Wall clock time and date at job start Wed Apr 1 2020 04:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38262 * 120.00060 * 2 1 4 4 C 1.38204 * 120.00476 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99866 * 0.04292 * 4 3 2 6 6 C 1.38220 * 120.00045 * 359.90929 * 5 4 3 7 7 C 1.50702 * 120.00039 * 180.34221 * 6 5 4 8 8 H 1.08999 * 109.87518 * 200.74291 * 7 6 5 9 9 C 1.54323 * 109.87695 * 79.72725 * 7 6 5 10 10 C 1.55166 * 102.94051 * 218.38653 * 9 7 6 11 11 C 1.54907 * 101.57998 * 35.50926 * 10 9 7 12 12 N 1.47018 * 109.88228 * 321.92387 * 7 6 5 13 13 C 1.34779 * 125.64876 * 298.30566 * 12 7 6 14 14 O 1.21351 * 119.99738 * 0.02562 * 13 12 7 15 15 C 1.49451 * 120.00217 * 180.02562 * 13 12 7 16 16 O 1.21344 * 119.99742 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99793 * 179.97438 * 15 13 12 18 18 C 1.46498 * 119.99580 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.46776 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.47174 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.47213 * 179.97438 * 20 19 18 22 22 H 1.07995 * 120.00269 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99935 * 180.02562 * 21 20 19 24 24 N 1.31517 * 119.99927 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99985 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47081 * 89.99943 * 25 23 21 27 27 H 1.48497 * 109.47147 * 210.00252 * 25 23 21 28 28 H 1.48501 * 109.47032 * 330.00030 * 25 23 21 29 29 C 1.38207 * 120.00371 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47201 * 270.02200 * 1 2 3 31 31 H 1.09001 * 109.47460 * 30.02341 * 1 2 3 32 32 H 1.09001 * 109.46884 * 150.02006 * 1 2 3 33 33 H 1.07999 * 119.99755 * 359.97368 * 3 2 1 34 34 H 1.08005 * 120.00182 * 179.97438 * 4 3 2 35 35 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 36 36 H 1.08998 * 110.72909 * 336.75099 * 9 7 6 37 37 H 1.09003 * 110.72170 * 100.03164 * 9 7 6 38 38 H 1.09002 * 110.99956 * 153.57656 * 10 9 7 39 39 H 1.08995 * 111.00690 * 277.39213 * 10 9 7 40 40 H 1.08995 * 110.37267 * 81.82408 * 11 10 9 41 41 H 1.09001 * 110.36411 * 204.15233 * 11 10 9 42 42 H 0.97001 * 119.99820 * 0.02562 * 17 15 13 43 43 H 1.08999 * 109.47261 * 299.99691 * 18 17 15 44 44 H 1.08990 * 109.47473 * 60.00411 * 18 17 15 45 45 H 1.08995 * 109.47617 * 299.99962 * 19 18 17 46 46 H 1.09000 * 109.47325 * 60.00249 * 19 18 17 47 47 H 1.08999 * 109.47274 * 299.99860 * 20 19 18 48 48 H 1.09000 * 109.46579 * 60.00052 * 20 19 18 49 49 H 0.96997 * 119.99631 * 180.02562 * 24 23 21 50 50 H 1.08000 * 120.00334 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0020 6 6 3.5806 -1.1969 -0.0010 7 6 4.3342 -2.5019 0.0053 8 1 3.6906 -3.3032 -0.3577 9 6 4.8158 -2.8229 1.4358 10 6 6.2215 -3.4360 1.1999 11 6 6.7247 -2.6049 -0.0067 12 7 5.5296 -2.3931 -0.8436 13 6 5.5325 -2.1423 -2.1678 14 8 4.4838 -1.9844 -2.7577 15 6 6.8271 -2.0586 -2.9098 16 8 7.8757 -2.2170 -2.3200 17 7 6.8299 -1.8083 -4.2341 18 6 8.0990 -1.7269 -4.9614 19 6 7.8228 -1.4349 -6.4377 20 6 9.1482 -1.3492 -7.1973 21 6 8.8761 -1.0622 -8.6515 22 1 7.8597 -0.9515 -8.9991 23 6 9.9250 -0.9409 -9.5382 24 7 9.6876 -0.6899 -10.8072 25 14 11.6832 -1.1330 -8.9371 26 1 12.0879 -2.5581 -9.0381 27 1 12.5858 -0.3015 -9.7732 28 1 11.7735 -0.6919 -7.5220 29 6 2.1981 -1.1969 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6583 2.1327 -0.0004 34 1 4.1203 2.1329 -0.0010 35 1 5.3517 0.0002 -0.0028 36 1 4.8870 -1.9133 2.0321 37 1 4.1545 -3.5468 1.9121 38 1 6.8624 -3.2898 2.0694 39 1 6.1489 -4.4930 0.9440 40 1 7.1252 -1.6493 0.3314 41 1 7.4820 -3.1601 -0.5603 42 1 5.9916 -1.6821 -4.7056 43 1 8.7080 -0.9267 -4.5410 44 1 8.6308 -2.6740 -4.8714 45 1 7.2135 -2.2347 -6.8586 46 1 7.2912 -0.4876 -6.5275 47 1 9.7571 -0.5491 -6.7764 48 1 9.6802 -2.2963 -7.1076 49 1 10.4255 -0.6049 -11.4310 50 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286790261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:20 Heat of formation + Delta-G solvation = -52.880845 kcal Electronic energy + Delta-G solvation = -29544.604618 eV Core-core repulsion = 25536.202142 eV Total energy + Delta-G solvation = -4008.402476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15349 -39.79053 -38.58726 -37.63179 -35.72237 -33.39113 -33.15850 -32.16055 -31.81982 -31.47098 -28.39513 -27.68280 -27.12417 -25.42386 -23.52130 -22.53065 -22.12421 -21.96879 -20.93646 -20.37388 -19.29484 -17.81092 -17.27729 -17.01061 -16.72306 -16.29512 -15.81899 -15.56510 -15.24307 -15.00530 -14.73492 -14.33122 -14.19913 -13.93333 -13.79566 -13.69936 -13.56070 -13.35797 -13.26278 -12.73265 -12.72522 -12.60218 -12.39870 -12.09244 -11.97653 -11.92711 -11.87974 -11.38975 -11.27557 -11.20031 -11.10557 -11.05310 -10.92288 -10.15636 -9.97128 -9.77783 -9.45601 -9.24354 -9.19156 -9.05112 -8.96884 -8.75271 -8.56539 -6.06842 -4.05796 1.07612 1.17184 1.41207 2.19506 3.18417 3.30012 3.37211 3.38184 3.41093 3.56068 4.09622 4.22931 4.32875 4.43145 4.44617 4.58490 4.64752 4.68099 4.86360 4.90603 5.04548 5.07643 5.22046 5.26752 5.29388 5.34472 5.38850 5.43715 5.46690 5.48084 5.55445 5.56474 5.58691 5.75118 5.79458 5.88143 5.89826 5.92686 6.18550 6.23322 6.32900 6.36057 6.38602 6.55728 6.73651 6.77565 6.96909 7.19450 7.26741 7.33035 7.67692 7.74479 8.00742 8.49658 8.97355 9.54894 11.06381 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.002124 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.553749 B =13179.335885 C =14393.671717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.083 4.083 7 C 0.176 3.824 8 H 0.088 0.912 9 C -0.123 4.123 10 C -0.136 4.136 11 C 0.096 3.904 12 N -0.589 5.589 13 C 0.521 3.479 14 O -0.510 6.510 15 C 0.504 3.496 16 O -0.523 6.523 17 N -0.691 5.691 18 C 0.113 3.887 19 C -0.115 4.115 20 C -0.010 4.010 21 C -0.522 4.522 22 H 0.072 0.928 23 C 0.066 3.934 24 N -0.902 5.902 25 Si 0.880 3.120 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.265 1.265 29 C -0.105 4.105 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.412 0.588 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.019 0.981 48 H 0.015 0.985 49 H 0.263 0.737 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.830 -2.462 30.736 34.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.132 4.132 5 C -0.127 4.127 6 C -0.084 4.084 7 C 0.073 3.927 8 H 0.106 0.894 9 C -0.160 4.160 10 C -0.174 4.174 11 C -0.026 4.026 12 N -0.324 5.324 13 C 0.304 3.696 14 O -0.385 6.385 15 C 0.284 3.716 16 O -0.401 6.401 17 N -0.343 5.343 18 C -0.009 4.009 19 C -0.153 4.153 20 C -0.048 4.048 21 C -0.560 4.560 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.541 5.541 25 Si 0.708 3.292 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.189 1.189 29 C -0.123 4.123 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.248 0.752 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.037 0.963 48 H 0.033 0.967 49 H 0.073 0.927 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.535 -2.443 30.532 33.903 hybrid contribution 0.622 0.085 -0.191 0.657 sum -13.912 -2.359 30.341 33.462 Atomic orbital electron populations 1.20783 0.91156 1.02925 1.02164 1.19868 0.96044 0.93057 0.99632 1.21027 0.94237 0.97501 1.01084 1.21107 0.94354 0.97912 0.99878 1.20884 0.99706 0.91959 1.00171 1.19929 0.93733 0.94524 1.00181 1.20561 0.86495 0.94837 0.90787 0.89418 1.22730 0.97174 1.01991 0.94147 1.22879 0.96152 1.00051 0.98310 1.22698 0.87899 1.00703 0.91334 1.48311 1.08588 1.69100 1.06387 1.19997 0.89957 0.78177 0.81431 1.90784 1.33045 1.47763 1.66880 1.19933 0.89074 0.79006 0.83550 1.90697 1.32873 1.48944 1.67538 1.46016 1.12038 1.68827 1.07431 1.21834 0.83742 1.02226 0.93141 1.21743 1.01291 1.01747 0.90551 1.19502 0.92384 0.96670 0.96245 1.21089 0.95257 1.48905 0.90789 0.90940 1.25037 0.99229 0.94511 0.94754 1.69915 1.32071 1.49354 1.02747 0.86769 0.84800 0.78379 0.79295 1.20245 1.21361 1.18924 1.20781 0.93083 0.97674 1.00777 0.91260 0.91522 0.91492 0.86196 0.86092 0.86605 0.89999 0.89521 0.89377 0.90298 0.90960 0.87712 0.75175 0.91147 0.91128 0.91824 0.91814 0.96252 0.96682 0.92684 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.09 -0.79 5.88 -104.63 -0.62 -1.40 16 3 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 4 C -0.11 -1.13 10.05 -39.59 -0.40 -1.53 16 5 C -0.11 -1.16 9.14 -39.58 -0.36 -1.52 16 6 C -0.08 -0.84 4.09 -104.62 -0.43 -1.27 16 7 C 0.18 1.60 3.05 -68.11 -0.21 1.39 16 8 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 9 C -0.12 -0.73 6.46 -24.89 -0.16 -0.89 16 10 C -0.14 -0.79 7.09 -24.58 -0.17 -0.97 16 11 C 0.10 0.86 6.06 -2.53 -0.02 0.84 16 12 N -0.59 -6.44 2.30 -164.83 -0.38 -6.82 16 13 C 0.52 7.20 7.53 -11.58 -0.09 7.11 16 14 O -0.51 -8.10 16.32 5.50 0.09 -8.01 16 15 C 0.50 7.45 7.86 -11.58 -0.09 7.36 16 16 O -0.52 -8.30 13.78 5.50 0.08 -8.22 16 17 N -0.69 -10.21 5.55 -60.74 -0.34 -10.54 16 18 C 0.11 1.82 5.67 -4.04 -0.02 1.80 16 19 C -0.12 -2.16 5.27 -26.73 -0.14 -2.30 16 20 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 21 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 22 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 23 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 24 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 25 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 29 C -0.10 -1.00 9.33 -39.59 -0.37 -1.37 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.12 1.22 7.67 -52.49 -0.40 0.82 16 36 H 0.08 0.49 7.82 -51.93 -0.41 0.08 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 1.10 6.16 -51.93 -0.32 0.78 16 42 H 0.41 5.73 7.94 -40.82 -0.32 5.40 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 48 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.12 0.95 8.05 -52.49 -0.42 0.53 16 LS Contribution 408.80 15.07 6.16 6.16 Total: -1.00 -33.30 408.80 -10.06 -43.36 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.14 Total: 2.36 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.64 Total: -8.24 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.06 Total: -44.35 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.17 Total: -16.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.30 -10.06 -43.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286790261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.521 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds