Wall clock time and date at job start Wed Apr 1 2020 04:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38234 * 120.00034 * 2 1 4 4 C 1.38236 * 119.99966 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99628 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99598 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.87382 * 339.56508 * 6 5 4 8 8 C 1.54322 * 110.01164 * 100.66262 * 6 5 4 9 9 C 1.55157 * 102.94433 * 141.67957 * 8 6 5 10 10 C 1.55128 * 101.48575 * 324.33400 * 9 8 6 11 11 N 1.47028 * 109.88185 * 218.54661 * 6 5 4 12 12 C 1.34777 * 125.64541 * 61.45481 * 11 6 5 13 13 O 1.21353 * 120.00416 * 359.97438 * 12 11 6 14 14 C 1.49452 * 119.99621 * 180.02562 * 12 11 6 15 15 O 1.21343 * 119.99953 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99622 * 179.97438 * 14 12 11 17 17 C 1.46499 * 119.99665 * 179.72283 * 16 14 12 18 18 C 1.53004 * 109.47198 * 180.27868 * 17 16 14 19 19 C 1.52997 * 109.47000 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.46940 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00043 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00213 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00116 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47129 * 60.00316 * 24 22 20 26 26 H 1.48498 * 109.47276 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47240 * 300.00255 * 24 22 20 28 28 C 1.38229 * 120.00389 * 0.27889 * 5 4 3 29 29 C 1.38237 * 120.00094 * 359.50890 * 28 5 4 30 30 H 1.08994 * 109.46801 * 90.00136 * 1 2 3 31 31 H 1.08999 * 109.46958 * 210.00467 * 1 2 3 32 32 H 1.09002 * 109.46557 * 329.99908 * 1 2 3 33 33 H 1.08004 * 119.99865 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.00132 * 179.97438 * 4 3 2 35 35 H 1.09001 * 110.71938 * 260.04731 * 8 6 5 36 36 H 1.09001 * 110.71973 * 23.31459 * 8 6 5 37 37 H 1.09004 * 110.99869 * 82.56940 * 9 8 6 38 38 H 1.09000 * 111.00415 * 206.38662 * 9 8 6 39 39 H 1.08998 * 110.50000 * 278.44980 * 10 9 8 40 40 H 1.09000 * 110.34449 * 156.05571 * 10 9 8 41 41 H 0.97001 * 120.00485 * 0.02562 * 16 14 12 42 42 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 43 43 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 44 44 H 1.08995 * 109.46638 * 300.00121 * 18 17 16 45 45 H 1.09006 * 109.47139 * 60.00254 * 18 17 16 46 46 H 1.08995 * 109.47672 * 299.99669 * 19 18 17 47 47 H 1.09007 * 109.47288 * 60.00489 * 19 18 17 48 48 H 0.97000 * 120.00572 * 179.97438 * 23 22 20 49 49 H 1.08001 * 119.99943 * 179.73074 * 28 5 4 50 50 H 1.07995 * 120.00061 * 180.27940 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0028 7 1 6.1496 0.9604 -0.3553 8 6 6.3057 -0.2678 1.4283 9 6 7.5396 -1.1746 1.1782 10 6 7.0617 -2.0194 -0.0320 11 7 6.2794 -1.0818 -0.8579 12 6 6.0554 -1.1998 -2.1817 13 8 5.3885 -0.3676 -2.7608 14 6 6.6274 -2.3561 -2.9362 15 8 7.2938 -3.1885 -2.3571 16 7 6.4029 -2.4743 -4.2599 17 6 6.9687 -3.6045 -5.0007 18 6 6.5724 -3.4979 -6.4747 19 6 7.1638 -4.6779 -7.2484 20 6 6.7730 -4.5732 -8.7001 21 1 6.1641 -3.7474 -9.0372 22 6 7.1928 -5.5317 -9.5979 23 7 7.9338 -6.5376 -9.1874 24 14 6.7089 -5.4016 -11.3974 25 1 7.2312 -4.1302 -11.9597 26 1 7.2818 -6.5476 -12.1482 27 1 5.2287 -5.4237 -11.5149 28 6 3.5805 -1.1972 -0.0037 29 6 2.1982 -1.1972 0.0002 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3632 0.8900 0.5139 33 1 1.6582 2.1325 -0.0004 34 1 4.1206 2.1324 0.0001 35 1 6.6029 0.6634 1.9108 36 1 5.5575 -0.7903 2.0243 37 1 8.4161 -0.5796 0.9217 38 1 7.7396 -1.8091 2.0416 39 1 6.4337 -2.8449 0.3030 40 1 7.9173 -2.3960 -0.5927 41 1 5.8704 -1.8087 -4.7230 42 1 8.0552 -3.5882 -4.9145 43 1 6.5855 -4.5378 -4.5881 44 1 5.4860 -3.5143 -6.5608 45 1 6.9557 -2.5646 -6.8874 46 1 8.2502 -4.6612 -7.1622 47 1 6.7809 -5.6115 -6.8359 48 1 8.2289 -7.2122 -9.8189 49 1 4.1206 -2.1325 -0.0072 50 1 1.6582 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343140214.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:31 Heat of formation + Delta-G solvation = -56.590819 kcal Electronic energy + Delta-G solvation = -29469.973595 eV Core-core repulsion = 25461.410243 eV Total energy + Delta-G solvation = -4008.563353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10320 -39.73705 -38.54538 -37.59057 -35.60184 -33.45768 -33.31126 -31.93672 -31.23844 -31.11139 -29.64905 -27.27166 -26.34056 -25.20539 -23.35401 -22.99164 -22.08594 -21.81394 -20.89712 -20.55884 -19.43864 -17.79315 -17.20635 -16.94847 -16.38687 -15.85120 -15.74443 -15.42012 -15.19533 -15.05646 -14.62745 -14.45997 -14.16396 -14.01847 -13.79147 -13.66425 -13.56769 -13.47255 -13.22657 -12.69090 -12.56336 -12.33926 -12.30729 -11.92689 -11.85866 -11.80684 -11.77590 -11.36514 -11.20072 -11.15526 -11.03960 -10.89202 -10.75723 -10.62927 -9.89930 -9.70382 -9.33413 -9.14110 -9.13654 -9.09339 -8.94111 -8.64560 -8.37778 -6.02667 -4.05719 1.06991 1.21808 1.46902 2.25116 3.24378 3.32511 3.36955 3.38979 3.42584 3.60050 4.14040 4.27231 4.38162 4.43834 4.51094 4.58646 4.66426 4.75672 4.79311 4.90727 5.04097 5.14693 5.25789 5.32315 5.33176 5.37714 5.45797 5.50056 5.53114 5.53894 5.59470 5.62599 5.69111 5.79811 5.85389 5.87180 5.94030 6.07856 6.19439 6.30282 6.37055 6.38623 6.54073 6.71709 6.79501 6.95103 7.02140 7.33485 7.61256 7.73183 7.73860 7.95529 8.07827 8.36891 9.00488 9.58543 11.08569 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.002094 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.851762 B =13366.467747 C =14850.942319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.092 4.092 6 C 0.177 3.823 7 H 0.087 0.913 8 C -0.123 4.123 9 C -0.136 4.136 10 C 0.095 3.905 11 N -0.589 5.589 12 C 0.521 3.479 13 O -0.512 6.512 14 C 0.503 3.497 15 O -0.523 6.523 16 N -0.691 5.691 17 C 0.115 3.885 18 C -0.123 4.123 19 C 0.025 3.975 20 C -0.523 4.523 21 H 0.055 0.945 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C -0.099 4.099 29 C -0.119 4.119 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.411 0.589 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.262 0.738 49 H 0.117 0.883 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 15.250 26.853 31.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.118 4.118 5 C -0.093 4.093 6 C 0.074 3.926 7 H 0.105 0.895 8 C -0.161 4.161 9 C -0.174 4.174 10 C -0.027 4.027 11 N -0.324 5.324 12 C 0.305 3.695 13 O -0.387 6.387 14 C 0.283 3.717 15 O -0.400 6.400 16 N -0.343 5.343 17 C -0.007 4.007 18 C -0.161 4.161 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.117 4.117 29 C -0.137 4.137 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.246 0.754 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.071 0.929 49 H 0.135 0.865 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.760 14.905 26.763 31.601 hybrid contribution -0.490 0.249 -1.338 1.446 sum -8.250 15.154 25.425 30.727 Atomic orbital electron populations 1.20796 0.91258 1.02613 1.02451 1.19931 0.96064 0.93230 0.99485 1.20964 0.94015 0.97482 1.01311 1.20897 0.94174 0.97193 0.99580 1.19927 0.94654 0.93678 1.01056 1.20558 0.90061 0.91442 0.90586 0.89483 1.22726 0.97916 1.01192 0.94220 1.22915 0.97734 0.98460 0.98267 1.22750 0.96808 0.91594 0.91527 1.48327 1.51482 1.26241 1.06367 1.20035 0.81327 0.86741 0.81444 1.90775 1.38044 1.42282 1.67552 1.19927 0.81966 0.86181 0.83615 1.90699 1.38932 1.42225 1.68134 1.46069 1.52320 1.28525 1.07389 1.21835 0.98682 0.87323 0.92868 1.21928 1.00994 1.02201 0.90951 1.19024 0.96288 0.91745 0.94199 1.21163 1.32566 1.09186 0.93227 0.92637 1.25023 0.95107 0.95339 0.98967 1.69950 1.35897 1.12495 1.34980 0.86632 0.78812 0.77534 0.84862 1.20218 1.21272 1.20225 1.20888 0.94076 0.97525 0.99193 1.21004 0.94050 0.97595 1.01076 0.91085 0.91595 0.91621 0.86107 0.86112 0.89558 0.90032 0.90285 0.89403 0.90950 0.87648 0.75356 0.91116 0.91127 0.92452 0.92449 0.96204 0.96213 0.92860 0.86532 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 4 C -0.10 -0.96 9.68 -39.58 -0.38 -1.35 16 5 C -0.09 -0.96 4.09 -104.62 -0.43 -1.38 16 6 C 0.18 1.64 3.05 -68.10 -0.21 1.44 16 7 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 8 C -0.12 -0.77 6.46 -24.90 -0.16 -0.93 16 9 C -0.14 -0.84 7.10 -24.46 -0.17 -1.01 16 10 C 0.10 0.89 6.08 -2.41 -0.01 0.88 16 11 N -0.59 -6.67 2.32 -164.68 -0.38 -7.05 16 12 C 0.52 7.42 7.53 -11.58 -0.09 7.34 16 13 O -0.51 -8.29 16.31 5.49 0.09 -8.20 16 14 C 0.50 7.76 7.86 -11.58 -0.09 7.67 16 15 O -0.52 -8.69 13.77 5.50 0.08 -8.62 16 16 N -0.69 -10.71 5.55 -60.73 -0.34 -11.04 16 17 C 0.11 1.99 5.67 -4.04 -0.02 1.97 16 18 C -0.12 -2.41 5.27 -26.73 -0.14 -2.56 16 19 C 0.03 0.63 4.97 -27.88 -0.14 0.49 16 20 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 24 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C -0.10 -1.07 9.14 -39.58 -0.36 -1.43 16 29 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.12 0.94 8.05 -52.49 -0.42 0.52 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.50 7.82 -51.93 -0.41 0.10 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 1.16 6.14 -51.93 -0.32 0.84 16 41 H 0.41 5.94 7.94 -40.82 -0.32 5.61 16 42 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.12 1.26 7.68 -52.49 -0.40 0.86 16 50 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 412.41 15.07 6.22 6.22 Total: -1.00 -32.71 412.41 -10.43 -43.15 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.17 Total: 2.25 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.64 Total: -7.26 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.02 Total: -44.09 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.17 Total: -16.82 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.71 -10.43 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343140214.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.442 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds