Wall clock time and date at job start Wed Apr 1 2020 03:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38340 * 119.85893 * 2 1 4 4 C 1.37970 * 120.14406 * 180.02562 * 3 2 1 5 5 C 1.39539 * 119.85444 * 359.97370 * 4 3 2 6 6 C 1.47807 * 120.14284 * 180.02562 * 5 4 3 7 7 C 1.32563 * 120.00585 * 179.97438 * 6 5 4 8 8 C 1.50696 * 120.00830 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47139 * 124.99526 * 8 7 6 10 10 O 1.21273 * 120.00259 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99654 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99714 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47004 * 180.02562 * 12 11 9 14 14 O 1.42904 * 110.64058 * 298.31066 * 13 12 11 15 15 C 1.55156 * 110.72286 * 174.97843 * 13 12 11 16 16 C 1.54903 * 101.58351 * 206.13369 * 15 13 12 17 17 N 1.47421 * 104.83315 * 37.00756 * 16 15 13 18 18 C 1.36939 * 125.64858 * 155.85141 * 17 16 15 19 19 H 1.07996 * 119.99982 * 353.90110 * 18 17 16 20 20 C 1.38817 * 119.99954 * 173.89711 * 18 17 16 21 21 N 1.31613 * 119.99986 * 6.83731 * 20 18 17 22 22 Si 1.86797 * 119.99814 * 186.83100 * 20 18 17 23 23 H 1.48505 * 109.47109 * 94.99070 * 22 20 18 24 24 H 1.48503 * 109.46980 * 214.98572 * 22 20 18 25 25 H 1.48496 * 109.47373 * 334.98809 * 22 20 18 26 26 C 1.47020 * 108.70220 * 335.86868 * 17 16 15 27 27 C 1.39537 * 119.71792 * 0.27424 * 5 4 3 28 28 C 1.37973 * 119.85359 * 359.45204 * 27 5 4 29 29 H 1.09000 * 109.47113 * 90.00180 * 1 2 3 30 30 H 1.09001 * 109.47205 * 210.00011 * 1 2 3 31 31 H 1.09002 * 109.46391 * 330.00331 * 1 2 3 32 32 H 1.08000 * 119.92973 * 359.97438 * 3 2 1 33 33 H 1.07994 * 120.07443 * 179.97438 * 4 3 2 34 34 H 1.08010 * 119.99842 * 359.97438 * 6 5 4 35 35 H 1.08010 * 119.99574 * 359.97438 * 7 6 5 36 36 H 1.09006 * 109.46752 * 5.00433 * 8 7 6 37 37 H 1.08995 * 109.47237 * 245.00285 * 8 7 6 38 38 H 0.97002 * 120.00465 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.47159 * 60.00196 * 12 11 9 40 40 H 1.08995 * 109.47361 * 300.00333 * 12 11 9 41 41 H 0.96699 * 113.99785 * 61.68887 * 14 13 12 42 42 H 1.09001 * 111.00881 * 88.05545 * 15 13 12 43 43 H 1.09003 * 111.00263 * 324.20864 * 15 13 12 44 44 H 1.09002 * 110.36741 * 278.16597 * 16 15 13 45 45 H 1.09003 * 110.36584 * 155.84338 * 16 15 13 46 46 H 0.97001 * 120.00020 * 179.97438 * 21 20 18 47 47 H 1.09006 * 109.87818 * 120.47590 * 26 17 16 48 48 H 1.08994 * 109.88526 * 241.48611 * 26 17 16 49 49 H 1.07998 * 120.07501 * 179.72515 * 27 5 4 50 50 H 1.07996 * 119.93105 * 180.27014 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1998 0.0000 4 6 3.5755 1.2066 -0.0005 5 6 4.2761 -0.0001 -0.0005 6 6 5.7542 -0.0002 -0.0005 7 6 6.4171 -1.1482 0.0000 8 6 7.9240 -1.1483 -0.0006 9 6 8.4267 -1.9624 1.1637 10 8 7.6389 -2.4909 1.9192 11 7 9.7519 -2.1041 1.3647 12 6 10.2406 -2.8960 2.4962 13 6 11.7706 -2.8960 2.4957 14 8 12.2739 -3.4970 1.3009 15 6 12.3201 -3.6207 3.7527 16 6 13.7044 -2.9462 3.9204 17 7 13.4856 -1.5372 3.5459 18 6 14.2449 -0.4747 3.9578 19 1 15.0248 -0.6202 4.6905 20 6 14.0122 0.7894 3.4335 21 7 12.9789 0.9946 2.6446 22 14 15.1656 2.1991 3.8479 23 1 16.1886 2.3320 2.7797 24 1 14.3888 3.4608 3.9489 25 1 15.8361 1.9255 5.1442 26 6 12.3168 -1.4618 2.6572 27 6 3.5755 -1.2068 -0.0058 28 6 2.1958 -1.1999 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3632 0.8901 0.5138 32 1 1.6524 2.1331 -0.0004 33 1 4.1120 2.1439 -0.0010 34 1 6.2943 0.9352 -0.0009 35 1 5.8770 -2.0836 0.0009 36 1 8.2875 -0.1245 0.0882 37 1 8.2870 -1.5833 -0.9318 38 1 10.3821 -1.6817 0.7602 39 1 9.8769 -3.9197 2.4074 40 1 9.8780 -2.4612 3.4276 41 1 12.0202 -3.0341 0.4907 42 1 12.4260 -4.6904 3.5721 43 1 11.6866 -3.4334 4.6198 44 1 14.4340 -3.4069 3.2544 45 1 14.0375 -3.0161 4.9559 46 1 12.8161 1.8780 2.2785 47 1 11.5539 -0.8225 3.1016 48 1 12.6140 -1.0643 1.6868 49 1 4.1119 -2.1441 -0.0103 50 1 1.6522 -2.1331 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699909708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:06 Heat of formation + Delta-G solvation = -29.226070 kcal Electronic energy + Delta-G solvation = -28890.946973 eV Core-core repulsion = 24883.570245 eV Total energy + Delta-G solvation = -4007.376728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.85617 -39.49015 -38.39552 -35.45577 -35.05139 -33.97016 -32.56132 -32.23729 -31.15023 -29.85270 -28.88143 -27.82889 -26.15918 -25.30683 -23.54324 -23.09363 -21.74968 -20.75542 -20.00333 -19.83865 -19.36659 -17.65555 -16.92406 -16.63778 -16.28875 -15.68768 -15.46275 -15.36351 -15.06671 -14.56835 -14.14890 -14.05974 -13.98276 -13.92891 -13.60589 -13.55905 -13.33748 -12.99562 -12.89738 -12.55202 -12.40722 -12.35988 -12.26492 -11.91396 -11.65208 -11.62039 -11.26654 -11.22383 -10.97889 -10.87354 -10.68238 -10.49034 -10.30256 -10.18663 -10.06713 -9.83454 -9.63833 -9.31658 -9.13361 -8.87925 -8.68064 -8.12350 -6.89718 -5.81024 -3.11674 0.74595 1.23636 2.31618 2.78531 3.36062 3.37194 3.42020 3.43379 3.73704 4.43322 4.46978 4.55390 4.56307 4.65971 4.77696 4.85082 4.91574 5.00819 5.10721 5.23023 5.25704 5.28587 5.31315 5.34561 5.45505 5.47114 5.48938 5.50365 5.55903 5.61435 5.83183 5.89589 5.90256 5.98629 6.13760 6.15943 6.23577 6.28269 6.38540 6.41940 6.49596 6.56094 6.63140 6.68626 6.82453 6.88400 7.26594 7.39971 7.62306 7.68408 8.05334 8.16147 8.35734 9.13748 9.74675 10.40898 11.31984 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013948 B = 0.001957 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.956671 B =14304.257777 C =15776.662367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.121 4.121 4 C -0.108 4.108 5 C -0.052 4.052 6 C -0.127 4.127 7 C -0.112 4.112 8 C -0.115 4.115 9 C 0.517 3.483 10 O -0.544 6.544 11 N -0.722 5.722 12 C 0.110 3.890 13 C 0.085 3.915 14 O -0.551 6.551 15 C -0.115 4.115 16 C 0.136 3.864 17 N -0.604 5.604 18 C -0.226 4.226 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.163 3.837 27 C -0.110 4.110 28 C -0.119 4.119 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.402 0.598 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.368 0.632 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.026 0.974 45 H 0.041 0.959 46 H 0.252 0.748 47 H 0.052 0.948 48 H 0.049 0.951 49 H 0.126 0.874 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.362 -3.831 -8.957 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.126 4.126 5 C -0.052 4.052 6 C -0.145 4.145 7 C -0.130 4.130 8 C -0.155 4.155 9 C 0.303 3.697 10 O -0.422 6.422 11 N -0.374 5.374 12 C -0.014 4.014 13 C 0.044 3.956 14 O -0.356 6.356 15 C -0.154 4.154 16 C 0.010 3.990 17 N -0.330 5.330 18 C -0.354 4.354 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.038 3.962 27 C -0.128 4.128 28 C -0.137 4.137 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.237 0.763 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.214 0.786 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.043 0.957 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.144 0.856 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.645 -4.407 -7.985 21.659 hybrid contribution 0.739 1.509 -0.471 1.745 sum -18.906 -2.898 -8.456 20.912 Atomic orbital electron populations 1.20793 0.91343 1.02723 1.02189 1.19977 0.96026 0.93252 1.00118 1.20950 0.94127 0.97463 1.01320 1.21263 0.94080 0.97431 0.99799 1.19042 0.93088 0.93176 0.99937 1.21645 0.91807 0.98341 1.02661 1.22908 0.93999 0.98526 0.97549 1.20775 0.94424 1.02205 0.98079 1.20456 0.82160 0.80797 0.86264 1.90691 1.55339 1.48631 1.47506 1.45945 1.07030 1.53438 1.30977 1.21937 0.94215 0.95468 0.89801 1.22915 0.89658 0.96897 0.86150 1.86511 1.77743 1.55939 1.15388 1.22705 0.98644 0.99150 0.94865 1.21563 0.93715 0.86010 0.97731 1.44374 1.31994 1.00933 1.55736 1.19109 1.11271 0.86125 1.18894 0.90253 1.24800 0.98424 0.97603 0.99668 1.69915 1.28255 1.21553 1.37462 0.86084 0.80077 0.81747 0.77802 1.21627 1.21793 1.20617 1.21783 0.89937 0.88567 0.95935 1.21349 0.94113 0.97777 0.99588 1.20959 0.94090 0.97498 1.01136 0.91279 0.91600 0.91621 0.86116 0.85804 0.86179 0.86257 0.87903 0.87618 0.76285 0.91354 0.90620 0.78568 0.90921 0.90236 0.95669 0.94072 0.93807 0.92999 0.93269 0.85625 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.09 -0.85 5.89 -104.54 -0.62 -1.46 16 3 C -0.12 -1.11 9.68 -39.64 -0.38 -1.49 16 4 C -0.11 -1.08 9.79 -39.19 -0.38 -1.47 16 5 C -0.05 -0.58 5.87 -105.01 -0.62 -1.20 16 6 C -0.13 -1.38 9.52 -37.58 -0.36 -1.74 16 7 C -0.11 -1.25 8.18 -36.22 -0.30 -1.54 16 8 C -0.12 -1.21 6.15 -29.04 -0.18 -1.39 16 9 C 0.52 7.45 7.82 -10.98 -0.09 7.36 16 10 O -0.54 -9.84 16.03 5.56 0.09 -9.75 16 11 N -0.72 -10.18 5.17 -60.29 -0.31 -10.49 16 12 C 0.11 1.76 4.73 -4.04 -0.02 1.74 16 13 C 0.09 1.51 0.92 -88.79 -0.08 1.43 16 14 O -0.55 -9.26 13.10 -35.23 -0.46 -9.72 16 15 C -0.11 -2.01 6.26 -24.59 -0.15 -2.16 16 16 C 0.14 2.82 7.23 -2.53 -0.02 2.80 16 17 N -0.60 -15.09 3.39 -170.08 -0.58 -15.67 16 18 C -0.23 -6.19 10.26 -15.06 -0.15 -6.35 16 19 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 20 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 21 N -0.92 -25.87 10.36 55.49 0.57 -25.29 16 22 Si 0.91 21.73 29.56 -169.99 -5.02 16.71 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.16 3.66 4.16 -3.07 -0.01 3.65 16 27 C -0.11 -1.18 9.40 -39.19 -0.37 -1.55 16 28 C -0.12 -1.14 9.68 -39.64 -0.38 -1.52 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.16 7.87 -52.48 -0.41 0.75 16 35 H 0.12 1.35 6.04 -52.48 -0.32 1.03 16 36 H 0.10 0.99 7.81 -51.93 -0.41 0.59 16 37 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 5.05 7.38 -40.82 -0.30 4.75 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 41 H 0.37 4.92 8.12 45.56 0.37 5.29 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.05 1.30 7.23 -51.93 -0.38 0.93 16 48 H 0.05 1.20 7.28 -51.93 -0.38 0.82 16 49 H 0.13 1.24 6.17 -52.49 -0.32 0.92 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 409.35 15.07 6.17 6.17 Total: -1.00 -33.54 409.35 -10.56 -44.10 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -7.17 Total: 9.54 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -3.84 Total: -5.59 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.31 Total: -51.45 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.37 Total: -19.48 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.54 -10.56 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699909708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.879 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds