Wall clock time and date at job start Wed Apr 1 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38259 * 120.00325 * 2 1 4 4 C 1.38210 * 119.99805 * 180.25065 * 3 2 1 5 5 C 1.38258 * 120.00458 * 359.79079 * 4 3 2 6 6 C 1.38217 * 119.99726 * 359.95275 * 5 4 3 7 7 C 1.38220 * 119.99842 * 179.76049 * 2 1 3 8 8 C 1.50699 * 119.99673 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.99866 * 40.08382 * 8 7 2 10 10 C 1.54329 * 109.99103 * 279.04007 * 8 7 2 11 11 C 1.55154 * 103.02182 * 218.66655 * 10 8 7 12 12 C 1.54910 * 101.58068 * 35.31394 * 11 10 8 13 13 N 1.47028 * 109.87955 * 161.17707 * 8 7 2 14 14 C 1.34777 * 125.65042 * 298.39415 * 13 8 7 15 15 O 1.21352 * 119.99754 * 359.71848 * 14 13 8 16 16 C 1.49441 * 120.00194 * 179.71423 * 14 13 8 17 17 O 1.21352 * 120.00052 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00194 * 179.97438 * 16 14 13 19 19 C 1.46500 * 120.00376 * 180.02562 * 18 16 14 20 20 C 1.52997 * 109.47473 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 18 22 22 C 1.50706 * 109.46735 * 180.02562 * 21 20 19 23 23 H 1.07996 * 119.99928 * 359.97438 * 22 21 20 24 24 C 1.37880 * 119.99611 * 179.97438 * 22 21 20 25 25 N 1.31511 * 120.00327 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99743 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46828 * 90.00241 * 26 24 22 28 28 H 1.48494 * 109.47178 * 209.99936 * 26 24 22 29 29 H 1.48500 * 109.47075 * 330.00183 * 26 24 22 30 30 H 1.09007 * 109.47468 * 270.23929 * 1 2 3 31 31 H 1.09004 * 109.47101 * 30.23316 * 1 2 3 32 32 H 1.08995 * 109.47770 * 150.23186 * 1 2 3 33 33 H 1.08002 * 119.99542 * 0.02562 * 3 2 1 34 34 H 1.08008 * 119.99674 * 179.76731 * 4 3 2 35 35 H 1.07997 * 120.00063 * 179.97438 * 5 4 3 36 36 H 1.07997 * 119.99841 * 180.02562 * 6 5 4 37 37 H 1.09003 * 110.84906 * 100.20326 * 10 8 7 38 38 H 1.08997 * 110.67166 * 337.05192 * 10 8 7 39 39 H 1.08999 * 111.00761 * 277.23236 * 11 10 8 40 40 H 1.09003 * 111.00470 * 153.38517 * 11 10 8 41 41 H 1.09001 * 110.36471 * 204.15213 * 12 11 10 42 42 H 1.08993 * 110.37009 * 81.82585 * 12 11 10 43 43 H 0.97004 * 120.00228 * 0.02562 * 18 16 14 44 44 H 1.09002 * 109.47129 * 59.99747 * 19 18 16 45 45 H 1.08998 * 109.46845 * 300.00553 * 19 18 16 46 46 H 1.09002 * 109.47153 * 59.99757 * 20 19 18 47 47 H 1.09001 * 109.46832 * 299.99948 * 20 19 18 48 48 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 49 49 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 50 50 H 0.97000 * 120.00354 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0052 5 6 4.2717 -0.0002 -0.0061 6 6 3.5805 -1.1971 -0.0007 7 6 2.1980 -1.1970 0.0050 8 6 1.4444 -2.5020 0.0099 9 1 0.5796 -2.4356 -0.6503 10 6 0.9827 -2.8393 1.4433 11 6 1.1861 -4.3754 1.5238 12 6 2.4625 -4.5653 0.6668 13 7 2.3279 -3.5912 -0.4316 14 6 2.9212 -3.6812 -1.6384 15 8 2.7388 -2.8166 -2.4701 16 6 3.8036 -4.8457 -1.9523 17 8 3.9857 -5.7106 -1.1207 18 7 4.3965 -4.9360 -3.1592 19 6 5.2611 -6.0778 -3.4672 20 6 5.8038 -5.9374 -4.8908 21 6 6.7063 -7.1303 -5.2125 22 6 7.2413 -6.9916 -6.6145 23 1 6.9649 -6.1383 -7.2160 24 6 8.0836 -7.9542 -7.1292 25 7 8.4206 -8.9931 -6.3966 26 14 8.7462 -7.7827 -8.8674 27 1 10.0274 -7.0324 -8.8369 28 1 8.9761 -9.1313 -9.4448 29 1 7.7620 -7.0480 -9.7021 30 1 -0.3634 0.0043 1.0277 31 1 -0.3633 0.8879 -0.5175 32 1 -0.3634 -0.8920 -0.5102 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1326 -0.0090 35 1 5.3516 -0.0002 -0.0106 36 1 4.1205 -2.1324 -0.0010 37 1 -0.0671 -2.5816 1.5835 38 1 1.6051 -2.3288 2.1782 39 1 0.3396 -4.9051 1.0869 40 1 1.3553 -4.6937 2.5525 41 1 2.5059 -5.5799 0.2708 42 1 3.3522 -4.3497 1.2583 43 1 4.2507 -4.2449 -3.8242 44 1 4.6868 -7.0007 -3.3862 45 1 6.0924 -6.1044 -2.7627 46 1 6.3782 -5.0146 -4.9713 47 1 4.9726 -5.9107 -5.5954 48 1 7.5375 -7.1575 -4.5079 49 1 6.1315 -8.0529 -5.1321 50 1 9.0135 -9.6701 -6.7586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286687749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:13 Heat of formation + Delta-G solvation = -51.735850 kcal Electronic energy + Delta-G solvation = -29792.488586 eV Core-core repulsion = 25784.135761 eV Total energy + Delta-G solvation = -4008.352825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23094 -39.79433 -38.46966 -37.57518 -35.60678 -33.46313 -33.29055 -31.97213 -31.76625 -31.24449 -28.46614 -27.28583 -27.03284 -25.30521 -23.64547 -22.71574 -21.98297 -21.67225 -20.91614 -20.57435 -19.40550 -17.77864 -17.33628 -17.00749 -16.39831 -16.02918 -15.81130 -15.43040 -15.15654 -15.00417 -14.66399 -14.45874 -14.33647 -14.04629 -13.77628 -13.66948 -13.45587 -13.29473 -13.17585 -12.68479 -12.61176 -12.38012 -12.31953 -11.94280 -11.91294 -11.81795 -11.77843 -11.39240 -11.24051 -11.17430 -10.96415 -10.91376 -10.76423 -10.60474 -9.90798 -9.71041 -9.33786 -9.14343 -9.13289 -8.98763 -8.91214 -8.74973 -8.38429 -6.03182 -4.06120 1.12072 1.19804 1.44334 2.21152 3.21982 3.30847 3.37172 3.40165 3.44851 3.55514 4.13202 4.26174 4.35525 4.43469 4.49515 4.59448 4.66436 4.73123 4.80080 4.91671 5.05096 5.08667 5.24921 5.32801 5.32813 5.36043 5.42489 5.47140 5.52001 5.57829 5.58802 5.62059 5.68382 5.79138 5.80527 5.86212 5.95829 6.07184 6.27378 6.29313 6.32095 6.40276 6.53452 6.70968 6.79769 6.94560 7.00082 7.31739 7.61093 7.71874 7.72696 7.95152 8.06140 8.36482 9.00330 9.58231 11.08080 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.002057 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.185788 B =13608.231080 C =14631.347693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.078 4.078 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.096 4.096 7 C -0.086 4.086 8 C 0.176 3.824 9 H 0.091 0.909 10 C -0.122 4.122 11 C -0.136 4.136 12 C 0.096 3.904 13 N -0.591 5.591 14 C 0.520 3.480 15 O -0.511 6.511 16 C 0.502 3.498 17 O -0.522 6.522 18 N -0.691 5.691 19 C 0.115 3.885 20 C -0.123 4.123 21 C 0.025 3.975 22 C -0.522 4.522 23 H 0.056 0.944 24 C 0.057 3.943 25 N -0.894 5.894 26 Si 0.893 3.107 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.411 0.589 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.020 0.980 49 H 0.020 0.980 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.814 17.756 20.083 32.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.114 4.114 7 C -0.087 4.087 8 C 0.073 3.927 9 H 0.109 0.891 10 C -0.160 4.160 11 C -0.174 4.174 12 C -0.026 4.026 13 N -0.326 5.326 14 C 0.303 3.697 15 O -0.385 6.385 16 C 0.282 3.718 17 O -0.399 6.399 18 N -0.343 5.343 19 C -0.007 4.007 20 C -0.161 4.161 21 C -0.013 4.013 22 C -0.561 4.561 23 H 0.074 0.926 24 C -0.145 4.145 25 N -0.533 5.533 26 Si 0.721 3.279 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.199 1.199 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.247 0.753 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.621 17.397 20.109 31.899 hybrid contribution 0.569 0.382 -1.337 1.503 sum -17.052 17.779 18.772 30.972 Atomic orbital electron populations 1.20860 0.91287 1.03021 1.02241 1.19608 0.95889 0.92320 1.00010 1.20963 0.94256 0.97225 1.01396 1.21120 0.94333 0.97969 1.00135 1.21119 0.99938 0.92444 1.00505 1.20897 0.93572 0.98080 0.98883 1.19764 0.93924 0.93827 1.01188 1.20585 0.91831 0.83826 0.96461 0.89120 1.22694 1.02352 0.96552 0.94380 1.22874 0.98064 0.95472 1.00951 1.22698 0.97837 0.94644 0.87468 1.48316 1.47125 1.23932 1.13198 1.20044 0.81296 0.86944 0.81414 1.90787 1.61012 1.40532 1.46168 1.19923 0.81797 0.86456 0.83591 1.90707 1.61593 1.40767 1.46856 1.46072 1.46924 1.26781 1.14498 1.21837 0.92858 0.87013 0.99004 1.21928 1.00084 1.02211 0.91848 1.19030 0.93862 0.91635 0.96767 1.21199 1.28421 1.07347 0.99098 0.92580 1.25027 0.96388 0.95283 0.97768 1.69959 1.35578 1.10985 1.36785 0.86573 0.79325 0.77337 0.84644 1.20641 1.21204 1.19863 0.91025 0.91450 0.91364 0.86112 0.86158 0.86149 0.86757 0.89540 0.90070 0.90291 0.89355 0.87649 0.90910 0.75341 0.91099 0.91119 0.92446 0.92441 0.96213 0.96195 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.50 36.00 0.34 -0.42 16 2 C -0.08 -0.72 5.88 -104.62 -0.62 -1.34 16 3 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 4 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 5 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 6 C -0.10 -1.12 8.53 -39.58 -0.34 -1.46 16 7 C -0.09 -0.91 4.40 -104.62 -0.46 -1.37 16 8 C 0.18 1.65 2.47 -68.10 -0.17 1.48 16 9 H 0.09 0.86 6.44 -51.93 -0.33 0.53 16 10 C -0.12 -0.76 6.35 -24.89 -0.16 -0.92 16 11 C -0.14 -0.84 7.09 -24.58 -0.17 -1.01 16 12 C 0.10 0.90 6.06 -2.53 -0.02 0.88 16 13 N -0.59 -6.67 2.18 -164.82 -0.36 -7.03 16 14 C 0.52 7.31 6.45 -11.59 -0.07 7.23 16 15 O -0.51 -8.17 16.04 5.49 0.09 -8.08 16 16 C 0.50 7.66 7.86 -11.59 -0.09 7.57 16 17 O -0.52 -8.61 13.78 5.49 0.08 -8.54 16 18 N -0.69 -10.58 5.55 -60.73 -0.34 -10.92 16 19 C 0.11 1.98 5.67 -4.04 -0.02 1.95 16 20 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 21 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 22 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 23 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 24 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 25 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 26 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 0.44 6.14 -51.93 -0.32 0.12 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.11 1.42 6.56 -52.49 -0.34 1.07 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.51 7.84 -51.93 -0.41 0.11 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.11 1.16 6.16 -51.93 -0.32 0.84 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.41 5.86 7.94 -40.82 -0.32 5.54 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 405.51 15.07 6.11 6.11 Total: -1.00 -32.67 405.51 -10.28 -42.96 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.93 Total: 2.42 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -3.65 Total: -7.49 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.04 Total: -43.90 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.16 Total: -16.62 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.67 -10.28 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286687749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.781 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds