Wall clock time and date at job start Wed Apr 1 2020 03:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38396 * 120.11588 * 2 1 4 4 C 1.37697 * 119.97911 * 180.02562 * 3 2 1 5 5 C 1.38934 * 120.78532 * 0.33999 * 4 3 2 6 6 C 1.39246 * 118.87284 * 359.50197 * 5 4 3 7 7 C 1.37965 * 120.24264 * 0.32848 * 6 5 4 8 8 C 1.50696 * 119.82740 * 180.02562 * 7 6 5 9 9 O 1.36128 * 111.22496 * 178.94922 * 5 4 3 10 10 C 1.43773 * 109.24646 * 19.01774 * 9 5 4 11 11 H 1.08990 * 110.90969 * 213.85526 * 10 9 5 12 12 C 1.50700 * 110.74751 * 90.57390 * 10 9 5 13 13 O 1.21281 * 120.00025 * 1.63663 * 12 10 9 14 14 N 1.34779 * 120.00152 * 181.62626 * 12 10 9 15 15 C 1.46494 * 120.00215 * 180.02562 * 14 12 10 16 16 C 1.53045 * 109.46021 * 205.00354 * 15 14 12 17 17 C 1.53192 * 109.33739 * 178.59901 * 16 15 14 18 18 N 1.46998 * 108.74154 * 54.62332 * 17 16 15 19 19 C 1.36930 * 120.61644 * 126.38326 * 18 17 16 20 20 H 1.07998 * 120.00280 * 207.68527 * 19 18 17 21 21 C 1.38815 * 119.99720 * 27.69315 * 19 18 17 22 22 N 1.31614 * 120.00332 * 17.34405 * 21 19 18 23 23 Si 1.86808 * 119.99812 * 197.34769 * 21 19 18 24 24 H 1.48504 * 109.46698 * 59.99692 * 23 21 19 25 25 H 1.48500 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46909 * 299.99973 * 23 21 19 27 27 C 1.46925 * 118.75135 * 306.40734 * 18 17 16 28 28 C 1.53043 * 109.46214 * 84.93604 * 15 14 12 29 29 C 1.51639 * 132.17888 * 180.36516 * 4 3 2 30 30 H 1.08997 * 109.47447 * 89.99580 * 1 2 3 31 31 H 1.09007 * 109.47234 * 209.99817 * 1 2 3 32 32 H 1.08999 * 109.47306 * 329.99101 * 1 2 3 33 33 H 1.08000 * 120.00953 * 0.04935 * 3 2 1 34 34 H 1.08004 * 119.87422 * 180.33186 * 6 5 4 35 35 H 1.09001 * 109.47273 * 269.98185 * 8 7 6 36 36 H 1.09007 * 109.47183 * 29.97544 * 8 7 6 37 37 H 1.09002 * 109.47607 * 149.97750 * 8 7 6 38 38 H 0.97009 * 119.99666 * 0.02562 * 14 12 10 39 39 H 1.08997 * 109.44999 * 324.96617 * 15 14 12 40 40 H 1.09003 * 109.49403 * 298.56667 * 16 15 14 41 41 H 1.09000 * 109.49888 * 58.62856 * 16 15 14 42 42 H 1.09004 * 109.58473 * 174.44160 * 17 16 15 43 43 H 1.08995 * 109.58791 * 294.86074 * 17 16 15 44 44 H 0.97007 * 120.00009 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.58839 * 293.82233 * 27 18 17 46 46 H 1.09002 * 109.58770 * 173.39618 * 27 18 17 47 47 H 1.09007 * 109.49362 * 301.33705 * 28 15 14 48 48 H 1.08996 * 109.49819 * 61.39985 * 28 15 14 49 49 H 1.08994 * 110.94246 * 46.43471 * 29 4 3 50 50 H 1.09000 * 110.97194 * 282.76225 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2013 1.1971 0.0000 4 6 3.5783 1.1939 -0.0005 5 6 4.2865 -0.0014 -0.0082 6 6 3.5803 -1.2015 -0.0047 7 6 2.2007 -1.1958 -0.0007 8 6 1.4458 -2.5001 0.0036 9 8 5.6293 0.2215 -0.0306 10 6 5.8937 1.5665 0.4033 11 1 6.7553 1.9815 -0.1194 12 6 6.1024 1.6150 1.8949 13 8 6.0644 0.5926 2.5461 14 7 6.3316 2.7946 2.5054 15 6 6.5350 2.8417 3.9553 16 6 6.1579 4.2297 4.4783 17 6 6.3383 4.2650 5.9992 18 7 7.7113 3.8505 6.3216 19 6 8.5136 4.6409 7.1005 20 1 9.5866 4.6017 6.9844 21 6 7.9477 5.4923 8.0396 22 7 6.7036 5.3096 8.4283 23 14 8.9519 6.8975 8.7514 24 1 9.3797 7.8046 7.6561 25 1 8.1243 7.6538 9.7251 26 1 10.1500 6.3514 9.4381 27 6 8.2066 2.5727 5.7920 28 6 8.0047 2.5568 4.2735 29 6 4.5992 2.3151 0.0065 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5140 33 1 1.6634 2.1336 0.0008 34 1 4.1146 -2.1401 -0.0051 35 1 1.2605 -2.8161 -1.0230 36 1 2.0358 -3.2597 0.5166 37 1 0.4952 -2.3681 0.5204 38 1 6.3617 3.6124 1.9845 39 1 5.9075 2.0903 4.4345 40 1 6.8017 4.9792 4.0180 41 1 5.1178 4.4417 4.2303 42 1 6.1662 5.2776 6.3641 43 1 5.6307 3.5806 6.4671 44 1 6.3083 5.9044 9.0848 45 1 7.6513 1.7503 6.2431 46 1 9.2673 2.4689 6.0206 47 1 8.2789 1.5779 3.8802 48 1 8.6311 3.3218 3.8147 49 1 4.3429 3.0706 0.7492 50 1 4.6952 2.7615 -0.9833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080107681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:05 Heat of formation + Delta-G solvation = -47.774733 kcal Electronic energy + Delta-G solvation = -30185.688304 eV Core-core repulsion = 26177.507246 eV Total energy + Delta-G solvation = -4008.181058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.57643 -40.70531 -39.31179 -38.59561 -36.08303 -34.46793 -33.91814 -32.98922 -32.27200 -31.67228 -30.93489 -28.11286 -27.68829 -26.77269 -24.74804 -23.94203 -23.47911 -23.11259 -21.76634 -21.38770 -20.90827 -19.13997 -18.49452 -18.07825 -17.71360 -17.00626 -16.77287 -16.29688 -16.14138 -15.74798 -15.60019 -15.38801 -15.20136 -14.99654 -14.82591 -14.62406 -14.41417 -14.12471 -14.07534 -13.99054 -13.56245 -13.52691 -13.24157 -13.11024 -13.02269 -12.89022 -12.69519 -12.59531 -12.55921 -12.28516 -12.18156 -12.06228 -12.04651 -11.90480 -11.71861 -11.59513 -11.38744 -10.79060 -10.56508 -10.10337 -9.71569 -8.95333 -8.73473 -7.89038 -5.34620 0.26114 0.34937 1.43533 1.48886 1.50339 1.57804 1.83858 2.30309 2.51410 2.67773 3.26468 3.34701 3.42313 3.56192 3.66013 3.86550 3.87290 3.94427 4.00217 4.12388 4.16507 4.27452 4.28591 4.42903 4.46289 4.61100 4.61186 4.67723 4.70558 4.74830 4.77115 4.81487 4.82931 4.93331 4.98065 5.01168 5.02043 5.11805 5.14016 5.23715 5.25782 5.33766 5.37755 5.44335 5.46643 5.62731 5.63145 5.68967 5.71797 6.15985 6.36993 6.49873 7.12718 7.16347 7.81852 8.35065 9.18079 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020275 B = 0.002204 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.695360 B =12699.099349 C =13133.951294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.123 4.123 3 C -0.075 4.075 4 C -0.189 4.189 5 C 0.075 3.925 6 C -0.155 4.155 7 C -0.063 4.063 8 C -0.115 4.115 9 O -0.299 6.299 10 C 0.065 3.935 11 H 0.181 0.819 12 C 0.492 3.508 13 O -0.576 6.576 14 N -0.700 5.700 15 C 0.163 3.837 16 C -0.127 4.127 17 C 0.178 3.822 18 N -0.609 5.609 19 C -0.265 4.265 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.278 1.278 27 C 0.144 3.856 28 C -0.124 4.124 29 C -0.088 4.088 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.418 0.582 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.066 0.934 43 H -0.009 1.009 44 H 0.251 0.749 45 H 0.003 0.997 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.109 0.891 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.256 -6.214 -24.439 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.189 4.189 5 C 0.031 3.969 6 C -0.173 4.173 7 C -0.063 4.063 8 C -0.171 4.171 9 O -0.212 6.212 10 C 0.005 3.995 11 H 0.198 0.802 12 C 0.278 3.722 13 O -0.455 6.455 14 N -0.353 5.353 15 C 0.058 3.942 16 C -0.166 4.166 17 C 0.051 3.949 18 N -0.332 5.332 19 C -0.395 4.395 20 H 0.086 0.914 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.798 3.202 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.204 1.204 27 C 0.018 3.982 28 C -0.164 4.164 29 C -0.125 4.125 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.256 0.744 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.009 0.991 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.127 0.873 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.179 -7.013 -23.920 27.319 hybrid contribution 0.771 0.745 0.975 1.449 sum -10.408 -6.269 -22.945 25.963 Atomic orbital electron populations 1.20832 0.88614 1.03722 1.03313 1.20044 0.97776 0.91816 1.02642 1.20487 0.91386 0.99149 0.98215 1.21038 0.95572 0.94476 1.07861 1.19843 0.83132 0.95768 0.98203 1.20349 0.93916 0.95740 1.07325 1.19798 0.91760 0.96999 0.97761 1.20931 1.00288 0.92256 1.03627 1.86879 1.21055 1.32733 1.80513 1.23628 1.03453 0.81767 0.90632 0.80203 1.21547 0.75867 0.83612 0.91166 1.90729 1.51816 1.35434 1.67508 1.45941 1.71661 1.09405 1.08324 1.20646 0.95959 0.97848 0.79720 1.22249 1.01647 0.95042 0.97667 1.20597 0.84381 0.99202 0.90680 1.44370 1.12321 1.18711 1.57814 1.19489 0.90479 1.17098 1.12434 0.91433 1.25827 0.97866 1.03523 0.97303 1.70184 1.15534 1.39015 1.33462 0.85304 0.77775 0.79388 0.77731 1.19954 1.22066 1.20397 1.20956 0.97718 0.87248 0.92294 1.22170 0.96302 1.00906 0.97014 1.21863 0.88335 0.96159 1.06136 0.89854 0.90311 0.90914 0.83435 0.85847 0.89387 0.91518 0.89420 0.74407 0.93146 0.90560 0.90296 0.91560 0.99106 0.93966 0.97940 0.92322 0.92609 0.90885 0.87260 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.61 71.23 0.68 -0.57 16 2 C -0.12 -2.27 5.89 -19.83 -0.12 -2.39 16 3 C -0.07 -1.43 9.70 22.18 0.22 -1.21 16 4 C -0.19 -4.16 6.26 -19.53 -0.12 -4.28 16 5 C 0.08 2.05 6.90 22.68 0.16 2.21 16 6 C -0.15 -3.96 9.70 22.45 0.22 -3.74 16 7 C -0.06 -1.30 5.87 -19.93 -0.12 -1.41 16 8 C -0.11 -1.58 9.59 71.23 0.68 -0.90 16 9 O -0.30 -8.40 10.41 -76.78 -0.80 -9.20 16 10 C 0.06 1.32 4.11 30.43 0.13 1.44 16 11 H 0.18 2.12 8.14 -2.39 -0.02 2.11 16 12 C 0.49 14.08 7.03 87.66 0.62 14.70 16 13 O -0.58 -23.24 16.19 15.19 0.25 -22.99 16 14 N -0.70 -17.38 4.91 -442.40 -2.17 -19.55 16 15 C 0.16 5.50 2.42 45.02 0.11 5.61 16 16 C -0.13 -4.35 5.55 30.67 0.17 -4.18 16 17 C 0.18 8.44 5.31 86.35 0.46 8.89 16 18 N -0.61 -30.78 3.00 -698.91 -2.09 -32.87 16 19 C -0.27 -14.51 9.59 84.04 0.81 -13.71 16 20 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 21 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 22 N -0.94 -55.07 11.19 21.65 0.24 -54.83 16 23 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.14 6.34 6.52 86.36 0.56 6.91 16 28 C -0.12 -4.44 5.65 30.67 0.17 -4.27 16 29 C -0.09 -1.34 6.64 30.73 0.20 -1.13 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.78 5.94 -2.38 -0.01 0.77 16 32 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 33 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.12 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 37 H 0.09 0.94 5.94 -2.39 -0.01 0.93 16 38 H 0.42 6.82 8.60 -92.70 -0.80 6.03 16 39 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 42 H 0.07 3.50 6.04 -2.38 -0.01 3.48 16 43 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 45 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 46 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 47 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 48 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.11 1.40 7.78 -2.39 -0.02 1.39 16 50 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -77.64 397.57 2.85 -74.79 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.15 Total: 18.83 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.24 Total: -0.39 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -4.03 Total: -107.25 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.55 Total: -32.19 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -77.64 2.85 -74.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080107681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.015 kcal (2) G-P(sol) polarization free energy of solvation -77.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds