Wall clock time and date at job start Wed Apr 1 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48499 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47132 * 300.00698 * 3 2 1 6 6 H 1.48506 * 109.47059 * 60.00080 * 3 2 1 7 7 C 1.38809 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00123 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.49455 * 180.02562 * 9 7 2 11 11 C 1.53949 * 86.11511 * 155.35558 * 10 9 7 12 12 C 1.52995 * 113.73777 * 269.14925 * 11 10 9 13 13 C 1.53004 * 109.47078 * 172.60232 * 12 11 10 14 14 O 1.42896 * 109.47519 * 175.18839 * 13 12 11 15 15 N 1.46504 * 113.73720 * 137.95312 * 11 10 9 16 16 C 1.34771 * 119.99870 * 74.92378 * 15 11 10 17 17 O 1.21555 * 120.00493 * 355.01767 * 16 15 11 18 18 C 1.47854 * 119.99862 * 175.01999 * 16 15 11 19 19 C 1.39573 * 120.14315 * 179.97438 * 18 16 15 20 20 C 1.37962 * 119.85151 * 179.72421 * 19 18 16 21 21 C 1.38365 * 120.14209 * 0.27833 * 20 19 18 22 22 C 1.50693 * 119.85147 * 179.97438 * 21 20 19 23 23 C 1.53783 * 113.61516 * 217.49389 * 22 21 20 24 24 C 1.53777 * 87.08104 * 220.02039 * 23 22 21 25 25 C 1.53775 * 87.08621 * 25.43077 * 24 23 22 26 26 C 1.38359 * 120.29271 * 359.97438 * 21 20 19 27 27 C 1.37957 * 120.14741 * 0.02603 * 26 21 20 28 28 C 1.47809 * 134.45506 * 359.86380 * 9 7 2 29 29 H 0.97007 * 120.00264 * 359.97438 * 1 2 3 30 30 H 1.08994 * 113.76890 * 41.04942 * 10 9 7 31 31 H 1.09001 * 113.86790 * 269.66720 * 10 9 7 32 32 H 1.08999 * 109.47945 * 292.59885 * 12 11 10 33 33 H 1.08998 * 109.47339 * 52.60476 * 12 11 10 34 34 H 1.09003 * 109.46778 * 295.19138 * 13 12 11 35 35 H 1.09004 * 109.46907 * 55.18449 * 13 12 11 36 36 H 0.96701 * 114.00420 * 180.02562 * 14 13 12 37 37 H 0.96997 * 119.99922 * 254.91396 * 15 11 10 38 38 H 1.07997 * 120.07874 * 359.97438 * 19 18 16 39 39 H 1.07994 * 119.92624 * 180.30143 * 20 19 18 40 40 H 1.08997 * 112.85158 * 348.80406 * 22 21 20 41 41 H 1.08992 * 113.61212 * 334.56939 * 23 22 21 42 42 H 1.08998 * 113.61200 * 105.46868 * 23 22 21 43 43 H 1.09010 * 113.61603 * 270.88019 * 24 23 22 44 44 H 1.09001 * 113.61547 * 139.98736 * 24 23 22 45 45 H 1.09001 * 113.61841 * 220.01898 * 25 24 23 46 46 H 1.08999 * 113.69023 * 89.12280 * 25 24 23 47 47 H 1.08000 * 119.92220 * 180.02562 * 26 21 20 48 48 H 1.07998 * 120.07680 * 179.97438 * 27 26 21 49 49 H 1.09004 * 113.76736 * 90.37959 * 28 9 7 50 50 H 1.08997 * 113.84000 * 318.92550 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3470 -4.0829 0.6399 12 6 0.3647 -4.0562 2.1695 13 6 -1.0680 -4.1533 2.6979 14 8 -1.0449 -4.2412 4.1240 15 7 -0.3333 -5.2614 0.0970 16 6 0.0804 -6.4968 0.4419 17 8 1.0727 -6.6355 1.1301 18 6 -0.6728 -7.6835 -0.0169 19 6 -0.2467 -8.9643 0.3380 20 6 -0.9573 -10.0672 -0.0886 21 6 -2.0867 -9.9058 -0.8715 22 6 -2.8576 -11.1151 -1.3343 23 6 -3.4123 -10.9825 -2.7625 24 6 -4.6870 -11.6710 -2.2470 25 6 -4.3182 -11.1359 -0.8534 26 6 -2.5114 -8.6391 -1.2312 27 6 -1.8099 -7.5279 -0.8112 28 6 -0.1057 -2.7571 0.0024 29 1 -0.4851 0.8401 0.0004 30 1 2.5624 -4.0323 0.6545 31 1 1.8325 -4.2367 -0.9973 32 1 0.9467 -4.8996 2.5411 33 1 0.8157 -3.1247 2.5115 34 1 -1.6268 -3.2669 2.3975 35 1 -1.5474 -5.0417 2.2867 36 1 -1.9209 -4.3060 4.5283 37 1 -1.0816 -5.1524 -0.5105 38 1 0.6349 -9.0917 0.9487 39 1 -0.6315 -11.0586 0.1894 40 1 -2.3260 -12.0498 -1.1560 41 1 -3.5696 -9.9505 -3.0757 42 1 -2.8658 -11.5709 -3.4995 43 1 -4.6560 -12.7582 -2.3196 44 1 -5.6064 -11.2452 -2.6491 45 1 -4.5030 -11.8480 -0.0491 46 1 -4.7227 -10.1458 -0.6433 47 1 -3.3940 -8.5201 -1.8421 48 1 -2.1422 -6.5397 -1.0930 49 1 -0.5319 -2.8717 -0.9943 50 1 -0.7184 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755334319.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:26 Heat of formation + Delta-G solvation = 13.390135 kcal Electronic energy + Delta-G solvation = -30078.455392 eV Core-core repulsion = 26072.926641 eV Total energy + Delta-G solvation = -4005.528751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.58002 -39.80550 -38.30166 -37.14936 -36.34977 -33.75459 -32.25285 -31.26830 -31.04506 -30.15059 -27.18429 -26.14928 -25.98740 -25.05857 -23.60424 -22.88113 -22.63731 -21.56058 -20.32173 -19.42565 -18.73711 -17.88968 -17.03601 -16.79892 -16.56644 -15.76861 -15.45534 -15.21917 -14.92586 -14.75754 -14.59428 -14.35869 -13.99213 -13.77232 -13.63704 -13.59953 -13.34106 -13.13798 -12.82581 -12.54115 -12.24844 -12.11017 -11.86116 -11.72929 -11.52409 -11.35044 -11.06074 -10.94509 -10.92290 -10.80001 -10.78257 -10.68406 -10.57520 -10.14523 -9.99181 -9.70078 -9.58788 -9.19741 -9.14457 -8.91464 -8.84493 -8.53658 -6.93827 -5.81533 -3.13227 0.75563 1.22152 2.93986 3.36789 3.40928 3.45675 3.47219 3.81322 4.21189 4.25111 4.35137 4.44747 4.49865 4.57621 4.64151 4.75119 4.76699 4.94909 5.15114 5.18951 5.22238 5.25693 5.32107 5.36508 5.43198 5.47744 5.53476 5.56994 5.57975 5.64538 5.75623 5.77424 5.82496 5.84974 5.97394 6.02833 6.16093 6.27482 6.32967 6.39264 6.48370 6.50344 6.64104 6.72935 6.79935 6.84683 7.10503 7.30455 7.47327 7.83675 7.92501 7.93417 8.52082 9.00664 9.66656 10.52848 11.36276 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.002313 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.189788 B =12104.671501 C =12547.144217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.218 4.218 8 H 0.083 0.917 9 N -0.604 5.604 10 C 0.124 3.876 11 C 0.125 3.875 12 C -0.097 4.097 13 C 0.083 3.917 14 O -0.574 6.574 15 N -0.711 5.711 16 C 0.554 3.446 17 O -0.531 6.531 18 C -0.131 4.131 19 C -0.059 4.059 20 C -0.126 4.126 21 C -0.052 4.052 22 C -0.077 4.077 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.084 4.084 28 C 0.166 3.834 29 H 0.253 0.747 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.035 0.965 36 H 0.371 0.629 37 H 0.396 0.604 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.126 0.874 48 H 0.127 0.873 49 H 0.030 0.970 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.717 -22.900 -2.675 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.345 4.345 8 H 0.101 0.899 9 N -0.331 5.331 10 C -0.003 4.003 11 C 0.039 3.961 12 C -0.135 4.135 13 C 0.005 3.995 14 O -0.379 6.379 15 N -0.362 5.362 16 C 0.340 3.660 17 O -0.409 6.409 18 C -0.135 4.135 19 C -0.078 4.078 20 C -0.144 4.144 21 C -0.053 4.053 22 C -0.096 4.096 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.168 4.168 26 C -0.143 4.143 27 C -0.103 4.103 28 C 0.040 3.960 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.217 0.783 37 H 0.231 0.769 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.144 0.856 48 H 0.145 0.855 49 H 0.048 0.952 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.298 -22.562 -2.273 24.905 hybrid contribution -0.582 0.950 -0.499 1.220 sum -10.879 -21.612 -2.772 24.354 Atomic orbital electron populations 1.69793 1.05015 1.25330 1.56873 1.24774 0.95727 0.97565 1.02354 0.86017 0.78824 0.83533 0.77233 1.20395 1.21771 1.21639 1.19054 0.90351 0.81497 1.43607 0.89917 1.45705 1.01843 0.99521 1.86031 1.22862 0.94757 0.85702 0.96975 1.22966 0.95430 0.84283 0.93416 1.21338 0.95670 1.04487 0.92007 1.22123 0.98357 0.99000 0.80000 1.86496 1.33447 1.97275 1.20637 1.46146 1.36020 1.05422 1.48606 1.18278 0.84292 0.83095 0.80299 1.90749 1.25540 1.86217 1.38370 1.20139 0.97392 0.94248 1.01683 1.21289 0.98842 0.90862 0.96780 1.21019 0.95528 0.98779 0.99094 1.19908 0.94836 0.94401 0.96122 1.21607 0.94933 0.96180 0.96848 1.23049 0.96849 1.01618 0.95706 1.22843 0.98128 1.00447 0.96719 1.22988 0.94720 1.01964 0.97161 1.20898 1.00496 0.91684 1.01270 1.21337 0.94029 0.99115 0.95808 1.22581 0.89045 0.87463 0.96901 0.93649 0.93011 0.94596 0.90166 0.89225 0.93355 0.94659 0.78326 0.76915 0.84666 0.85653 0.88406 0.89521 0.91245 0.90149 0.91277 0.91281 0.89716 0.85586 0.85488 0.95217 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 11.39 55.49 0.63 -26.05 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.22 -6.09 10.70 -15.06 -0.16 -6.25 16 8 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 9 N -0.60 -15.45 3.55 -177.51 -0.63 -16.08 16 10 C 0.12 2.72 8.04 -2.96 -0.02 2.70 16 11 C 0.13 2.41 0.68 -134.04 -0.09 2.32 16 12 C -0.10 -1.91 4.66 -26.73 -0.12 -2.04 16 13 C 0.08 1.40 6.86 37.16 0.25 1.65 16 14 O -0.57 -9.47 13.66 -35.23 -0.48 -9.95 16 15 N -0.71 -11.06 4.47 -50.01 -0.22 -11.28 16 16 C 0.55 8.90 7.32 -12.33 -0.09 8.81 16 17 O -0.53 -10.35 14.53 5.32 0.08 -10.27 16 18 C -0.13 -1.70 5.87 -104.96 -0.62 -2.32 16 19 C -0.06 -0.71 9.60 -39.18 -0.38 -1.08 16 20 C -0.13 -1.22 9.69 -39.64 -0.38 -1.60 16 21 C -0.05 -0.46 5.30 -104.53 -0.55 -1.02 16 22 C -0.08 -0.52 3.98 -90.96 -0.36 -0.88 16 23 C -0.13 -0.81 7.45 -25.92 -0.19 -1.01 16 24 C -0.14 -0.76 8.08 -25.92 -0.21 -0.97 16 25 C -0.13 -0.79 7.55 -25.92 -0.20 -0.99 16 26 C -0.13 -1.12 8.58 -39.64 -0.34 -1.46 16 27 C -0.08 -0.88 9.54 -39.18 -0.37 -1.25 16 28 C 0.17 3.73 6.69 -2.85 -0.02 3.71 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.68 6.54 -51.93 -0.34 1.34 16 33 H 0.09 2.03 8.02 -51.93 -0.42 1.61 16 34 H 0.05 0.82 7.61 -51.93 -0.40 0.42 16 35 H 0.04 0.55 7.42 -51.93 -0.39 0.16 16 36 H 0.37 4.10 9.12 45.56 0.42 4.52 16 37 H 0.40 5.08 6.72 -40.82 -0.27 4.80 16 38 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 39 H 0.13 0.94 8.05 -52.49 -0.42 0.52 16 40 H 0.10 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.09 0.52 6.30 -51.93 -0.33 0.20 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.54 7.72 -51.93 -0.40 0.14 16 47 H 0.13 0.88 6.64 -52.49 -0.35 0.53 16 48 H 0.13 1.10 6.42 -52.49 -0.34 0.77 16 49 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 2.02 6.60 -51.93 -0.34 1.68 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -33.62 400.53 -10.47 -44.08 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.90 Total: 8.41 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -3.96 Total: -1.99 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.22 Total: -53.42 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.40 Total: -20.23 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.62 -10.47 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755334319.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.473 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds