Wall clock time and date at job start Wed Apr 1 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38148 * 119.89468 * 2 1 4 4 C 1.38210 * 119.93039 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94111 * 359.97438 * 4 3 2 6 6 C 1.38453 * 120.21200 * 0.03065 * 5 4 3 7 7 C 1.38266 * 119.85029 * 359.96907 * 6 5 4 8 8 C 1.51364 * 109.74999 * 180.02562 * 7 6 5 9 9 C 1.54346 * 105.17609 * 17.18850 * 8 7 6 10 10 C 1.51367 * 130.39692 * 179.97438 * 6 5 4 11 11 H 1.09001 * 110.30522 * 43.78009 * 10 6 5 12 12 N 1.46498 * 110.30372 * 281.72612 * 10 6 5 13 13 C 1.34777 * 119.99828 * 86.17623 * 12 10 6 14 14 O 1.21353 * 120.00267 * 0.28147 * 13 12 10 15 15 C 1.49454 * 120.00301 * 180.27890 * 13 12 10 16 16 O 1.21353 * 119.99427 * 359.97438 * 15 13 12 17 17 N 1.34777 * 120.00297 * 180.02562 * 15 13 12 18 18 C 1.46495 * 119.99663 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.46738 * 179.97438 * 18 17 15 20 20 C 1.53001 * 109.46866 * 299.99521 * 19 18 17 21 21 C 1.52993 * 109.47478 * 59.99687 * 19 18 17 22 22 C 1.50708 * 109.47029 * 179.97438 * 19 18 17 23 23 H 1.08001 * 119.99800 * 0.02562 * 22 19 18 24 24 C 1.37876 * 119.99760 * 179.97438 * 22 19 18 25 25 N 1.31514 * 120.00347 * 0.02562 * 24 22 19 26 26 Si 1.86803 * 119.99775 * 179.97438 * 24 22 19 27 27 H 1.48498 * 109.46867 * 90.00546 * 26 24 22 28 28 H 1.48501 * 109.47216 * 210.00404 * 26 24 22 29 29 H 1.48499 * 109.47135 * 330.00745 * 26 24 22 30 30 H 1.09004 * 109.47414 * 89.99892 * 1 2 3 31 31 H 1.09000 * 109.47378 * 210.00421 * 1 2 3 32 32 H 1.09004 * 109.47106 * 330.00375 * 1 2 3 33 33 H 1.07996 * 120.03031 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.02648 * 179.97438 * 4 3 2 35 35 H 1.07999 * 119.89451 * 180.02562 * 5 4 3 36 36 H 1.09003 * 110.30437 * 136.11817 * 8 7 6 37 37 H 1.09003 * 110.29676 * 258.16801 * 8 7 6 38 38 H 1.08997 * 110.81993 * 215.42164 * 9 8 7 39 39 H 1.09002 * 110.81854 * 91.87113 * 9 8 7 40 40 H 0.97001 * 120.00384 * 266.46070 * 12 10 6 41 41 H 0.97000 * 119.99736 * 359.97438 * 17 15 13 42 42 H 1.09007 * 109.47376 * 299.99203 * 18 17 15 43 43 H 1.08997 * 109.47774 * 59.99894 * 18 17 15 44 44 H 1.08998 * 109.46846 * 60.00526 * 20 19 18 45 45 H 1.09001 * 109.46667 * 180.02562 * 20 19 18 46 46 H 1.08997 * 109.47313 * 299.99799 * 20 19 18 47 47 H 1.09006 * 109.47169 * 59.99838 * 21 19 18 48 48 H 1.09001 * 109.47449 * 179.97438 * 21 19 18 49 49 H 1.08998 * 109.47377 * 300.00174 * 21 19 18 50 50 H 0.96996 * 120.00389 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1977 0.0000 4 6 3.5776 1.1985 0.0005 5 6 4.2679 0.0019 0.0016 6 6 3.5795 -1.1995 0.0015 7 6 2.1969 -1.2004 0.0010 8 6 1.6864 -2.6254 0.0016 9 6 2.8896 -3.4855 0.4428 10 6 4.0921 -2.6237 0.0020 11 1 4.9143 -2.7296 0.7097 12 7 4.5276 -3.0077 -1.3430 13 6 5.7812 -2.7276 -1.7510 14 8 6.5508 -2.1619 -1.0025 15 6 6.2236 -3.1138 -3.1254 16 8 5.4541 -3.6799 -3.8737 17 7 7.4774 -2.8342 -3.5332 18 6 7.9107 -3.2122 -4.8805 19 6 9.3646 -2.7828 -5.0879 20 6 9.4766 -1.2658 -4.9230 21 6 10.2535 -3.4753 -4.0531 22 6 9.8106 -3.1722 -6.4737 23 1 9.1255 -3.6753 -7.1401 24 6 11.0930 -2.8853 -6.8912 25 7 11.9270 -2.2723 -6.0800 26 14 11.6461 -3.3687 -8.6088 27 1 11.3568 -2.2593 -9.5525 28 1 13.1055 -3.6432 -8.5999 29 1 10.9157 -4.5879 -9.0393 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6543 2.1322 0.0004 34 1 4.1175 2.1339 0.0001 35 1 5.3478 0.0034 0.0024 36 1 0.8649 -2.7325 0.7100 37 1 1.3619 -2.9112 -0.9990 38 1 2.8905 -4.4449 -0.0745 39 1 2.8893 -3.6267 1.5236 40 1 3.9124 -3.4599 -1.9414 41 1 8.0925 -2.3820 -2.9348 42 1 7.8305 -4.2930 -4.9982 43 1 7.2778 -2.7185 -5.6178 44 1 9.1542 -0.9846 -3.9205 45 1 10.5123 -0.9599 -5.0712 46 1 8.8434 -0.7724 -5.6603 47 1 10.1736 -4.5561 -4.1705 48 1 11.2893 -3.1697 -4.2011 49 1 9.9311 -3.1941 -3.0506 50 1 12.8292 -2.0708 -6.3736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261405708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:56 Heat of formation + Delta-G solvation = -58.225240 kcal Electronic energy + Delta-G solvation = -29970.652543 eV Core-core repulsion = 25962.018316 eV Total energy + Delta-G solvation = -4008.634226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01039 -39.95519 -38.28396 -36.58191 -36.40314 -33.83889 -33.26877 -32.72564 -30.88878 -29.31110 -27.97919 -26.70926 -26.04823 -25.72328 -25.23547 -23.39738 -22.31449 -21.22271 -20.39117 -20.20192 -18.98884 -18.16479 -16.96167 -16.46209 -15.99547 -15.73808 -15.65423 -15.37245 -15.00996 -14.86696 -14.66878 -14.41579 -14.06095 -13.75804 -13.49844 -13.41731 -13.17422 -12.93468 -12.70364 -12.56736 -12.44010 -12.22338 -12.01759 -11.65475 -11.54892 -11.47057 -11.40119 -11.34846 -11.17632 -11.02201 -10.88271 -10.70720 -10.40076 -10.20269 -9.65361 -9.56691 -9.38190 -9.24401 -8.84211 -8.79073 -8.73788 -8.59914 -8.37252 -6.02758 -4.13536 1.07576 1.18393 1.66548 2.61157 3.27912 3.35072 3.38457 3.46632 3.53960 3.98755 4.00400 4.23358 4.39062 4.62289 4.68488 4.70815 4.81606 4.83154 4.90871 5.06714 5.23844 5.28193 5.31280 5.39722 5.44923 5.47234 5.51895 5.56321 5.64582 5.83544 5.98848 6.11399 6.17768 6.23523 6.31689 6.33874 6.44253 6.46966 6.63315 6.81450 6.82637 6.85056 6.94028 7.00287 7.11319 7.33318 7.54989 7.67054 7.72214 7.97625 7.99999 8.12696 8.32600 8.41464 8.86647 9.52326 10.98642 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.002163 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.704027 B =12939.513258 C =13295.450394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.113 4.113 4 C -0.121 4.121 5 C -0.089 4.089 6 C -0.111 4.111 7 C -0.087 4.087 8 C -0.083 4.083 9 C -0.126 4.126 10 C 0.182 3.818 11 H 0.101 0.899 12 N -0.695 5.695 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.495 3.505 16 O -0.536 6.536 17 N -0.680 5.680 18 C 0.128 3.872 19 C 0.056 3.944 20 C -0.134 4.134 21 C -0.133 4.133 22 C -0.507 4.507 23 H 0.058 0.942 24 C 0.066 3.934 25 N -0.884 5.884 26 Si 0.894 3.106 27 H -0.281 1.281 28 H -0.287 1.287 29 H -0.274 1.274 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.412 0.588 41 H 0.411 0.589 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.008 0.992 45 H 0.087 0.913 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.087 0.913 49 H 0.008 0.992 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.729 2.609 15.698 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.107 4.107 6 C -0.112 4.112 7 C -0.088 4.088 8 C -0.120 4.120 9 C -0.164 4.164 10 C 0.078 3.922 11 H 0.119 0.881 12 N -0.349 5.349 13 C 0.292 3.708 14 O -0.393 6.393 15 C 0.275 3.725 16 O -0.414 6.414 17 N -0.331 5.331 18 C 0.006 3.994 19 C 0.055 3.945 20 C -0.191 4.191 21 C -0.191 4.191 22 C -0.545 4.545 23 H 0.076 0.924 24 C -0.135 4.135 25 N -0.523 5.523 26 Si 0.722 3.278 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.199 1.199 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.249 0.751 41 H 0.248 0.752 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.027 0.973 45 H 0.106 0.894 46 H 0.046 0.954 47 H 0.047 0.953 48 H 0.106 0.894 49 H 0.027 0.973 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.479 2.656 15.687 25.933 hybrid contribution 0.413 -0.036 -0.998 1.081 sum -20.066 2.620 14.689 25.005 Atomic orbital electron populations 1.20762 0.91344 1.02571 1.02279 1.19401 0.95829 0.91861 1.01089 1.20968 0.94295 0.97176 1.00721 1.21082 0.94239 0.97908 1.00666 1.20822 1.00567 0.91127 0.98233 1.20752 0.94091 0.94815 1.01534 1.20386 0.93938 0.94446 1.00037 1.21081 0.98165 0.90399 1.02375 1.22594 0.92831 0.98403 1.02545 1.20378 0.97633 0.89852 0.84359 0.88128 1.45792 1.13270 1.59744 1.16060 1.20509 0.82542 0.79421 0.88366 1.90735 1.53137 1.40106 1.55298 1.19967 0.83894 0.81391 0.87266 1.90722 1.53285 1.41984 1.55427 1.46215 1.11799 1.56968 1.18140 1.21942 0.98485 0.99557 0.79394 1.18384 0.87268 0.92942 0.95899 1.21857 1.03859 0.97518 0.95895 1.21853 1.04222 0.98363 0.94661 1.20946 0.97554 1.38419 0.97612 0.92363 1.24885 0.96517 0.94810 0.97310 1.69805 1.06216 1.41078 1.35166 0.86556 0.77745 0.78923 0.84544 1.20713 1.21258 1.19906 0.91248 0.91619 0.91700 0.85950 0.85756 0.85571 0.90257 0.89905 0.89319 0.89106 0.75128 0.75192 0.91995 0.92046 0.97275 0.89427 0.95369 0.95347 0.89441 0.97267 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.87 36.00 0.36 -0.39 16 2 C -0.08 -0.76 5.88 -104.58 -0.62 -1.38 16 3 C -0.11 -1.07 9.69 -39.63 -0.38 -1.45 16 4 C -0.12 -1.27 10.05 -39.63 -0.40 -1.66 16 5 C -0.09 -1.07 10.04 -39.54 -0.40 -1.47 16 6 C -0.11 -1.25 5.75 -104.20 -0.60 -1.85 16 7 C -0.09 -0.85 6.00 -104.21 -0.63 -1.48 16 8 C -0.08 -0.59 6.27 -26.85 -0.17 -0.75 16 9 C -0.13 -0.87 6.66 -25.31 -0.17 -1.04 16 10 C 0.18 1.87 3.17 -68.04 -0.22 1.66 16 11 H 0.10 1.11 7.65 -51.93 -0.40 0.72 16 12 N -0.70 -8.37 5.10 -54.34 -0.28 -8.64 16 13 C 0.51 7.85 7.87 -11.58 -0.09 7.76 16 14 O -0.52 -8.76 15.98 5.49 0.09 -8.67 16 15 C 0.50 8.77 7.89 -11.58 -0.09 8.68 16 16 O -0.54 -10.34 16.48 5.49 0.09 -10.25 16 17 N -0.68 -12.71 4.95 -60.73 -0.30 -13.01 16 18 C 0.13 2.69 4.50 -4.04 -0.02 2.68 16 19 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 20 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 21 C -0.13 -3.05 8.08 37.15 0.30 -2.75 16 22 C -0.51 -13.17 8.01 -34.44 -0.28 -13.44 16 23 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 24 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 25 N -0.88 -23.62 9.35 55.43 0.52 -23.10 16 26 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.37 7.29 -51.93 -0.38 -0.01 16 32 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.13 1.63 7.86 -52.49 -0.41 1.22 16 36 H 0.08 0.44 7.62 -51.93 -0.40 0.04 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.52 8.05 -51.93 -0.42 0.10 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.41 4.51 8.06 -40.82 -0.33 4.18 16 41 H 0.41 7.55 5.63 -40.82 -0.23 7.32 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 45 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 49 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 50 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -29.20 401.45 -9.78 -38.99 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.67 Total: 9.81 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.26 Total: -6.80 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.06 Total: -44.75 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.20 -9.78 -38.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261405708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.240 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds