7.3545 2.4575 24 6 -5.4557 -7.3843 3.7545 25 6 -2.6726 -8.5509 1.6986 26 6 -1.5556 -8.1212 1.0125 27 6 0.4850 -3.3889 -2.3422 28 6 0.2194 -2.3678 -1.2314 29 1 -0.4850 0.8400 -0.0004 30 1 1.0124 -4.0203 0.9464 31 1 2.7111 -3.4935 0.8497 32 1 2.2662 -5.6260 -0.4159 33 1 2.8791 -4.3142 -1.4522 34 1 1.3215 -6.7305 -2.3782 35 1 1.8007 -5.4268 -3.4913 36 1 -0.1185 -6.6103 -4.2801 37 1 -1.0989 -4.5687 -0.7540 38 1 -2.6693 -5.0551 0.0752 39 1 -4.6537 -5.8458 1.2946 40 1 -5.1265 -9.2908 2.6029 41 1 -6.2190 -6.4474 1.8551 42 1 -7.2252 -7.8736 2.4513 43 1 -5.8805 -7.9230 4.6015 44 1 -4.8742 -6.4971 4.0054 45 1 -2.6796 -9.5281 2.1586 46 1 -0.6889 -8.7609 0.9348 47 1 1.3393 -3.0657 -2.9368 48 1 -0.3945 -3.4684 -2.9812 49 1 -0.6879 -2.6415 -0.6928 50 1 0.1025 -1.3757 -1.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755183092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:58 Heat of formation + Delta-G solvation = -28.161198 kcal Electronic energy + Delta-G solvation = -31027.294912 eV Core-core repulsion = 27019.964361 eV Total energy + Delta-G solvation = -4007.330552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.75427 -40.46144 -38.93164 -37.51851 -37.29800 -35.65999 -33.87948 -32.54991 -31.78450 -31.72049 -31.06061 -28.37632 -25.81626 -25.61585 -24.01357 -23.89059 -23.04366 -22.91361 -22.16319 -21.00390 -20.16373 -19.24904 -18.66043 -18.11960 -17.42017 -16.85332 -16.55653 -16.33617 -16.05004 -15.98586 -15.72155 -15.47184 -15.27717 -15.08483 -14.90922 -14.64986 -14.41023 -14.25026 -14.04998 -13.71747 -13.60528 -13.28353 -13.20701 -13.02104 -12.65177 -12.60037 -12.48742 -12.29386 -12.22460 -12.01543 -12.00864 -11.83953 -11.59536 -11.46618 -11.37035 -11.23380 -11.08179 -10.57289 -10.44053 -9.98942 -9.97704 -9.52341 -8.65214 -7.88132 -5.35844 -0.16956 0.39235 1.45947 1.48264 1.58387 1.86011 2.20365 2.50623 2.75347 3.15722 3.24727 3.30264 3.52808 3.67442 3.70033 3.81590 3.94642 3.97574 3.98831 4.03990 4.14306 4.24698 4.30123 4.39913 4.42751 4.51745 4.56247 4.63269 4.68898 4.70676 4.79539 4.82727 4.88795 4.97664 4.99080 5.05929 5.09195 5.15539 5.17899 5.24451 5.27564 5.35359 5.40157 5.42584 5.57779 5.62466 5.64507 5.70430 5.90657 6.39636 6.61130 6.88949 7.15074 7.25127 7.83246 8.37427 9.18079 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011016 B = 0.003182 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.119273 B = 8796.124570 C =10379.074816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.044 4.044 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.265 4.265 8 H 0.062 0.938 9 N -0.605 5.605 10 C 0.154 3.846 11 C -0.130 4.130 12 C 0.193 3.807 13 C 0.074 3.926 14 O -0.577 6.577 15 N -0.694 5.694 16 C 0.560 3.440 17 O -0.571 6.571 18 C -0.156 4.156 19 C -0.086 4.086 20 C -0.133 4.133 21 C -0.028 4.028 22 C -0.131 4.131 23 C -0.172 4.172 24 C -0.167 4.167 25 C -0.123 4.123 26 C -0.067 4.067 27 C -0.126 4.126 28 C 0.183 3.817 29 H 0.251 0.749 30 H 0.005 0.995 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.392 0.608 37 H 0.401 0.599 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.154 0.846 46 H 0.132 0.868 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.004 0.996 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.358 -18.032 0.000 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.240 4.240 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.395 4.395 8 H 0.080 0.920 9 N -0.328 5.328 10 C 0.029 3.971 11 C -0.170 4.170 12 C 0.107 3.893 13 C -0.005 4.005 14 O -0.384 6.384 15 N -0.344 5.344 16 C 0.349 3.651 17 O -0.453 6.453 18 C -0.159 4.159 19 C -0.104 4.104 20 C -0.151 4.151 21 C -0.029 4.029 22 C -0.149 4.149 23 C -0.209 4.209 24 C -0.204 4.204 25 C -0.140 4.140 26 C -0.086 4.086 27 C -0.166 4.166 28 C 0.057 3.943 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.240 0.760 37 H 0.237 0.763 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.105 0.895 45 H 0.172 0.828 46 H 0.150 0.850 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.022 0.978 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.965 -17.926 0.333 20.512 hybrid contribution 0.448 1.169 -0.271 1.281 sum -9.517 -16.756 0.062 19.270 Atomic orbital electron populations 1.70149 1.06460 1.25802 1.55147 1.25802 0.96114 1.01283 1.00806 0.85232 0.78556 0.79964 0.76810 1.19392 1.21474 1.21948 1.19485 0.92119 0.85658 1.42262 0.92045 1.44244 1.36140 1.02662 1.49780 1.20811 0.96829 0.86087 0.93398 1.22205 0.96729 0.99727 0.98339 1.20261 0.86195 0.93706 0.89183 1.22499 0.86916 0.98581 0.92507 1.86426 1.34973 1.66767 1.50228 1.45860 1.22462 1.15989 1.50087 1.18491 0.87204 0.81178 0.78182 1.90620 1.35867 1.56604 1.62246 1.20012 0.94680 0.97355 1.03843 1.21422 0.92654 0.98907 0.97452 1.21204 0.98528 0.96766 0.98603 1.19635 0.94705 0.93384 0.95148 1.21173 0.92672 0.99239 1.01772 1.23192 0.95195 1.02050 1.00465 1.23100 1.03166 1.01903 0.92259 1.21171 0.91919 1.01243 0.99703 1.21317 0.98878 0.94059 0.94325 1.22236 1.02209 0.93506 0.98607 1.20528 0.87939 0.97017 0.88786 0.94032 0.97754 0.93321 0.90786 0.91059 0.92448 0.91906 0.75953 0.76281 0.85655 0.83835 0.85079 0.88445 0.86693 0.86735 0.89502 0.82828 0.84981 0.91177 0.90703 0.97847 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.87 11.24 21.65 0.24 -53.63 16 2 C -0.04 -2.44 4.95 84.86 0.42 -2.02 16 3 Si 0.97 44.67 29.58 68.60 2.03 46.70 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.27 -14.62 9.57 84.03 0.80 -13.82 16 8 H 0.06 3.36 7.87 -2.91 -0.02 3.33 16 9 N -0.60 -30.41 2.98 -699.11 -2.09 -32.50 16 10 C 0.15 6.85 6.25 86.36 0.54 7.39 16 11 C -0.13 -4.88 4.74 30.67 0.15 -4.73 16 12 C 0.19 6.70 0.44 3.63 0.00 6.70 16 13 C 0.07 2.20 5.54 71.98 0.40 2.59 16 14 O -0.58 -15.83 12.94 -148.98 -1.93 -17.76 16 15 N -0.69 -23.86 3.85 -425.62 -1.64 -25.50 16 16 C 0.56 19.32 7.18 86.79 0.62 19.95 16 17 O -0.57 -21.67 12.66 -3.88 -0.05 -21.72 16 18 C -0.16 -4.64 5.87 -20.09 -0.12 -4.76 16 19 C -0.09 -2.28 9.54 22.53 0.21 -2.06 16 20 C -0.13 -2.94 9.28 22.23 0.21 -2.73 16 21 C -0.03 -0.56 5.62 -19.81 -0.11 -0.67 16 22 C -0.13 -1.85 6.04 -11.54 -0.07 -1.92 16 23 C -0.17 -2.11 9.86 30.60 0.30 -1.81 16 24 C -0.17 -2.19 10.16 30.60 0.31 -1.88 16 25 C -0.12 -2.50 9.72 22.23 0.22 -2.28 16 26 C -0.07 -1.73 9.59 22.52 0.22 -1.52 16 27 C -0.13 -4.74 4.89 30.67 0.15 -4.59 16 28 C 0.18 8.57 5.00 86.36 0.43 9.00 16 29 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.00 0.21 7.74 -2.39 -0.02 0.19 16 31 H 0.05 2.16 7.94 -2.39 -0.02 2.14 16 32 H 0.07 2.79 6.40 -2.39 -0.02 2.78 16 33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.06 1.84 6.17 -2.38 -0.01 1.82 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.39 6.96 9.12 -74.06 -0.68 6.29 16 37 H 0.40 13.72 5.18 -92.71 -0.48 13.24 16 38 H 0.13 3.29 6.42 -2.91 -0.02 3.27 16 39 H 0.14 2.61 6.00 -2.91 -0.02 2.59 16 40 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 1.26 6.16 -2.39 -0.01 1.24 16 42 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 46 H 0.13 3.41 7.65 -2.91 -0.02 3.39 16 47 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 48 H 0.07 2.64 7.80 -2.38 -0.02 2.62 16 49 H 0.00 0.17 6.84 -2.39 -0.02 0.16 16 50 H 0.06 2.99 6.17 -2.39 -0.01 2.98 16 Total: -1.00 -68.07 389.62 1.08 -66.99 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -0.18 Total: 36.55 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 4.68 Total: 0.86 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -3.48 Total: -111.62 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.98 Total: -39.48 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.07 1.08 -66.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755183092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.832 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds