Wall clock time and date at job start Wed Apr 1 2020 04:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38259 * 120.00325 * 2 1 4 4 C 1.38210 * 119.99805 * 180.25065 * 3 2 1 5 5 C 1.38258 * 120.00458 * 359.79079 * 4 3 2 6 6 C 1.38217 * 119.99726 * 359.95275 * 5 4 3 7 7 C 1.38220 * 119.99842 * 179.76049 * 2 1 3 8 8 C 1.50699 * 119.99673 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.99866 * 40.08382 * 8 7 2 10 10 C 1.54329 * 109.99103 * 279.04007 * 8 7 2 11 11 C 1.55154 * 103.02182 * 218.66655 * 10 8 7 12 12 C 1.54910 * 101.58068 * 35.31394 * 11 10 8 13 13 N 1.47028 * 109.87955 * 161.17707 * 8 7 2 14 14 C 1.34777 * 125.65042 * 298.39415 * 13 8 7 15 15 O 1.21352 * 119.99754 * 359.71848 * 14 13 8 16 16 C 1.49441 * 120.00194 * 179.71423 * 14 13 8 17 17 O 1.21352 * 120.00052 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00194 * 179.97438 * 16 14 13 19 19 C 1.46500 * 120.00376 * 180.02562 * 18 16 14 20 20 C 1.52997 * 109.47473 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 18 22 22 C 1.50706 * 109.46735 * 180.02562 * 21 20 19 23 23 H 1.07996 * 119.99928 * 359.97438 * 22 21 20 24 24 C 1.37880 * 119.99611 * 179.97438 * 22 21 20 25 25 N 1.31511 * 120.00327 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99743 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46828 * 90.00241 * 26 24 22 28 28 H 1.48494 * 109.47178 * 209.99936 * 26 24 22 29 29 H 1.48500 * 109.47075 * 330.00183 * 26 24 22 30 30 H 1.09007 * 109.47468 * 270.23929 * 1 2 3 31 31 H 1.09004 * 109.47101 * 30.23316 * 1 2 3 32 32 H 1.08995 * 109.47770 * 150.23186 * 1 2 3 33 33 H 1.08002 * 119.99542 * 0.02562 * 3 2 1 34 34 H 1.08008 * 119.99674 * 179.76731 * 4 3 2 35 35 H 1.07997 * 120.00063 * 179.97438 * 5 4 3 36 36 H 1.07997 * 119.99841 * 180.02562 * 6 5 4 37 37 H 1.09003 * 110.84906 * 100.20326 * 10 8 7 38 38 H 1.08997 * 110.67166 * 337.05192 * 10 8 7 39 39 H 1.08999 * 111.00761 * 277.23236 * 11 10 8 40 40 H 1.09003 * 111.00470 * 153.38517 * 11 10 8 41 41 H 1.09001 * 110.36471 * 204.15213 * 12 11 10 42 42 H 1.08993 * 110.37009 * 81.82585 * 12 11 10 43 43 H 0.97004 * 120.00228 * 0.02562 * 18 16 14 44 44 H 1.09002 * 109.47129 * 59.99747 * 19 18 16 45 45 H 1.08998 * 109.46845 * 300.00553 * 19 18 16 46 46 H 1.09002 * 109.47153 * 59.99757 * 20 19 18 47 47 H 1.09001 * 109.46832 * 299.99948 * 20 19 18 48 48 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 49 49 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 50 50 H 0.97000 * 120.00354 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0052 5 6 4.2717 -0.0002 -0.0061 6 6 3.5805 -1.1971 -0.0007 7 6 2.1980 -1.1970 0.0050 8 6 1.4444 -2.5020 0.0099 9 1 0.5796 -2.4356 -0.6503 10 6 0.9827 -2.8393 1.4433 11 6 1.1861 -4.3754 1.5238 12 6 2.4625 -4.5653 0.6668 13 7 2.3279 -3.5912 -0.4316 14 6 2.9212 -3.6812 -1.6384 15 8 2.7388 -2.8166 -2.4701 16 6 3.8036 -4.8457 -1.9523 17 8 3.9857 -5.7106 -1.1207 18 7 4.3965 -4.9360 -3.1592 19 6 5.2611 -6.0778 -3.4672 20 6 5.8038 -5.9374 -4.8908 21 6 6.7063 -7.1303 -5.2125 22 6 7.2413 -6.9916 -6.6145 23 1 6.9649 -6.1383 -7.2160 24 6 8.0836 -7.9542 -7.1292 25 7 8.4206 -8.9931 -6.3966 26 14 8.7462 -7.7827 -8.8674 27 1 10.0274 -7.0324 -8.8369 28 1 8.9761 -9.1313 -9.4448 29 1 7.7620 -7.0480 -9.7021 30 1 -0.3634 0.0043 1.0277 31 1 -0.3633 0.8879 -0.5175 32 1 -0.3634 -0.8920 -0.5102 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1326 -0.0090 35 1 5.3516 -0.0002 -0.0106 36 1 4.1205 -2.1324 -0.0010 37 1 -0.0671 -2.5816 1.5835 38 1 1.6051 -2.3288 2.1782 39 1 0.3396 -4.9051 1.0869 40 1 1.3553 -4.6937 2.5525 41 1 2.5059 -5.5799 0.2708 42 1 3.3522 -4.3497 1.2583 43 1 4.2507 -4.2449 -3.8242 44 1 4.6868 -7.0007 -3.3862 45 1 6.0924 -6.1044 -2.7627 46 1 6.3782 -5.0146 -4.9713 47 1 4.9726 -5.9107 -5.5954 48 1 7.5375 -7.1575 -4.5079 49 1 6.1315 -8.0529 -5.1321 50 1 9.0135 -9.6701 -6.7586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286687749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:12 Heat of formation + Delta-G solvation = -70.153482 kcal Electronic energy + Delta-G solvation = -29793.287235 eV Core-core repulsion = 25784.135761 eV Total energy + Delta-G solvation = -4009.151474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.19374 -40.78039 -39.46807 -38.50438 -37.11332 -35.27450 -34.06777 -33.09512 -32.67790 -32.53529 -29.20462 -28.96669 -27.65459 -26.60610 -24.97875 -23.84627 -22.76632 -22.43795 -22.38221 -21.65048 -20.48762 -18.87784 -18.47377 -18.19879 -17.99906 -17.05378 -16.99357 -16.56077 -16.36019 -16.09410 -15.83280 -15.79484 -15.27116 -14.95864 -14.88865 -14.41202 -14.30517 -14.14061 -14.12276 -13.99192 -13.80003 -13.54687 -13.38820 -13.18918 -12.97914 -12.82269 -12.77389 -12.57305 -12.53769 -12.42217 -12.02299 -11.95234 -11.92457 -11.72953 -11.58236 -11.54812 -11.24739 -10.61911 -10.56258 -10.35454 -9.98466 -9.69447 -9.47367 -8.20838 -6.31785 0.26076 0.40250 0.45052 1.14876 1.40928 1.41816 1.52989 2.04469 2.37144 2.43508 2.79975 3.12934 3.22658 3.52230 3.66849 3.72003 3.93655 4.00808 4.04877 4.10218 4.14487 4.15015 4.23059 4.44153 4.49091 4.49749 4.59478 4.76077 4.77684 4.83603 4.85200 4.88341 4.89233 4.90948 4.97865 5.05483 5.09022 5.11499 5.12336 5.23178 5.29161 5.34204 5.49519 5.55644 5.58911 5.65544 5.68353 5.82540 5.96171 6.09506 6.16715 6.22305 6.58956 6.84576 6.85649 7.37479 8.91049 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.002057 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.185788 B =13608.231080 C =14631.347693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.124 4.124 5 C -0.140 4.140 6 C -0.119 4.119 7 C -0.098 4.098 8 C 0.170 3.830 9 H 0.093 0.907 10 C -0.111 4.111 11 C -0.124 4.124 12 C 0.088 3.912 13 N -0.583 5.583 14 C 0.521 3.479 15 O -0.536 6.536 16 C 0.502 3.498 17 O -0.537 6.537 18 N -0.688 5.688 19 C 0.129 3.871 20 C -0.106 4.106 21 C 0.026 3.974 22 C -0.542 4.542 23 H 0.063 0.937 24 C -0.002 4.002 25 N -0.932 5.932 26 Si 0.965 3.035 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.263 1.263 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.417 0.583 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.066 0.934 48 H -0.004 1.004 49 H -0.003 1.003 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.759 19.645 20.556 34.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.159 4.159 6 C -0.138 4.138 7 C -0.099 4.099 8 C 0.068 3.932 9 H 0.110 0.890 10 C -0.149 4.149 11 C -0.161 4.161 12 C -0.033 4.033 13 N -0.317 5.317 14 C 0.304 3.696 15 O -0.413 6.413 16 C 0.282 3.718 17 O -0.415 6.415 18 N -0.340 5.340 19 C 0.007 3.993 20 C -0.144 4.144 21 C -0.012 4.012 22 C -0.580 4.580 23 H 0.081 0.919 24 C -0.199 4.199 25 N -0.573 5.573 26 Si 0.790 3.210 27 H -0.198 1.198 28 H -0.208 1.208 29 H -0.187 1.187 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.114 0.886 37 H 0.133 0.867 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.129 0.871 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.254 0.746 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.015 0.985 49 H 0.016 0.984 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.592 19.302 20.617 34.373 hybrid contribution 1.168 -0.193 -1.404 1.837 sum -18.424 19.109 19.213 32.768 Atomic orbital electron populations 1.20922 0.89124 1.03485 1.03702 1.19982 0.97549 0.91870 0.99021 1.21337 0.94259 0.98255 1.00436 1.21409 0.94952 0.98220 0.99565 1.21296 1.00423 0.92863 1.01269 1.20900 0.94420 0.97741 1.00708 1.19925 0.93569 0.94881 1.01477 1.20875 0.91126 0.82796 0.98436 0.88970 1.22720 1.03906 0.96285 0.91999 1.22871 0.96228 0.95636 1.01405 1.22829 0.99912 0.93283 0.87322 1.48426 1.46042 1.24726 1.12464 1.19699 0.81439 0.86178 0.82311 1.90766 1.62161 1.41132 1.47222 1.20227 0.81658 0.86733 0.83132 1.90702 1.62097 1.41450 1.47231 1.45894 1.46735 1.26360 1.14986 1.21471 0.92869 0.87588 0.97408 1.21639 0.99391 0.99940 0.93390 1.18924 0.93756 0.93029 0.95471 1.21663 1.28527 1.07564 1.00296 0.91884 1.25983 0.96735 0.94902 1.02321 1.70092 1.36375 1.11898 1.38894 0.85441 0.78861 0.77491 0.79215 1.19841 1.20840 1.18702 0.88927 0.90521 0.91378 0.83660 0.84175 0.85805 0.88597 0.86719 0.89951 0.89458 0.87147 0.89359 0.91120 0.74586 0.91591 0.91767 0.91649 0.91546 0.98531 0.98432 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.50 71.23 0.68 -0.50 16 2 C -0.08 -1.41 5.88 -19.87 -0.12 -1.52 16 3 C -0.13 -2.01 9.70 22.27 0.22 -1.79 16 4 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 5 C -0.14 -3.02 10.05 22.27 0.22 -2.80 16 6 C -0.12 -2.85 8.53 22.27 0.19 -2.66 16 7 C -0.10 -1.99 4.40 -19.87 -0.09 -2.07 16 8 C 0.17 2.97 2.47 44.60 0.11 3.08 16 9 H 0.09 1.61 6.44 -2.39 -0.02 1.59 16 10 C -0.11 -1.10 6.35 31.78 0.20 -0.89 16 11 C -0.12 -1.24 7.09 31.99 0.23 -1.02 16 12 C 0.09 1.63 6.06 86.85 0.53 2.15 16 13 N -0.58 -13.11 2.18 -793.74 -1.73 -14.84 16 14 C 0.52 14.93 6.45 87.27 0.56 15.49 16 15 O -0.54 -17.41 16.04 -3.25 -0.05 -17.47 16 16 C 0.50 15.67 7.86 87.27 0.69 16.35 16 17 O -0.54 -18.20 13.78 -3.25 -0.04 -18.24 16 18 N -0.69 -21.36 5.55 -464.42 -2.58 -23.94 16 19 C 0.13 4.55 5.67 86.38 0.49 5.04 16 20 C -0.11 -4.17 5.27 30.59 0.16 -4.01 16 21 C 0.03 1.34 4.97 29.85 0.15 1.49 16 22 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 23 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 24 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 25 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 26 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 30 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.08 0.65 8.09 -2.38 -0.02 0.63 16 32 H 0.07 0.70 6.14 -2.39 -0.01 0.69 16 33 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.10 2.54 6.56 -2.91 -0.02 2.52 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.08 0.84 7.84 -2.39 -0.02 0.82 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.96 6.16 -2.39 -0.01 1.95 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.42 11.97 7.94 -92.71 -0.74 11.23 16 44 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 49 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 50 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -71.88 405.51 3.25 -68.63 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.21 Total: 21.63 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 5.13 Total: -5.56 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -4.02 Total: -95.23 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.10 Total: -35.71 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.88 3.25 -68.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286687749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.524 kcal (2) G-P(sol) polarization free energy of solvation -71.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds