Wall clock time and date at job start Wed Apr 1 2020 03:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48501 * 109.47277 * 270.00852 * 3 2 1 5 5 H 1.48512 * 109.46759 * 30.00562 * 3 2 1 6 6 H 1.48498 * 109.47019 * 150.00214 * 3 2 1 7 7 C 1.37877 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99574 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00271 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.64463 * 298.31447 * 9 7 2 11 11 C 1.55164 * 110.72123 * 174.97899 * 9 7 2 12 12 C 1.55129 * 101.48513 * 205.97338 * 11 9 7 13 13 N 1.47416 * 104.72671 * 37.29447 * 12 11 9 14 14 C 1.34779 * 125.65176 * 155.82136 * 13 12 11 15 15 O 1.21583 * 119.99945 * 179.69109 * 14 13 12 16 16 N 1.34776 * 119.99477 * 359.68817 * 14 13 12 17 17 C 1.46498 * 119.99457 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46784 * 180.02562 * 17 16 14 19 19 H 1.08992 * 115.55493 * 29.32803 * 18 17 16 20 20 C 1.53006 * 117.51468 * 243.62537 * 18 17 16 21 21 C 1.52999 * 60.00089 * 252.52084 * 20 18 17 22 22 H 1.09002 * 117.49803 * 107.49109 * 21 20 18 23 23 C 1.53005 * 117.51737 * 252.51928 * 21 20 18 24 24 C 1.50695 * 109.46979 * 243.71782 * 23 21 20 25 25 C 1.38238 * 119.99819 * 269.72626 * 24 23 21 26 26 C 1.38240 * 119.99881 * 179.76757 * 25 24 23 27 27 C 1.38241 * 119.99839 * 0.48685 * 26 25 24 28 28 C 1.38241 * 120.00001 * 359.79146 * 27 26 25 29 29 C 1.38235 * 120.00052 * 90.00291 * 24 23 21 30 30 C 1.47026 * 108.70467 * 335.55099 * 13 12 11 31 31 H 0.97001 * 120.00041 * 359.97438 * 1 2 3 32 32 H 0.96706 * 113.99874 * 61.68382 * 10 9 7 33 33 H 1.08996 * 111.00156 * 324.20884 * 11 9 7 34 34 H 1.08997 * 111.00106 * 88.02171 * 11 9 7 35 35 H 1.09009 * 110.49095 * 278.45110 * 12 11 9 36 36 H 1.08990 * 110.34346 * 156.06150 * 12 11 9 37 37 H 0.96994 * 120.00365 * 0.02562 * 16 14 13 38 38 H 1.08997 * 109.47368 * 59.99989 * 17 16 14 39 39 H 1.08999 * 109.47654 * 299.99841 * 17 16 14 40 40 H 1.09003 * 117.49619 * 145.02781 * 20 18 17 41 41 H 1.08995 * 117.50015 * 0.02562 * 20 18 17 42 42 H 1.08998 * 109.46915 * 3.72051 * 23 21 20 43 43 H 1.09001 * 109.46560 * 123.71648 * 23 21 20 44 44 H 1.07992 * 120.00190 * 359.97438 * 25 24 23 45 45 H 1.08000 * 119.99898 * 180.25164 * 26 25 24 46 46 H 1.07992 * 119.99755 * 179.76395 * 27 26 25 47 47 H 1.07995 * 119.99918 * 179.97438 * 28 27 26 48 48 H 1.08003 * 120.00139 * 0.02562 * 29 24 23 49 49 H 1.09004 * 109.88406 * 120.70202 * 30 13 12 50 50 H 1.08994 * 109.88849 * 241.87306 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4503 -2.6186 1.1770 11 6 2.2285 -3.6974 -0.1282 12 6 1.3160 -4.7728 -0.7743 13 7 0.4642 -4.0246 -1.7165 14 6 -0.1420 -4.5381 -2.8052 15 8 -0.8291 -3.8255 -3.5113 16 7 0.0134 -5.8414 -3.1112 17 6 -0.6451 -6.3994 -4.2949 18 6 -0.3084 -7.8873 -4.4120 19 1 -0.1160 -8.4013 -3.4703 20 6 0.4886 -8.3374 -5.6381 21 6 -0.9976 -8.6823 -5.5228 22 1 -1.6906 -8.1453 -6.1704 23 6 -1.3645 -10.1379 -5.2265 24 6 -2.1357 -10.7081 -6.3888 25 6 -3.5146 -10.6139 -6.4163 26 6 -4.2216 -11.1327 -7.4849 27 6 -3.5505 -11.7547 -8.5212 28 6 -2.1720 -11.8540 -8.4909 29 6 -1.4646 -11.3304 -7.4248 30 6 0.3802 -2.6269 -1.2683 31 1 -0.4850 0.8400 0.0004 32 1 -0.2278 -1.9344 1.2626 33 1 3.0672 -3.4498 -0.7788 34 1 2.5792 -4.0215 0.8516 35 1 0.7045 -5.2605 -0.0150 36 1 1.9172 -5.5085 -1.3084 37 1 0.5613 -6.4099 -2.5478 38 1 -0.2961 -5.8764 -5.1853 39 1 -1.7242 -6.2777 -4.2017 40 1 1.2053 -9.1475 -5.5029 41 1 0.7735 -7.5734 -6.3614 42 1 -0.4545 -10.7182 -5.0744 43 1 -1.9782 -10.1818 -4.3267 44 1 -4.0392 -10.1320 -5.6046 45 1 -5.2986 -11.0555 -7.5083 46 1 -4.1032 -12.1633 -9.3541 47 1 -1.6478 -12.3402 -9.3002 48 1 -0.3877 -11.4084 -7.4010 49 1 0.7592 -1.9645 -2.0466 50 1 -0.6539 -2.3740 -1.0346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772441924.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:05 Heat of formation + Delta-G solvation = -53.852919 kcal Electronic energy + Delta-G solvation = -28829.029881 eV Core-core repulsion = 24820.585253 eV Total energy + Delta-G solvation = -4008.444628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.29426 -40.30023 -39.32669 -38.59709 -36.06964 -35.41291 -34.22615 -33.23950 -31.72280 -31.69937 -29.66259 -28.68481 -27.43689 -26.28955 -24.14792 -23.42461 -22.82243 -21.94918 -21.50808 -21.37307 -20.68558 -19.22599 -18.82515 -17.73673 -17.46898 -16.92327 -16.85222 -16.33025 -16.20768 -15.99551 -15.79315 -15.44676 -15.08303 -14.87488 -14.75726 -14.57990 -14.33901 -14.23334 -13.89311 -13.76248 -13.51804 -13.44436 -13.30075 -13.22707 -12.85073 -12.52821 -12.34152 -12.32675 -12.29733 -12.28085 -12.08159 -12.00925 -11.84629 -11.40914 -11.15929 -11.04252 -10.78926 -10.65195 -10.28469 -10.19910 -9.77725 -9.54437 -9.38984 -8.25869 -6.41812 0.48868 0.54505 1.41031 1.43105 1.52839 1.64914 2.12657 2.38047 2.75585 2.92390 3.00977 3.11039 3.63556 3.80621 3.83243 3.88831 4.06493 4.08421 4.16222 4.18304 4.23281 4.28019 4.33902 4.40126 4.51922 4.58656 4.61320 4.65966 4.69398 4.72537 4.74382 4.92674 4.94226 4.98228 5.05966 5.13962 5.20078 5.21695 5.23981 5.25515 5.36619 5.38628 5.50918 5.53256 5.62851 5.67400 5.75146 5.78073 6.04015 6.17920 6.18693 6.65199 7.06243 7.27804 7.35265 7.55925 8.80249 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028280 B = 0.001627 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.854659 B =17204.430143 C =17407.611625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.586 6.586 11 C -0.110 4.110 12 C 0.108 3.892 13 N -0.636 5.636 14 C 0.708 3.292 15 O -0.648 6.648 16 N -0.725 5.725 17 C 0.171 3.829 18 C -0.159 4.159 19 H 0.129 0.871 20 C -0.161 4.161 21 C -0.129 4.129 22 H 0.094 0.906 23 C -0.045 4.045 24 C -0.087 4.087 25 C -0.133 4.133 26 C -0.132 4.132 27 C -0.137 4.137 28 C -0.130 4.130 29 C -0.125 4.125 30 C 0.143 3.857 31 H 0.269 0.731 32 H 0.375 0.625 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.411 0.589 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.126 0.874 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.027 0.973 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.982 -26.380 -12.360 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.086 0.914 9 C 0.191 3.809 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.014 4.014 13 N -0.373 5.373 14 C 0.410 3.590 15 O -0.531 6.531 16 N -0.382 5.382 17 C 0.047 3.953 18 C -0.178 4.178 19 H 0.147 0.853 20 C -0.198 4.198 21 C -0.148 4.148 22 H 0.112 0.888 23 C -0.082 4.082 24 C -0.087 4.087 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.147 4.147 29 C -0.143 4.143 30 C 0.019 3.981 31 H 0.079 0.921 32 H 0.224 0.776 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.248 0.752 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.144 0.856 45 H 0.150 0.850 46 H 0.153 0.847 47 H 0.155 0.845 48 H 0.152 0.848 49 H 0.046 0.954 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.277 -26.323 -12.831 29.311 hybrid contribution -0.338 1.861 -0.005 1.892 sum -1.615 -24.462 -12.836 27.672 Atomic orbital electron populations 1.69814 1.07139 1.28427 1.50114 1.25828 0.95791 1.02853 0.93130 0.85478 0.78891 0.78770 0.78032 1.20593 1.20727 1.18780 1.21855 0.93977 0.91396 1.52389 0.91377 1.19728 0.87109 0.93626 0.80391 1.86088 1.51708 1.56236 1.45343 1.22756 0.96840 0.93670 1.01497 1.22461 0.92333 0.94810 0.91813 1.47910 1.51684 1.12007 1.25703 1.15772 0.79939 0.82898 0.80381 1.90846 1.46845 1.61208 1.54182 1.44898 1.55305 1.07238 1.30769 1.20702 0.96283 0.92002 0.86310 1.22449 1.06705 0.92619 0.96000 0.85278 1.23346 0.93893 1.03659 0.98876 1.22300 0.96085 0.95657 1.00718 0.88760 1.20191 1.00280 0.92301 0.95473 1.20006 0.93845 0.98154 0.96727 1.21318 0.94185 1.00408 0.99217 1.21424 1.00787 0.98410 0.94344 1.21447 0.95012 0.99839 0.99216 1.21456 0.94612 0.99839 0.98834 1.21312 1.00674 0.98365 0.93925 1.22332 0.99024 0.79155 0.97634 0.92136 0.77620 0.89804 0.89025 0.90963 0.87865 0.75201 0.93073 0.92983 0.86530 0.89209 0.89269 0.90064 0.85618 0.84965 0.84672 0.84500 0.84784 0.95406 0.95570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.68 10.97 21.45 0.24 -50.44 16 2 C 0.02 1.32 5.28 84.65 0.45 1.77 16 3 Si 0.96 42.50 29.54 68.60 2.03 44.53 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.56 -29.47 8.12 25.60 0.21 -29.27 16 8 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 9 C 0.23 11.28 0.85 -10.35 -0.01 11.27 16 10 O -0.59 -29.63 13.08 -148.98 -1.95 -31.58 16 11 C -0.11 -4.10 6.24 32.07 0.20 -3.90 16 12 C 0.11 3.43 6.58 86.93 0.57 4.00 16 13 N -0.64 -26.43 3.32 -829.31 -2.76 -29.19 16 14 C 0.71 29.13 8.49 179.05 1.52 30.65 16 15 O -0.65 -33.11 16.67 -3.98 -0.07 -33.18 16 16 N -0.72 -20.55 5.52 -478.54 -2.64 -23.19 16 17 C 0.17 4.23 5.96 86.38 0.51 4.74 16 18 C -0.16 -2.48 5.57 -10.79 -0.06 -2.54 16 19 H 0.13 1.58 8.04 -2.39 -0.02 1.56 16 20 C -0.16 -2.13 9.82 30.60 0.30 -1.82 16 21 C -0.13 -1.83 5.44 -10.79 -0.06 -1.89 16 22 H 0.09 1.63 8.07 -2.39 -0.02 1.61 16 23 C -0.05 -0.53 5.63 29.85 0.17 -0.37 16 24 C -0.09 -1.26 5.09 -19.87 -0.10 -1.36 16 25 C -0.13 -2.03 9.70 22.27 0.22 -1.82 16 26 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 27 C -0.14 -1.81 10.05 22.27 0.22 -1.59 16 28 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 29 C -0.12 -1.68 9.70 22.27 0.22 -1.46 16 30 C 0.14 7.27 5.24 86.73 0.45 7.72 16 31 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.37 19.90 7.45 -74.05 -0.55 19.35 16 33 H 0.08 3.01 8.04 -2.39 -0.02 2.99 16 34 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.10 2.34 7.29 -2.39 -0.02 2.32 16 37 H 0.41 8.73 6.87 -92.71 -0.64 8.09 16 38 H 0.05 1.41 7.88 -2.39 -0.02 1.39 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.12 1.10 8.03 -2.39 -0.02 1.08 16 41 H 0.09 1.35 8.03 -2.39 -0.02 1.33 16 42 H 0.09 0.80 7.82 -2.39 -0.02 0.78 16 43 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 44 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 46 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 47 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 48 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 49 H 0.03 1.58 7.81 -2.39 -0.02 1.56 16 50 H 0.03 1.49 7.92 -2.39 -0.02 1.47 16 Total: -1.00 -70.58 410.40 -0.14 -70.72 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -0.24 Total: 41.29 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 5.26 Total: 11.03 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -5.16 Total: -102.82 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -2.01 Total: -64.75 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -70.58 -0.14 -70.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772441924.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.867 kcal (2) G-P(sol) polarization free energy of solvation -70.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds