Wall clock time and date at job start Wed Apr 1 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 C 1.50700 * 120.00273 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47492 * 89.99296 * 6 5 4 8 8 O 1.21285 * 119.99673 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00017 * 179.97438 * 7 6 5 10 10 C 1.46962 * 120.59579 * 359.72933 * 9 7 6 11 11 C 1.53808 * 108.40000 * 124.75341 * 10 9 7 12 12 N 1.46954 * 108.58092 * 49.63419 * 11 10 9 13 13 C 1.34778 * 120.59162 * 124.62537 * 12 11 10 14 14 O 1.21291 * 120.00228 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00142 * 0.02562 * 13 12 11 16 16 C 1.52999 * 109.46977 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.46977 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99749 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00150 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00109 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99817 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46941 * 90.00087 * 21 19 17 23 23 H 1.48503 * 109.46733 * 209.99486 * 21 19 17 24 24 H 1.48490 * 109.47405 * 329.99759 * 21 19 17 25 25 C 1.46958 * 118.81680 * 304.65052 * 12 11 10 26 26 C 1.46965 * 120.59199 * 180.02562 * 9 7 6 27 27 C 1.38238 * 119.99712 * 359.97124 * 5 4 3 28 28 C 1.38233 * 120.00012 * 359.96176 * 27 5 4 29 29 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 30 30 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 31 31 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 32 32 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 34 34 H 1.08999 * 109.46948 * 210.00264 * 6 5 4 35 35 H 1.09009 * 109.46815 * 329.99236 * 6 5 4 36 36 H 1.09001 * 109.60997 * 244.53596 * 10 9 7 37 37 H 1.09005 * 109.60827 * 5.04270 * 10 9 7 38 38 H 1.09001 * 109.73853 * 289.84752 * 11 10 9 39 39 H 1.09002 * 109.67529 * 169.38839 * 11 10 9 40 40 H 1.08996 * 109.47065 * 300.00015 * 15 13 12 41 41 H 1.08998 * 109.46845 * 59.99782 * 15 13 12 42 42 H 1.08996 * 109.47182 * 299.99878 * 16 15 13 43 43 H 1.08998 * 109.47565 * 60.00157 * 16 15 13 44 44 H 0.96995 * 120.00025 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.61042 * 295.47930 * 25 12 11 46 46 H 1.09004 * 109.75735 * 175.04919 * 25 12 11 47 47 H 1.08997 * 109.61193 * 354.94510 * 26 9 7 48 48 H 1.09000 * 109.61099 * 115.29580 * 26 9 7 49 49 H 1.08002 * 119.99672 * 179.97438 * 27 5 4 50 50 H 1.08004 * 119.99493 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 6 5.7787 -0.0001 0.0112 7 6 6.2757 -0.0033 1.4339 8 8 5.4841 -0.0059 2.3527 9 7 7.5998 -0.0045 1.6851 10 6 8.5705 -0.0085 0.5816 11 6 9.5174 1.1898 0.7636 12 7 10.0164 1.1866 2.1458 13 6 11.3406 1.1847 2.3970 14 8 11.7407 1.1817 3.5420 15 6 12.3242 1.1863 1.2552 16 6 13.7499 1.1830 1.8103 17 6 14.7335 1.1840 0.6686 18 1 14.3773 1.1863 -0.3510 19 6 16.0881 1.1819 0.9255 20 7 16.9465 1.1823 -0.0709 21 14 16.7041 1.1771 2.6891 22 1 16.8659 -0.2243 3.1530 23 1 18.0129 1.8755 2.7580 24 1 15.7236 1.8762 3.5579 25 6 9.0458 1.1851 3.2493 26 6 8.0989 -0.0082 3.0674 27 6 3.5805 -1.1972 0.0001 28 6 2.1981 -1.1972 -0.0042 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1325 0.0004 33 1 4.1205 2.1324 0.0100 34 1 6.1439 -0.8889 -0.5034 35 1 6.1439 0.8911 -0.4993 36 1 9.1424 -0.9363 0.6009 37 1 8.0443 0.0800 -0.3688 38 1 8.9784 2.1174 0.5714 39 1 10.3554 1.1037 0.0719 40 1 12.1711 0.2980 0.6426 41 1 12.1729 2.0779 0.6467 42 1 13.9033 2.0711 2.4233 43 1 13.9009 0.2912 2.4187 44 1 17.8994 1.1804 0.1099 45 1 8.4732 2.1124 3.2341 46 1 9.5698 1.0943 4.2008 47 1 7.2612 0.0808 3.7590 48 1 8.6354 -0.9372 3.2602 49 1 4.1205 -2.1325 -0.0005 50 1 1.6582 -2.1325 -0.0080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291611608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:51 Heat of formation + Delta-G solvation = -48.356673 kcal Electronic energy + Delta-G solvation = -29232.394929 eV Core-core repulsion = 25224.188636 eV Total energy + Delta-G solvation = -4008.206293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.80015 -39.81689 -39.05252 -37.02401 -34.25293 -34.03549 -33.62026 -32.10231 -31.20517 -31.08338 -30.03556 -28.06693 -26.35482 -25.49734 -23.97156 -23.02715 -22.86547 -21.46892 -20.85649 -19.74760 -18.49302 -17.65946 -16.93949 -16.68548 -16.27585 -16.13038 -15.83827 -15.62093 -15.52918 -15.29591 -15.22525 -14.24776 -14.12597 -14.07182 -13.90920 -13.73429 -13.60782 -13.48439 -13.13782 -12.76431 -12.66122 -12.60545 -12.38152 -12.20017 -12.17013 -11.86554 -11.79186 -11.57537 -11.38702 -11.35586 -11.24608 -11.01130 -10.19724 -10.10990 -10.08765 -9.82600 -9.41272 -9.30327 -9.20196 -9.17648 -8.78893 -8.54864 -8.43209 -6.06896 -4.05979 1.00472 1.15261 2.33264 2.54649 2.97717 3.12239 3.35116 3.42134 3.46963 3.52685 4.23790 4.28478 4.44582 4.47579 4.52004 4.57382 4.62785 4.71575 4.74815 4.85282 4.89211 5.04223 5.07349 5.11457 5.13745 5.18392 5.22714 5.27802 5.28765 5.41711 5.42552 5.46203 5.51641 5.62139 5.74529 5.78465 5.79442 5.94642 5.99434 6.09959 6.16230 6.28740 6.30978 6.46295 6.61287 6.72240 7.04664 7.30918 7.37823 7.49291 7.74540 7.87375 8.42368 8.52274 8.95339 9.56217 11.05760 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.001779 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.746919 B =15739.191248 C =16203.761154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.072 4.072 6 C -0.102 4.102 7 C 0.517 3.483 8 O -0.532 6.532 9 N -0.614 5.614 10 C 0.089 3.911 11 C 0.093 3.907 12 N -0.625 5.625 13 C 0.513 3.487 14 O -0.536 6.536 15 C -0.121 4.121 16 C 0.001 3.999 17 C -0.526 4.526 18 H 0.073 0.927 19 C 0.070 3.930 20 N -0.903 5.903 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 C 0.098 3.902 26 C 0.099 3.901 27 C -0.101 4.101 28 C -0.120 4.120 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.023 0.977 43 H 0.019 0.981 44 H 0.263 0.737 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.073 0.927 49 H 0.119 0.881 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.717 -2.813 -3.295 32.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.118 4.118 5 C -0.072 4.072 6 C -0.142 4.142 7 C 0.306 3.694 8 O -0.408 6.408 9 N -0.348 5.348 10 C -0.035 4.035 11 C -0.031 4.031 12 N -0.361 5.361 13 C 0.304 3.696 14 O -0.411 6.411 15 C -0.161 4.161 16 C -0.037 4.037 17 C -0.564 4.564 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.541 5.541 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.186 1.186 25 C -0.025 4.025 26 C -0.024 4.024 27 C -0.119 4.119 28 C -0.138 4.138 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.091 0.909 49 H 0.137 0.863 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -31.711 -2.809 -2.203 31.911 hybrid contribution 0.555 -0.028 0.734 0.920 sum -31.156 -2.837 -1.469 31.320 Atomic orbital electron populations 1.20792 0.91301 1.02789 1.02230 1.19923 0.96037 0.93268 0.99596 1.20976 0.94058 0.97530 1.01229 1.20955 0.94259 0.97334 0.99272 1.19246 0.93465 0.93653 1.00838 1.20716 0.93404 1.05314 0.94745 1.20577 0.81539 0.75918 0.91406 1.90724 1.54318 1.49179 1.46574 1.48104 1.05436 1.73815 1.07466 1.22346 0.91312 0.99792 0.90012 1.22184 0.98850 0.97913 0.84137 1.48208 1.05932 1.75672 1.06290 1.21629 0.81924 0.74054 0.91985 1.90656 1.78032 1.48897 1.23562 1.21699 0.95831 1.03130 0.95394 1.19382 0.89710 0.97696 0.96892 1.21087 0.90319 1.51535 0.93425 0.90922 1.24962 0.96867 0.94273 0.97044 1.69907 1.02163 1.50926 1.31126 0.86808 0.78250 0.78758 0.85817 1.20245 1.21410 1.18557 1.21880 0.90522 0.97625 0.92504 1.22024 0.98343 0.98889 0.83153 1.20953 0.94258 0.97320 0.99333 1.20973 0.94050 0.97524 1.01267 0.91219 0.91583 0.91574 0.86129 0.86227 0.87800 0.87744 0.90128 0.88418 0.90975 0.87460 0.89565 0.89532 0.95823 0.96280 0.92688 0.91519 0.87857 0.88049 0.90900 0.86261 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.09 -0.72 5.88 -104.63 -0.62 -1.33 16 3 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 4 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 5 C -0.07 -0.64 4.37 -104.62 -0.46 -1.09 16 6 C -0.10 -0.72 4.17 -29.04 -0.12 -0.84 16 7 C 0.52 5.31 7.69 -10.99 -0.08 5.23 16 8 O -0.53 -7.56 15.44 5.55 0.09 -7.48 16 9 N -0.61 -5.79 2.94 -172.19 -0.51 -6.29 16 10 C 0.09 0.64 6.53 -3.37 -0.02 0.62 16 11 C 0.09 0.84 6.52 -3.37 -0.02 0.81 16 12 N -0.62 -8.08 2.95 -172.20 -0.51 -8.59 16 13 C 0.51 8.95 7.70 -10.98 -0.08 8.87 16 14 O -0.54 -11.50 15.39 5.55 0.09 -11.42 16 15 C -0.12 -2.20 3.98 -27.88 -0.11 -2.31 16 16 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 17 C -0.53 -14.61 9.66 -34.44 -0.33 -14.94 16 18 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 21 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 25 C 0.10 1.16 6.59 -3.58 -0.02 1.14 16 26 C 0.10 1.05 6.59 -3.57 -0.02 1.03 16 27 C -0.10 -0.88 9.70 -39.58 -0.38 -1.27 16 28 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.10 0.52 7.84 -51.93 -0.41 0.11 16 35 H 0.10 0.52 7.68 -51.92 -0.40 0.12 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.41 5.91 -51.93 -0.31 0.10 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.11 0.91 5.91 -51.93 -0.31 0.60 16 40 H 0.09 1.41 7.72 -51.93 -0.40 1.01 16 41 H 0.09 1.44 7.91 -51.93 -0.41 1.03 16 42 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 43 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.10 1.37 7.00 -51.93 -0.36 1.01 16 47 H 0.10 1.13 6.99 -51.93 -0.36 0.76 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 50 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -36.73 403.28 -9.88 -46.60 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.95 Total: -3.28 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -3.26 Total: -6.54 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.24 Total: -41.56 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.89 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.73 -9.88 -46.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291611608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.754 kcal (2) G-P(sol) polarization free energy of solvation -36.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds