Wall clock time and date at job start Wed Apr 1 2020 04:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38251 * 119.99677 * 2 1 4 4 C 1.38219 * 119.99780 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99738 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00153 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99907 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.87450 * 158.98273 * 7 6 5 9 9 C 1.54324 * 109.88130 * 280.00212 * 7 6 5 10 10 C 1.55156 * 102.94374 * 141.61293 * 9 7 6 11 11 C 1.54906 * 101.61451 * 324.47489 * 10 9 7 12 12 N 1.47019 * 109.88388 * 37.81060 * 7 6 5 13 13 C 1.34776 * 125.65091 * 61.67191 * 12 7 6 14 14 O 1.21351 * 119.99652 * 0.02562 * 13 12 7 15 15 C 1.49455 * 120.00049 * 180.02562 * 13 12 7 16 16 O 1.21346 * 119.99881 * 0.02562 * 15 13 12 17 17 N 1.34771 * 119.99702 * 180.02562 * 15 13 12 18 18 C 1.46505 * 119.99916 * 180.02562 * 17 15 13 19 19 C 1.52995 * 109.47282 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47355 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47332 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99698 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00063 * 180.02562 * 21 20 19 24 24 N 1.31511 * 119.99934 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00037 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47369 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47332 * 120.00222 * 25 23 21 28 28 H 1.48498 * 109.47174 * 239.99770 * 25 23 21 29 29 C 1.38212 * 119.99819 * 180.27452 * 2 1 3 30 30 H 1.09002 * 109.47197 * 90.00325 * 1 2 3 31 31 H 1.09002 * 109.47074 * 210.00016 * 1 2 3 32 32 H 1.08992 * 109.47124 * 330.00106 * 1 2 3 33 33 H 1.08000 * 120.00399 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.99928 * 179.97438 * 4 3 2 35 35 H 1.08004 * 119.99737 * 179.97438 * 5 4 3 36 36 H 1.09001 * 110.72057 * 23.24170 * 9 7 6 37 37 H 1.09002 * 110.72043 * 259.97039 * 9 7 6 38 38 H 1.09002 * 111.00677 * 82.57073 * 10 9 7 39 39 H 1.09002 * 111.00564 * 206.38331 * 10 9 7 40 40 H 1.09008 * 110.36767 * 155.86672 * 11 10 9 41 41 H 1.08997 * 110.36995 * 278.19392 * 11 10 9 42 42 H 0.97005 * 120.00479 * 359.97438 * 17 15 13 43 43 H 1.09006 * 109.46927 * 299.99546 * 18 17 15 44 44 H 1.08999 * 109.46982 * 59.99490 * 18 17 15 45 45 H 1.08998 * 109.47165 * 300.00059 * 19 18 17 46 46 H 1.09001 * 109.47007 * 59.99531 * 19 18 17 47 47 H 1.08998 * 109.47292 * 300.00300 * 20 19 18 48 48 H 1.09001 * 109.47186 * 59.99959 * 20 19 18 49 49 H 0.97008 * 120.00097 * 180.02562 * 24 23 21 50 50 H 1.08002 * 120.00721 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 4.3342 -2.5020 0.0000 8 1 3.6909 -3.3015 0.3677 9 6 4.8143 -2.8302 -1.4295 10 6 6.2202 -3.4421 -1.1920 11 6 6.7257 -2.6053 0.0096 12 7 5.5305 -2.3891 0.8471 13 6 5.5347 -2.1314 2.1700 14 8 4.4866 -1.9711 2.7602 15 6 6.8302 -2.0432 2.9099 16 8 7.8783 -2.2030 2.3195 17 7 6.8344 -1.7860 4.2329 18 6 8.1044 -1.6989 4.9581 19 6 7.8298 -1.3996 6.4332 20 6 9.1560 -1.3093 7.1908 21 6 8.8856 -1.0139 8.6436 22 1 7.8694 -0.9022 8.9918 23 6 9.9354 -0.8862 9.5281 24 7 11.1728 -1.0217 9.1039 25 14 9.6002 -0.5208 11.3291 26 1 8.1353 -0.4149 11.5484 27 1 10.1487 -1.6172 12.1672 28 1 10.2501 0.7608 11.7035 29 6 2.1981 -1.1970 -0.0057 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1327 0.0001 35 1 5.3517 0.0000 0.0005 36 1 4.8848 -1.9235 -2.0304 37 1 4.1525 -3.5564 -1.9015 38 1 6.1477 -4.4977 -0.9301 39 1 6.8600 -3.3010 -2.0631 40 1 7.4838 -3.1579 0.5646 41 1 7.1258 -1.6514 -0.3340 42 1 5.9967 -1.6578 4.7048 43 1 8.6375 -2.6458 4.8723 44 1 8.7117 -0.9001 4.5326 45 1 7.2969 -0.4527 6.5187 46 1 7.2222 -2.1982 6.8589 47 1 9.6886 -2.2564 7.1052 48 1 9.7639 -0.5109 6.7651 49 1 11.9115 -0.9323 9.7264 50 1 1.6582 -2.1323 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286790263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:24 Heat of formation + Delta-G solvation = -56.662547 kcal Electronic energy + Delta-G solvation = -29489.295602 eV Core-core repulsion = 25480.729140 eV Total energy + Delta-G solvation = -4008.566463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10764 -39.74465 -38.53790 -37.58864 -35.59962 -33.38242 -33.14023 -32.12938 -31.78558 -31.23770 -28.36249 -27.27718 -27.10414 -25.31625 -23.56218 -22.55819 -22.16390 -21.94129 -20.88145 -20.45918 -19.25052 -17.72854 -17.23534 -16.96953 -16.40350 -16.22782 -15.73951 -15.45347 -15.21509 -14.93661 -14.62668 -14.45268 -14.19779 -14.02822 -13.77484 -13.62500 -13.51706 -13.32807 -13.22316 -12.69576 -12.58305 -12.37723 -12.32522 -11.92816 -11.90488 -11.81229 -11.77715 -11.36466 -11.24011 -11.16064 -11.02559 -10.93056 -10.76123 -10.57824 -9.90719 -9.71121 -9.34208 -9.15125 -9.11845 -8.98803 -8.92864 -8.72872 -8.38619 -6.03161 -4.05977 1.09626 1.18870 1.46817 2.24704 3.24277 3.29958 3.37507 3.40824 3.42880 3.59568 4.13258 4.26029 4.35835 4.43684 4.50699 4.60127 4.66707 4.71106 4.88787 4.92779 5.07463 5.09158 5.24042 5.30247 5.32932 5.37304 5.40998 5.48915 5.51243 5.57387 5.59495 5.62837 5.69068 5.78078 5.81869 5.90167 5.93176 6.07829 6.25161 6.30107 6.34861 6.38051 6.54035 6.71676 6.79356 6.95060 7.01670 7.33307 7.61581 7.72998 7.73691 7.95382 8.07743 8.36761 9.00720 9.58427 11.08132 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.002061 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.298855 B =13581.664558 C =14931.996605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.121 4.121 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.082 4.082 7 C 0.176 3.824 8 H 0.088 0.912 9 C -0.122 4.122 10 C -0.136 4.136 11 C 0.096 3.904 12 N -0.589 5.589 13 C 0.522 3.478 14 O -0.512 6.512 15 C 0.503 3.497 16 O -0.523 6.523 17 N -0.691 5.691 18 C 0.115 3.885 19 C -0.123 4.123 20 C 0.024 3.976 21 C -0.521 4.521 22 H 0.056 0.944 23 C 0.056 3.944 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 C -0.105 4.105 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.411 0.589 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.954 -1.758 -26.718 32.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.132 4.132 5 C -0.127 4.127 6 C -0.083 4.083 7 C 0.073 3.927 8 H 0.106 0.894 9 C -0.160 4.160 10 C -0.174 4.174 11 C -0.026 4.026 12 N -0.324 5.324 13 C 0.305 3.695 14 O -0.386 6.386 15 C 0.283 3.717 16 O -0.400 6.400 17 N -0.343 5.343 18 C -0.007 4.007 19 C -0.161 4.161 20 C -0.013 4.013 21 C -0.560 4.560 22 H 0.075 0.925 23 C -0.145 4.145 24 N -0.533 5.533 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 C -0.124 4.124 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.246 0.754 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.563 -1.767 -26.631 31.950 hybrid contribution -0.382 0.375 1.328 1.432 sum -17.945 -1.393 -25.302 31.051 Atomic orbital electron populations 1.20783 0.91179 1.02895 1.02152 1.19864 0.96024 0.93065 0.99673 1.21024 0.94238 0.97483 1.01145 1.21111 0.94345 0.97920 0.99857 1.20890 0.99741 0.91956 1.00120 1.19931 0.93723 0.94548 1.00102 1.20558 0.86507 0.94782 0.90849 0.89443 1.22728 0.97196 1.01955 0.94160 1.22879 0.96119 1.00030 0.98369 1.22722 0.87902 1.00664 0.91334 1.48340 1.08560 1.68987 1.06530 1.20038 0.90007 0.78087 0.81406 1.90776 1.33160 1.47896 1.66813 1.19922 0.89022 0.79143 0.83595 1.90701 1.32901 1.48969 1.67417 1.46070 1.12099 1.68600 1.07533 1.21834 0.83440 1.02272 0.93155 1.21927 1.02321 1.00891 0.90940 1.19035 0.90294 0.97642 0.94363 1.21237 0.92839 1.48501 0.93394 0.92526 1.25030 0.95138 0.95386 0.98963 1.69974 0.98284 1.50100 1.34943 0.86517 0.78376 0.77901 0.85091 1.19728 1.20993 1.20999 1.20779 0.93089 0.97658 1.00833 0.91270 0.91509 0.91544 0.86215 0.86089 0.86572 0.90010 0.89544 0.90306 0.89371 0.87659 0.90938 0.75352 0.91107 0.91134 0.92449 0.92444 0.96192 0.96201 0.92982 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.09 -0.80 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 4 C -0.11 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.11 -1.18 9.14 -39.59 -0.36 -1.54 16 6 C -0.08 -0.85 4.09 -104.62 -0.43 -1.28 16 7 C 0.18 1.64 3.05 -68.10 -0.21 1.44 16 8 H 0.09 0.82 8.04 -51.93 -0.42 0.40 16 9 C -0.12 -0.76 6.47 -24.90 -0.16 -0.92 16 10 C -0.14 -0.84 7.08 -24.58 -0.17 -1.01 16 11 C 0.10 0.90 6.07 -2.47 -0.01 0.88 16 12 N -0.59 -6.67 2.30 -164.73 -0.38 -7.05 16 13 C 0.52 7.42 7.52 -11.58 -0.09 7.34 16 14 O -0.51 -8.30 16.32 5.50 0.09 -8.21 16 15 C 0.50 7.75 7.86 -11.59 -0.09 7.66 16 16 O -0.52 -8.69 13.78 5.50 0.08 -8.61 16 17 N -0.69 -10.70 5.55 -60.73 -0.34 -11.04 16 18 C 0.11 1.99 5.67 -4.04 -0.02 1.97 16 19 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 20 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 21 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 22 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 25 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 C -0.11 -1.03 9.33 -39.58 -0.37 -1.39 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.26 7.66 -52.48 -0.40 0.86 16 36 H 0.08 0.51 7.82 -51.93 -0.41 0.10 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 1.16 6.16 -51.92 -0.32 0.84 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.41 5.94 7.95 -40.82 -0.32 5.61 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.12 0.97 8.05 -52.49 -0.42 0.54 16 LS Contribution 412.41 15.07 6.21 6.21 Total: -1.00 -32.78 412.41 -10.44 -43.22 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.17 Total: 2.13 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.65 Total: -7.24 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.02 Total: -44.07 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.17 Total: -16.82 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.78 -10.44 -43.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286790263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.445 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds