Wall clock time and date at job start Wed Apr 1 2020 04:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38251 * 119.99677 * 2 1 4 4 C 1.38219 * 119.99780 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99738 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00153 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99907 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.87450 * 158.98273 * 7 6 5 9 9 C 1.54324 * 109.88130 * 280.00212 * 7 6 5 10 10 C 1.55156 * 102.94374 * 141.61293 * 9 7 6 11 11 C 1.54906 * 101.61451 * 324.47489 * 10 9 7 12 12 N 1.47019 * 109.88388 * 37.81060 * 7 6 5 13 13 C 1.34776 * 125.65091 * 61.67191 * 12 7 6 14 14 O 1.21351 * 119.99652 * 0.02562 * 13 12 7 15 15 C 1.49455 * 120.00049 * 180.02562 * 13 12 7 16 16 O 1.21346 * 119.99881 * 0.02562 * 15 13 12 17 17 N 1.34771 * 119.99702 * 180.02562 * 15 13 12 18 18 C 1.46505 * 119.99916 * 180.02562 * 17 15 13 19 19 C 1.52995 * 109.47282 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47355 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47332 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99698 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00063 * 180.02562 * 21 20 19 24 24 N 1.31511 * 119.99934 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00037 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47369 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47332 * 120.00222 * 25 23 21 28 28 H 1.48498 * 109.47174 * 239.99770 * 25 23 21 29 29 C 1.38212 * 119.99819 * 180.27452 * 2 1 3 30 30 H 1.09002 * 109.47197 * 90.00325 * 1 2 3 31 31 H 1.09002 * 109.47074 * 210.00016 * 1 2 3 32 32 H 1.08992 * 109.47124 * 330.00106 * 1 2 3 33 33 H 1.08000 * 120.00399 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.99928 * 179.97438 * 4 3 2 35 35 H 1.08004 * 119.99737 * 179.97438 * 5 4 3 36 36 H 1.09001 * 110.72057 * 23.24170 * 9 7 6 37 37 H 1.09002 * 110.72043 * 259.97039 * 9 7 6 38 38 H 1.09002 * 111.00677 * 82.57073 * 10 9 7 39 39 H 1.09002 * 111.00564 * 206.38331 * 10 9 7 40 40 H 1.09008 * 110.36767 * 155.86672 * 11 10 9 41 41 H 1.08997 * 110.36995 * 278.19392 * 11 10 9 42 42 H 0.97005 * 120.00479 * 359.97438 * 17 15 13 43 43 H 1.09006 * 109.46927 * 299.99546 * 18 17 15 44 44 H 1.08999 * 109.46982 * 59.99490 * 18 17 15 45 45 H 1.08998 * 109.47165 * 300.00059 * 19 18 17 46 46 H 1.09001 * 109.47007 * 59.99531 * 19 18 17 47 47 H 1.08998 * 109.47292 * 300.00300 * 20 19 18 48 48 H 1.09001 * 109.47186 * 59.99959 * 20 19 18 49 49 H 0.97008 * 120.00097 * 180.02562 * 24 23 21 50 50 H 1.08002 * 120.00721 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 4.3342 -2.5020 0.0000 8 1 3.6909 -3.3015 0.3677 9 6 4.8143 -2.8302 -1.4295 10 6 6.2202 -3.4421 -1.1920 11 6 6.7257 -2.6053 0.0096 12 7 5.5305 -2.3891 0.8471 13 6 5.5347 -2.1314 2.1700 14 8 4.4866 -1.9711 2.7602 15 6 6.8302 -2.0432 2.9099 16 8 7.8783 -2.2030 2.3195 17 7 6.8344 -1.7860 4.2329 18 6 8.1044 -1.6989 4.9581 19 6 7.8298 -1.3996 6.4332 20 6 9.1560 -1.3093 7.1908 21 6 8.8856 -1.0139 8.6436 22 1 7.8694 -0.9022 8.9918 23 6 9.9354 -0.8862 9.5281 24 7 11.1728 -1.0217 9.1039 25 14 9.6002 -0.5208 11.3291 26 1 8.1353 -0.4149 11.5484 27 1 10.1487 -1.6172 12.1672 28 1 10.2501 0.7608 11.7035 29 6 2.1981 -1.1970 -0.0057 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1327 0.0001 35 1 5.3517 0.0000 0.0005 36 1 4.8848 -1.9235 -2.0304 37 1 4.1525 -3.5564 -1.9015 38 1 6.1477 -4.4977 -0.9301 39 1 6.8600 -3.3010 -2.0631 40 1 7.4838 -3.1579 0.5646 41 1 7.1258 -1.6514 -0.3340 42 1 5.9967 -1.6578 4.7048 43 1 8.6375 -2.6458 4.8723 44 1 8.7117 -0.9001 4.5326 45 1 7.2969 -0.4527 6.5187 46 1 7.2222 -2.1982 6.8589 47 1 9.6886 -2.2564 7.1052 48 1 9.7639 -0.5109 6.7651 49 1 11.9115 -0.9323 9.7264 50 1 1.6582 -2.1323 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286790263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:23 Heat of formation + Delta-G solvation = -74.807842 kcal Electronic energy + Delta-G solvation = -29490.082442 eV Core-core repulsion = 25480.729140 eV Total energy + Delta-G solvation = -4009.353302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.09820 -40.70682 -39.51876 -38.54307 -37.11125 -35.26958 -33.82475 -33.11054 -32.89657 -32.49919 -29.13619 -28.92654 -27.73700 -26.61942 -24.96774 -23.61052 -23.03472 -22.58149 -22.39795 -21.59659 -20.29067 -18.82790 -18.46881 -18.12514 -17.92851 -17.17289 -16.94809 -16.64655 -16.39903 -16.03774 -15.85547 -15.79750 -15.22222 -14.86284 -14.80096 -14.40249 -14.31604 -14.24493 -14.16110 -13.97054 -13.79094 -13.54750 -13.39421 -13.19948 -12.99394 -12.80250 -12.79585 -12.56885 -12.56493 -12.39025 -12.01260 -11.97589 -11.87973 -11.73051 -11.62316 -11.56112 -11.22785 -10.62338 -10.56735 -10.34682 -9.99312 -9.70731 -9.48045 -8.20847 -6.31650 0.26608 0.37693 0.45132 1.18246 1.40674 1.41181 1.54288 2.06157 2.37496 2.43691 2.80690 3.13004 3.23750 3.53379 3.65779 3.70740 3.93521 4.00948 4.05461 4.12421 4.15262 4.18386 4.27047 4.46674 4.49688 4.50064 4.53949 4.71527 4.80052 4.82720 4.84074 4.88810 4.89299 4.91464 4.97355 5.06438 5.09079 5.12285 5.15346 5.24754 5.28257 5.30267 5.49940 5.51305 5.60721 5.66622 5.68678 5.82846 5.96860 6.08937 6.17803 6.22694 6.60005 6.85026 6.86795 7.37646 8.91221 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.002061 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.298855 B =13581.664558 C =14931.996605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.127 4.127 5 C -0.128 4.128 6 C -0.091 4.091 7 C 0.169 3.831 8 H 0.089 0.911 9 C -0.112 4.112 10 C -0.124 4.124 11 C 0.089 3.911 12 N -0.581 5.581 13 C 0.522 3.478 14 O -0.537 6.537 15 C 0.503 3.497 16 O -0.537 6.537 17 N -0.688 5.688 18 C 0.130 3.870 19 C -0.106 4.106 20 C 0.026 3.974 21 C -0.541 4.541 22 H 0.063 0.937 23 C -0.002 4.002 24 N -0.932 5.932 25 Si 0.966 3.034 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.279 1.279 29 C -0.117 4.117 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.417 0.583 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.066 0.934 47 H -0.003 1.003 48 H -0.003 1.003 49 H 0.264 0.736 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.973 -1.993 -27.656 34.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.091 4.091 7 C 0.067 3.933 8 H 0.107 0.893 9 C -0.149 4.149 10 C -0.162 4.162 11 C -0.033 4.033 12 N -0.314 5.314 13 C 0.304 3.696 14 O -0.415 6.415 15 C 0.283 3.717 16 O -0.415 6.415 17 N -0.340 5.340 18 C 0.007 3.993 19 C -0.144 4.144 20 C -0.012 4.012 21 C -0.579 4.579 22 H 0.081 0.919 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.790 3.210 26 H -0.185 1.185 27 H -0.204 1.204 28 H -0.205 1.205 29 C -0.136 4.136 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.254 0.746 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.016 0.984 48 H 0.015 0.985 49 H 0.072 0.928 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.598 -2.011 -27.614 33.921 hybrid contribution 0.260 0.455 1.542 1.629 sum -19.338 -1.556 -26.071 32.498 Atomic orbital electron populations 1.20824 0.89320 1.03419 1.03250 1.20240 0.97524 0.92856 0.98659 1.21306 0.94123 0.98509 1.00938 1.21340 0.95021 0.98184 0.99900 1.20944 0.99507 0.92703 1.01481 1.20075 0.94249 0.94665 1.00151 1.20835 0.85732 0.94478 0.92229 0.89325 1.22739 0.97414 1.02713 0.92082 1.22870 0.96210 0.99637 0.97443 1.22860 0.87086 1.01199 0.92141 1.48451 1.10257 1.66935 1.05803 1.19714 0.88879 0.78589 0.82387 1.90758 1.33427 1.49683 1.67592 1.20217 0.89560 0.78488 0.83398 1.90698 1.33623 1.49458 1.67700 1.45895 1.11567 1.68807 1.07750 1.21469 0.84172 1.01754 0.91927 1.21640 0.99348 1.01694 0.91703 1.18929 0.92549 0.95464 0.94272 1.21689 0.93224 1.48243 0.94769 0.91894 1.25985 0.94889 0.95152 1.03972 1.70103 0.99313 1.51121 1.36727 0.85386 0.78748 0.77768 0.79062 1.18543 1.20445 1.20482 1.21043 0.93014 0.98623 1.00886 0.89793 0.91088 0.90929 0.84453 0.85130 0.87379 0.89760 0.87090 0.89625 0.87126 0.89387 0.90844 0.74601 0.91596 0.91761 0.91662 0.91545 0.98423 0.98505 0.92763 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.09 -1.60 5.88 -19.87 -0.12 -1.72 16 3 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 4 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 5 C -0.13 -2.77 9.14 22.27 0.20 -2.57 16 6 C -0.09 -1.82 4.09 -19.87 -0.08 -1.90 16 7 C 0.17 2.96 3.05 44.60 0.14 3.10 16 8 H 0.09 1.54 8.04 -2.38 -0.02 1.52 16 9 C -0.11 -1.13 6.47 31.78 0.21 -0.92 16 10 C -0.12 -1.25 7.08 31.98 0.23 -1.02 16 11 C 0.09 1.60 6.07 86.83 0.53 2.13 16 12 N -0.58 -12.91 2.30 -793.45 -1.83 -14.74 16 13 C 0.52 14.91 7.52 87.27 0.66 15.56 16 14 O -0.54 -17.47 16.32 -3.25 -0.05 -17.52 16 15 C 0.50 15.64 7.86 87.27 0.69 16.32 16 16 O -0.54 -18.09 13.78 -3.23 -0.04 -18.14 16 17 N -0.69 -21.35 5.55 -464.41 -2.58 -23.93 16 18 C 0.13 4.55 5.67 86.38 0.49 5.04 16 19 C -0.11 -4.18 5.27 30.59 0.16 -4.02 16 20 C 0.03 1.32 4.97 29.85 0.15 1.47 16 21 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 22 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 23 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 24 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 25 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 26 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 29 C -0.12 -2.15 9.33 22.27 0.21 -1.94 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 32 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 33 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.11 2.41 7.66 -2.91 -0.02 2.39 16 36 H 0.08 0.85 7.82 -2.39 -0.02 0.84 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 1.93 6.16 -2.38 -0.01 1.92 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.42 11.96 7.95 -92.70 -0.74 11.22 16 43 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 48 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 50 H 0.13 1.95 8.05 -2.91 -0.02 1.93 16 Total: -1.00 -71.17 412.41 3.30 -67.87 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.19 Total: 21.92 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.30 Total: -5.33 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -4.12 Total: -95.05 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.10 Total: -35.66 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.17 3.30 -67.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286790263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.935 kcal (2) G-P(sol) polarization free energy of solvation -71.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds