Wall clock time and date at job start Wed Apr 1 2020 03:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38396 * 120.11588 * 2 1 4 4 C 1.37697 * 119.97911 * 180.02562 * 3 2 1 5 5 C 1.38934 * 120.78532 * 0.33999 * 4 3 2 6 6 C 1.39246 * 118.87284 * 359.50197 * 5 4 3 7 7 C 1.37965 * 120.24264 * 0.32848 * 6 5 4 8 8 C 1.50696 * 119.82740 * 180.02562 * 7 6 5 9 9 O 1.36128 * 111.22496 * 178.94922 * 5 4 3 10 10 C 1.43773 * 109.24646 * 19.01774 * 9 5 4 11 11 H 1.08990 * 110.90969 * 213.85526 * 10 9 5 12 12 C 1.50700 * 110.74751 * 90.57390 * 10 9 5 13 13 O 1.21281 * 120.00025 * 1.63663 * 12 10 9 14 14 N 1.34779 * 120.00152 * 181.62626 * 12 10 9 15 15 C 1.46494 * 120.00215 * 180.02562 * 14 12 10 16 16 C 1.53045 * 109.46021 * 205.00354 * 15 14 12 17 17 C 1.53192 * 109.33739 * 178.59901 * 16 15 14 18 18 N 1.46998 * 108.74154 * 54.62332 * 17 16 15 19 19 C 1.36930 * 120.61644 * 126.38326 * 18 17 16 20 20 H 1.07998 * 120.00280 * 207.68527 * 19 18 17 21 21 C 1.38815 * 119.99720 * 27.69315 * 19 18 17 22 22 N 1.31614 * 120.00332 * 17.34405 * 21 19 18 23 23 Si 1.86808 * 119.99812 * 197.34769 * 21 19 18 24 24 H 1.48504 * 109.46698 * 59.99692 * 23 21 19 25 25 H 1.48500 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46909 * 299.99973 * 23 21 19 27 27 C 1.46925 * 118.75135 * 306.40734 * 18 17 16 28 28 C 1.53043 * 109.46214 * 84.93604 * 15 14 12 29 29 C 1.51639 * 132.17888 * 180.36516 * 4 3 2 30 30 H 1.08997 * 109.47447 * 89.99580 * 1 2 3 31 31 H 1.09007 * 109.47234 * 209.99817 * 1 2 3 32 32 H 1.08999 * 109.47306 * 329.99101 * 1 2 3 33 33 H 1.08000 * 120.00953 * 0.04935 * 3 2 1 34 34 H 1.08004 * 119.87422 * 180.33186 * 6 5 4 35 35 H 1.09001 * 109.47273 * 269.98185 * 8 7 6 36 36 H 1.09007 * 109.47183 * 29.97544 * 8 7 6 37 37 H 1.09002 * 109.47607 * 149.97750 * 8 7 6 38 38 H 0.97009 * 119.99666 * 0.02562 * 14 12 10 39 39 H 1.08997 * 109.44999 * 324.96617 * 15 14 12 40 40 H 1.09003 * 109.49403 * 298.56667 * 16 15 14 41 41 H 1.09000 * 109.49888 * 58.62856 * 16 15 14 42 42 H 1.09004 * 109.58473 * 174.44160 * 17 16 15 43 43 H 1.08995 * 109.58791 * 294.86074 * 17 16 15 44 44 H 0.97007 * 120.00009 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.58839 * 293.82233 * 27 18 17 46 46 H 1.09002 * 109.58770 * 173.39618 * 27 18 17 47 47 H 1.09007 * 109.49362 * 301.33705 * 28 15 14 48 48 H 1.08996 * 109.49819 * 61.39985 * 28 15 14 49 49 H 1.08994 * 110.94246 * 46.43471 * 29 4 3 50 50 H 1.09000 * 110.97194 * 282.76225 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2013 1.1971 0.0000 4 6 3.5783 1.1939 -0.0005 5 6 4.2865 -0.0014 -0.0082 6 6 3.5803 -1.2015 -0.0047 7 6 2.2007 -1.1958 -0.0007 8 6 1.4458 -2.5001 0.0036 9 8 5.6293 0.2215 -0.0306 10 6 5.8937 1.5665 0.4033 11 1 6.7553 1.9815 -0.1194 12 6 6.1024 1.6150 1.8949 13 8 6.0644 0.5926 2.5461 14 7 6.3316 2.7946 2.5054 15 6 6.5350 2.8417 3.9553 16 6 6.1579 4.2297 4.4783 17 6 6.3383 4.2650 5.9992 18 7 7.7113 3.8505 6.3216 19 6 8.5136 4.6409 7.1005 20 1 9.5866 4.6017 6.9844 21 6 7.9477 5.4923 8.0396 22 7 6.7036 5.3096 8.4283 23 14 8.9519 6.8975 8.7514 24 1 9.3797 7.8046 7.6561 25 1 8.1243 7.6538 9.7251 26 1 10.1500 6.3514 9.4381 27 6 8.2066 2.5727 5.7920 28 6 8.0047 2.5568 4.2735 29 6 4.5992 2.3151 0.0065 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5140 33 1 1.6634 2.1336 0.0008 34 1 4.1146 -2.1401 -0.0051 35 1 1.2605 -2.8161 -1.0230 36 1 2.0358 -3.2597 0.5166 37 1 0.4952 -2.3681 0.5204 38 1 6.3617 3.6124 1.9845 39 1 5.9075 2.0903 4.4345 40 1 6.8017 4.9792 4.0180 41 1 5.1178 4.4417 4.2303 42 1 6.1662 5.2776 6.3641 43 1 5.6307 3.5806 6.4671 44 1 6.3083 5.9044 9.0848 45 1 7.6513 1.7503 6.2431 46 1 9.2673 2.4689 6.0206 47 1 8.2789 1.5779 3.8802 48 1 8.6311 3.3218 3.8147 49 1 4.3429 3.0706 0.7492 50 1 4.6952 2.7615 -0.9833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080107681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:06 Heat of formation + Delta-G solvation = -27.957377 kcal Electronic energy + Delta-G solvation = -30184.828959 eV Core-core repulsion = 26177.507246 eV Total energy + Delta-G solvation = -4007.321713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.67738 -39.52151 -38.27770 -37.13931 -34.52988 -33.53984 -32.43443 -32.10992 -31.15648 -30.10498 -29.35330 -27.27112 -26.91007 -25.05655 -23.69383 -22.37628 -22.26261 -21.92707 -20.79419 -20.24638 -19.36060 -17.84648 -17.28664 -16.79666 -16.63952 -15.77046 -15.35799 -15.25417 -14.80350 -14.65592 -14.36304 -14.25853 -13.92288 -13.75793 -13.56991 -13.37595 -13.24518 -13.03203 -12.96701 -12.80980 -12.62416 -12.40948 -12.36693 -12.25914 -11.90476 -11.55121 -11.49168 -11.27089 -11.14899 -10.95512 -10.86559 -10.73125 -10.52445 -10.31664 -10.06910 -9.88927 -9.71114 -9.48906 -8.92149 -8.78615 -8.47719 -8.12059 -6.71361 -5.81410 -3.23187 1.05921 1.18609 2.54781 2.83384 3.29689 3.37303 3.42807 3.43861 3.48853 4.11144 4.20000 4.47882 4.58205 4.58959 4.65745 4.81320 4.86247 4.97887 5.09801 5.23593 5.25890 5.28759 5.31257 5.39182 5.40888 5.46413 5.47701 5.52542 5.55572 5.60125 5.74310 5.83463 5.93062 6.04175 6.07781 6.20601 6.22262 6.28549 6.35563 6.46642 6.49214 6.52877 6.54818 6.77009 6.85510 6.96551 6.99380 7.28565 7.53370 7.63453 7.77542 8.26617 8.42252 9.18522 9.81847 10.38820 11.27591 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020275 B = 0.002204 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.695360 B =12699.099349 C =13133.951294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.118 4.118 3 C -0.064 4.064 4 C -0.177 4.177 5 C 0.113 3.887 6 C -0.130 4.130 7 C -0.053 4.053 8 C -0.116 4.116 9 O -0.275 6.275 10 C 0.063 3.937 11 H 0.141 0.859 12 C 0.494 3.506 13 O -0.520 6.520 14 N -0.719 5.719 15 C 0.152 3.848 16 C -0.146 4.146 17 C 0.174 3.826 18 N -0.593 5.593 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.147 3.853 28 C -0.139 4.139 29 C -0.098 4.098 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.396 0.604 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.021 0.979 44 H 0.255 0.745 45 H 0.020 0.980 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.097 0.903 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 -7.843 -22.008 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.118 4.118 3 C -0.082 4.082 4 C -0.178 4.178 5 C 0.068 3.932 6 C -0.149 4.149 7 C -0.053 4.053 8 C -0.173 4.173 9 O -0.187 6.187 10 C 0.003 3.997 11 H 0.158 0.842 12 C 0.278 3.722 13 O -0.395 6.395 14 N -0.371 5.371 15 C 0.049 3.951 16 C -0.186 4.186 17 C 0.048 3.952 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.020 3.980 28 C -0.180 4.180 29 C -0.135 4.135 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.229 0.771 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.116 0.884 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.658 -8.663 -21.433 25.456 hybrid contribution 0.649 1.362 0.188 1.521 sum -10.009 -7.300 -21.245 24.593 Atomic orbital electron populations 1.20765 0.90849 1.02909 1.02121 1.19587 0.96068 0.92102 1.04056 1.20105 0.91536 0.97927 0.98648 1.20643 0.94692 0.94170 1.08270 1.19484 0.82983 0.94542 0.96235 1.20071 0.92756 0.95778 1.06270 1.19423 0.92252 0.95301 0.98316 1.20870 1.00164 0.93749 1.02491 1.86917 1.20385 1.31086 1.80299 1.23364 1.00684 0.82109 0.93587 0.84186 1.20757 0.77463 0.84515 0.89508 1.90748 1.49385 1.33417 1.65901 1.46298 1.72364 1.08425 1.09985 1.21079 0.97311 0.99238 0.77512 1.22539 0.99697 0.94398 1.01939 1.20763 0.85602 1.01746 0.87125 1.44109 1.12023 1.17783 1.57633 1.19152 0.89971 1.16850 1.12264 0.91647 1.25047 0.96772 1.01198 0.96668 1.70018 1.13902 1.38151 1.32720 0.86359 0.79380 0.82484 0.78485 1.21058 1.21634 1.20857 1.20874 0.98058 0.88988 0.90034 1.22382 0.95319 1.00393 0.99856 1.21757 0.90729 0.97083 1.03957 0.91373 0.91158 0.91654 0.85734 0.85402 0.90902 0.91310 0.90810 0.77052 0.90058 0.92091 0.92753 0.88916 0.96116 0.93527 0.96173 0.92489 0.92738 0.92235 0.88428 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.61 36.00 0.35 -0.43 16 2 C -0.12 -1.18 5.89 -104.56 -0.62 -1.80 16 3 C -0.06 -0.67 9.70 -39.72 -0.39 -1.06 16 4 C -0.18 -2.08 6.26 -104.10 -0.65 -2.73 16 5 C 0.11 1.53 6.90 -38.95 -0.27 1.26 16 6 C -0.13 -1.61 9.70 -39.31 -0.38 -1.99 16 7 C -0.05 -0.55 5.87 -104.72 -0.61 -1.17 16 8 C -0.12 -0.86 9.59 36.00 0.35 -0.51 16 9 O -0.27 -3.89 10.41 -39.21 -0.41 -4.30 16 10 C 0.06 0.71 4.11 -26.98 -0.11 0.60 16 11 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 12 C 0.49 7.36 7.03 -10.98 -0.08 7.28 16 13 O -0.52 -10.28 16.19 -13.50 -0.22 -10.50 16 14 N -0.72 -9.74 4.91 -53.77 -0.26 -10.00 16 15 C 0.15 2.62 2.42 -67.89 -0.16 2.46 16 16 C -0.15 -2.61 5.55 -26.61 -0.15 -2.76 16 17 C 0.17 4.06 5.31 -3.67 -0.02 4.04 16 18 N -0.59 -14.77 3.00 -172.26 -0.52 -15.28 16 19 C -0.25 -6.88 9.59 -15.06 -0.14 -7.02 16 20 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -25.97 11.19 55.49 0.62 -25.35 16 23 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 28 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 29 C -0.10 -0.90 6.64 -26.52 -0.18 -1.07 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 5.94 -51.93 -0.31 0.13 16 32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.07 0.46 5.94 -51.93 -0.31 0.15 16 38 H 0.40 4.01 8.60 -40.82 -0.35 3.66 16 39 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.10 0.82 7.78 -51.93 -0.40 0.41 16 50 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -33.88 397.57 -11.10 -44.99 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.95 Total: 2.52 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.33 Total: -4.47 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.16 Total: -50.64 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.63 Total: -14.80 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.88 -11.10 -44.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080107681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.028 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds