Wall clock time and date at job start Wed Apr 1 2020 04:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38262 * 120.00060 * 2 1 4 4 C 1.38204 * 120.00476 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99866 * 0.04292 * 4 3 2 6 6 C 1.38220 * 120.00045 * 359.90929 * 5 4 3 7 7 C 1.50702 * 120.00039 * 180.34221 * 6 5 4 8 8 H 1.08999 * 109.87518 * 200.74291 * 7 6 5 9 9 C 1.54323 * 109.87695 * 79.72725 * 7 6 5 10 10 C 1.55166 * 102.94051 * 218.38653 * 9 7 6 11 11 C 1.54907 * 101.57998 * 35.50926 * 10 9 7 12 12 N 1.47018 * 109.88228 * 321.92387 * 7 6 5 13 13 C 1.34779 * 125.64876 * 298.30566 * 12 7 6 14 14 O 1.21351 * 119.99738 * 0.02562 * 13 12 7 15 15 C 1.49451 * 120.00217 * 180.02562 * 13 12 7 16 16 O 1.21344 * 119.99742 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99793 * 179.97438 * 15 13 12 18 18 C 1.46498 * 119.99580 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.46776 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.47174 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.47213 * 179.97438 * 20 19 18 22 22 H 1.07995 * 120.00269 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99935 * 180.02562 * 21 20 19 24 24 N 1.31517 * 119.99927 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99985 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47081 * 89.99943 * 25 23 21 27 27 H 1.48497 * 109.47147 * 210.00252 * 25 23 21 28 28 H 1.48501 * 109.47032 * 330.00030 * 25 23 21 29 29 C 1.38207 * 120.00371 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47201 * 270.02200 * 1 2 3 31 31 H 1.09001 * 109.47460 * 30.02341 * 1 2 3 32 32 H 1.09001 * 109.46884 * 150.02006 * 1 2 3 33 33 H 1.07999 * 119.99755 * 359.97368 * 3 2 1 34 34 H 1.08005 * 120.00182 * 179.97438 * 4 3 2 35 35 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 36 36 H 1.08998 * 110.72909 * 336.75099 * 9 7 6 37 37 H 1.09003 * 110.72170 * 100.03164 * 9 7 6 38 38 H 1.09002 * 110.99956 * 153.57656 * 10 9 7 39 39 H 1.08995 * 111.00690 * 277.39213 * 10 9 7 40 40 H 1.08995 * 110.37267 * 81.82408 * 11 10 9 41 41 H 1.09001 * 110.36411 * 204.15233 * 11 10 9 42 42 H 0.97001 * 119.99820 * 0.02562 * 17 15 13 43 43 H 1.08999 * 109.47261 * 299.99691 * 18 17 15 44 44 H 1.08990 * 109.47473 * 60.00411 * 18 17 15 45 45 H 1.08995 * 109.47617 * 299.99962 * 19 18 17 46 46 H 1.09000 * 109.47325 * 60.00249 * 19 18 17 47 47 H 1.08999 * 109.47274 * 299.99860 * 20 19 18 48 48 H 1.09000 * 109.46579 * 60.00052 * 20 19 18 49 49 H 0.96997 * 119.99631 * 180.02562 * 24 23 21 50 50 H 1.08000 * 120.00334 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0020 6 6 3.5806 -1.1969 -0.0010 7 6 4.3342 -2.5019 0.0053 8 1 3.6906 -3.3032 -0.3577 9 6 4.8158 -2.8229 1.4358 10 6 6.2215 -3.4360 1.1999 11 6 6.7247 -2.6049 -0.0067 12 7 5.5296 -2.3931 -0.8436 13 6 5.5325 -2.1423 -2.1678 14 8 4.4838 -1.9844 -2.7577 15 6 6.8271 -2.0586 -2.9098 16 8 7.8757 -2.2170 -2.3200 17 7 6.8299 -1.8083 -4.2341 18 6 8.0990 -1.7269 -4.9614 19 6 7.8228 -1.4349 -6.4377 20 6 9.1482 -1.3492 -7.1973 21 6 8.8761 -1.0622 -8.6515 22 1 7.8597 -0.9515 -8.9991 23 6 9.9250 -0.9409 -9.5382 24 7 9.6876 -0.6899 -10.8072 25 14 11.6832 -1.1330 -8.9371 26 1 12.0879 -2.5581 -9.0381 27 1 12.5858 -0.3015 -9.7732 28 1 11.7735 -0.6919 -7.5220 29 6 2.1981 -1.1969 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6583 2.1327 -0.0004 34 1 4.1203 2.1329 -0.0010 35 1 5.3517 0.0002 -0.0028 36 1 4.8870 -1.9133 2.0321 37 1 4.1545 -3.5468 1.9121 38 1 6.8624 -3.2898 2.0694 39 1 6.1489 -4.4930 0.9440 40 1 7.1252 -1.6493 0.3314 41 1 7.4820 -3.1601 -0.5603 42 1 5.9916 -1.6821 -4.7056 43 1 8.7080 -0.9267 -4.5410 44 1 8.6308 -2.6740 -4.8714 45 1 7.2135 -2.2347 -6.8586 46 1 7.2912 -0.4876 -6.5275 47 1 9.7571 -0.5491 -6.7764 48 1 9.6802 -2.2963 -7.1076 49 1 10.4255 -0.6049 -11.4310 50 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286790261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:19 Heat of formation + Delta-G solvation = -72.228541 kcal Electronic energy + Delta-G solvation = -29545.443597 eV Core-core repulsion = 25536.202142 eV Total energy + Delta-G solvation = -4009.241455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.09708 -40.70728 -39.52061 -38.54491 -37.13700 -35.21909 -33.83021 -33.34843 -32.91161 -32.50133 -29.39485 -29.01927 -27.74332 -26.61848 -24.78335 -23.52570 -23.01453 -22.58047 -22.32785 -21.55628 -20.30032 -19.05473 -18.61911 -18.14832 -17.92666 -17.18463 -16.95929 -16.66792 -16.22953 -16.06070 -15.84700 -15.77242 -15.17192 -14.88622 -14.80892 -14.77926 -14.40070 -14.25722 -14.16046 -13.97642 -13.83300 -13.64842 -13.40021 -13.20091 -13.00021 -12.84556 -12.73709 -12.70094 -12.56751 -12.02068 -11.98025 -11.91873 -11.86345 -11.78385 -11.63246 -11.61272 -11.35068 -10.76410 -10.63095 -10.33436 -9.99011 -9.71098 -9.48259 -8.29272 -6.33909 0.26998 0.37431 0.44819 1.19000 1.37718 1.39392 1.51258 2.06692 2.36718 2.40816 2.80364 3.06254 3.24212 3.53454 3.65810 3.70697 3.93233 3.99168 4.00612 4.12611 4.14685 4.18113 4.26937 4.45218 4.46735 4.49759 4.53617 4.71079 4.77908 4.82247 4.83346 4.83959 4.88106 4.90228 4.96907 4.99478 5.05900 5.09092 5.14083 5.22473 5.27799 5.30314 5.44058 5.50954 5.53322 5.60133 5.64120 5.66303 5.97648 6.08550 6.19348 6.26972 6.59508 6.74283 6.86803 7.30695 8.87332 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.002124 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.553749 B =13179.335885 C =14393.671717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.091 4.091 7 C 0.170 3.830 8 H 0.088 0.912 9 C -0.112 4.112 10 C -0.124 4.124 11 C 0.089 3.911 12 N -0.581 5.581 13 C 0.520 3.480 14 O -0.539 6.539 15 C 0.505 3.495 16 O -0.534 6.534 17 N -0.690 5.690 18 C 0.126 3.874 19 C -0.105 4.105 20 C -0.010 4.010 21 C -0.533 4.533 22 H 0.033 0.967 23 C 0.001 3.999 24 N -0.952 5.952 25 Si 0.951 3.049 26 H -0.266 1.266 27 H -0.286 1.286 28 H -0.244 1.244 29 C -0.118 4.118 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.416 0.584 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.025 0.975 48 H 0.025 0.975 49 H 0.266 0.734 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.557 -3.189 33.764 36.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.144 4.144 5 C -0.145 4.145 6 C -0.092 4.092 7 C 0.067 3.933 8 H 0.106 0.894 9 C -0.150 4.150 10 C -0.162 4.162 11 C -0.032 4.032 12 N -0.314 5.314 13 C 0.302 3.698 14 O -0.416 6.416 15 C 0.285 3.715 16 O -0.412 6.412 17 N -0.342 5.342 18 C 0.004 3.996 19 C -0.143 4.143 20 C -0.048 4.048 21 C -0.571 4.571 22 H 0.052 0.948 23 C -0.195 4.195 24 N -0.592 5.592 25 Si 0.775 3.225 26 H -0.191 1.191 27 H -0.212 1.212 28 H -0.167 1.167 29 C -0.136 4.136 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.253 0.747 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.044 0.956 48 H 0.043 0.957 49 H 0.075 0.925 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.272 -3.181 33.616 36.658 hybrid contribution 0.435 0.335 -1.138 1.264 sum -13.837 -2.846 32.478 35.417 Atomic orbital electron populations 1.20823 0.89377 1.03396 1.03245 1.20237 0.97501 0.92885 0.98696 1.21307 0.94184 0.98478 1.00948 1.21342 0.94982 0.98234 0.99885 1.20947 0.99548 0.92628 1.01426 1.20084 0.94216 0.94733 1.00147 1.20824 0.85808 0.94423 0.92218 0.89446 1.22738 0.97478 1.02726 0.92045 1.22873 0.96152 0.99687 0.97461 1.22843 0.87052 1.01256 0.92090 1.48430 1.10236 1.67079 1.05696 1.19779 0.89011 0.78576 0.82392 1.90767 1.33499 1.49638 1.67705 1.20139 0.89468 0.78485 0.83364 1.90692 1.33379 1.49402 1.67753 1.45908 1.11724 1.68970 1.07640 1.21540 0.84296 1.02447 0.91337 1.21522 0.99042 1.01752 0.91942 1.19452 0.94766 0.97068 0.93481 1.21466 0.93646 1.48326 0.93674 0.94843 1.26053 1.04490 0.94221 0.94766 1.70073 1.33711 1.51082 1.04358 0.85638 0.78377 0.78842 0.79688 1.19118 1.21156 1.16702 1.21041 0.93086 0.98581 1.00908 0.89783 0.90954 0.91129 0.84497 0.85073 0.87227 0.89760 0.87201 0.87114 0.89645 0.90784 0.89220 0.74724 0.90959 0.90731 0.91910 0.92048 0.95638 0.95684 0.92512 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.23 0.71 -0.58 16 2 C -0.09 -1.61 5.88 -19.87 -0.12 -1.72 16 3 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 4 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 5 C -0.13 -2.68 9.14 22.27 0.20 -2.47 16 6 C -0.09 -1.79 4.09 -19.86 -0.08 -1.87 16 7 C 0.17 2.86 3.05 44.60 0.14 3.00 16 8 H 0.09 1.49 8.03 -2.39 -0.02 1.47 16 9 C -0.11 -1.06 6.46 31.79 0.21 -0.85 16 10 C -0.12 -1.12 7.09 31.99 0.23 -0.90 16 11 C 0.09 1.48 6.06 86.85 0.53 2.01 16 12 N -0.58 -12.29 2.30 -793.75 -1.83 -14.12 16 13 C 0.52 14.27 7.53 87.27 0.66 14.92 16 14 O -0.54 -17.22 16.32 -3.25 -0.05 -17.27 16 15 C 0.50 14.68 7.86 87.27 0.69 15.37 16 16 O -0.53 -16.54 13.78 -3.23 -0.04 -16.58 16 17 N -0.69 -20.01 5.55 -464.43 -2.58 -22.58 16 18 C 0.13 3.94 5.67 86.38 0.49 4.43 16 19 C -0.10 -3.86 5.27 30.60 0.16 -3.70 16 20 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 21 C -0.53 -30.55 9.66 25.60 0.25 -30.30 16 22 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 23 C 0.00 0.08 5.47 84.65 0.46 0.54 16 24 N -0.95 -59.96 13.96 21.45 0.30 -59.67 16 25 Si 0.95 44.07 27.47 68.60 1.88 45.96 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 28 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 29 C -0.12 -2.15 9.33 22.27 0.21 -1.94 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 32 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 33 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.11 2.33 7.67 -2.91 -0.02 2.31 16 36 H 0.08 0.80 7.82 -2.39 -0.02 0.78 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.80 6.16 -2.39 -0.01 1.79 16 42 H 0.42 11.51 7.94 -92.71 -0.74 10.78 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 48 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 49 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 50 H 0.13 1.94 8.05 -2.91 -0.02 1.92 16 Total: -1.00 -72.99 408.80 3.11 -69.88 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.14 Total: 23.10 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 5.29 Total: -8.73 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -4.11 Total: -96.37 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.10 Total: -33.85 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.96 kcal Total: -72.99 3.11 -69.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286790261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.344 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds