Wall clock time and date at job start Wed Apr 1 2020 04:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38234 * 120.00034 * 2 1 4 4 C 1.38236 * 119.99966 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99628 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99598 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.87382 * 339.56508 * 6 5 4 8 8 C 1.54322 * 110.01164 * 100.66262 * 6 5 4 9 9 C 1.55157 * 102.94433 * 141.67957 * 8 6 5 10 10 C 1.55128 * 101.48575 * 324.33400 * 9 8 6 11 11 N 1.47028 * 109.88185 * 218.54661 * 6 5 4 12 12 C 1.34777 * 125.64541 * 61.45481 * 11 6 5 13 13 O 1.21353 * 120.00416 * 359.97438 * 12 11 6 14 14 C 1.49452 * 119.99621 * 180.02562 * 12 11 6 15 15 O 1.21343 * 119.99953 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99622 * 179.97438 * 14 12 11 17 17 C 1.46499 * 119.99665 * 179.72283 * 16 14 12 18 18 C 1.53004 * 109.47198 * 180.27868 * 17 16 14 19 19 C 1.52997 * 109.47000 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.46940 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00043 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00213 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00116 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47129 * 60.00316 * 24 22 20 26 26 H 1.48498 * 109.47276 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47240 * 300.00255 * 24 22 20 28 28 C 1.38229 * 120.00389 * 0.27889 * 5 4 3 29 29 C 1.38237 * 120.00094 * 359.50890 * 28 5 4 30 30 H 1.08994 * 109.46801 * 90.00136 * 1 2 3 31 31 H 1.08999 * 109.46958 * 210.00467 * 1 2 3 32 32 H 1.09002 * 109.46557 * 329.99908 * 1 2 3 33 33 H 1.08004 * 119.99865 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.00132 * 179.97438 * 4 3 2 35 35 H 1.09001 * 110.71938 * 260.04731 * 8 6 5 36 36 H 1.09001 * 110.71973 * 23.31459 * 8 6 5 37 37 H 1.09004 * 110.99869 * 82.56940 * 9 8 6 38 38 H 1.09000 * 111.00415 * 206.38662 * 9 8 6 39 39 H 1.08998 * 110.50000 * 278.44980 * 10 9 8 40 40 H 1.09000 * 110.34449 * 156.05571 * 10 9 8 41 41 H 0.97001 * 120.00485 * 0.02562 * 16 14 12 42 42 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 43 43 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 44 44 H 1.08995 * 109.46638 * 300.00121 * 18 17 16 45 45 H 1.09006 * 109.47139 * 60.00254 * 18 17 16 46 46 H 1.08995 * 109.47672 * 299.99669 * 19 18 17 47 47 H 1.09007 * 109.47288 * 60.00489 * 19 18 17 48 48 H 0.97000 * 120.00572 * 179.97438 * 23 22 20 49 49 H 1.08001 * 119.99943 * 179.73074 * 28 5 4 50 50 H 1.07995 * 120.00061 * 180.27940 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0028 7 1 6.1496 0.9604 -0.3553 8 6 6.3057 -0.2678 1.4283 9 6 7.5396 -1.1746 1.1782 10 6 7.0617 -2.0194 -0.0320 11 7 6.2794 -1.0818 -0.8579 12 6 6.0554 -1.1998 -2.1817 13 8 5.3885 -0.3676 -2.7608 14 6 6.6274 -2.3561 -2.9362 15 8 7.2938 -3.1885 -2.3571 16 7 6.4029 -2.4743 -4.2599 17 6 6.9687 -3.6045 -5.0007 18 6 6.5724 -3.4979 -6.4747 19 6 7.1638 -4.6779 -7.2484 20 6 6.7730 -4.5732 -8.7001 21 1 6.1641 -3.7474 -9.0372 22 6 7.1928 -5.5317 -9.5979 23 7 7.9338 -6.5376 -9.1874 24 14 6.7089 -5.4016 -11.3974 25 1 7.2312 -4.1302 -11.9597 26 1 7.2818 -6.5476 -12.1482 27 1 5.2287 -5.4237 -11.5149 28 6 3.5805 -1.1972 -0.0037 29 6 2.1982 -1.1972 0.0002 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3632 0.8900 0.5139 33 1 1.6582 2.1325 -0.0004 34 1 4.1206 2.1324 0.0001 35 1 6.6029 0.6634 1.9108 36 1 5.5575 -0.7903 2.0243 37 1 8.4161 -0.5796 0.9217 38 1 7.7396 -1.8091 2.0416 39 1 6.4337 -2.8449 0.3030 40 1 7.9173 -2.3960 -0.5927 41 1 5.8704 -1.8087 -4.7230 42 1 8.0552 -3.5882 -4.9145 43 1 6.5855 -4.5378 -4.5881 44 1 5.4860 -3.5143 -6.5608 45 1 6.9557 -2.5646 -6.8874 46 1 8.2502 -4.6612 -7.1622 47 1 6.7809 -5.6115 -6.8359 48 1 8.2289 -7.2122 -9.8189 49 1 4.1206 -2.1325 -0.0072 50 1 1.6582 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343140214.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:30 Heat of formation + Delta-G solvation = -74.685010 kcal Electronic energy + Delta-G solvation = -29470.758218 eV Core-core repulsion = 25461.410243 eV Total energy + Delta-G solvation = -4009.347976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.09499 -40.69800 -39.52226 -38.54746 -37.11299 -35.26978 -34.09220 -33.09663 -32.70854 -31.83576 -30.31598 -29.00328 -27.01519 -26.53134 -24.82944 -23.74262 -23.15884 -22.46373 -22.38737 -21.62851 -20.52395 -18.89298 -18.46546 -18.15603 -17.89295 -16.97304 -16.94624 -16.48891 -16.25430 -16.06095 -15.94340 -15.82965 -15.25286 -14.86063 -14.77633 -14.43348 -14.33482 -14.29110 -14.18743 -14.08847 -13.80129 -13.54748 -13.39245 -13.19117 -12.96114 -12.79594 -12.74219 -12.56161 -12.51628 -12.45113 -11.99629 -11.96949 -11.84943 -11.72223 -11.63633 -11.55310 -11.25817 -10.61602 -10.55363 -10.34698 -9.97340 -9.84608 -9.38315 -8.20346 -6.31435 0.26233 0.36213 0.47571 1.18579 1.41143 1.43777 1.51697 2.06250 2.37888 2.44075 2.80908 3.13315 3.24172 3.54549 3.67021 3.73058 3.91012 4.04596 4.05380 4.08761 4.14333 4.15301 4.25400 4.44971 4.49633 4.53669 4.55294 4.76794 4.80146 4.80825 4.84720 4.88764 4.89588 4.90884 4.93510 5.07227 5.10661 5.12736 5.15927 5.23670 5.27020 5.30623 5.47349 5.49641 5.61085 5.68147 5.68720 5.82792 5.97193 6.09208 6.18149 6.22765 6.60230 6.84839 6.86890 7.37795 8.91342 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.002094 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.851762 B =13366.467747 C =14850.942319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.126 4.126 4 C -0.109 4.109 5 C -0.102 4.102 6 C 0.170 3.830 7 H 0.089 0.911 8 C -0.112 4.112 9 C -0.124 4.124 10 C 0.088 3.912 11 N -0.581 5.581 12 C 0.522 3.478 13 O -0.537 6.537 14 C 0.502 3.498 15 O -0.537 6.537 16 N -0.688 5.688 17 C 0.130 3.870 18 C -0.106 4.106 19 C 0.026 3.974 20 C -0.544 4.544 21 H 0.063 0.937 22 C -0.001 4.001 23 N -0.932 5.932 24 Si 0.965 3.035 25 H -0.267 1.267 26 H -0.284 1.284 27 H -0.267 1.267 28 C -0.115 4.115 29 C -0.134 4.134 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.417 0.583 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.066 0.934 46 H -0.003 1.003 47 H -0.004 1.004 48 H 0.264 0.736 49 H 0.108 0.892 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 17.092 27.802 33.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.128 4.128 5 C -0.103 4.103 6 C 0.068 3.932 7 H 0.107 0.893 8 C -0.150 4.150 9 C -0.161 4.161 10 C -0.034 4.034 11 N -0.314 5.314 12 C 0.304 3.696 13 O -0.414 6.414 14 C 0.283 3.717 15 O -0.415 6.415 16 N -0.340 5.340 17 C 0.007 3.993 18 C -0.144 4.144 19 C -0.011 4.011 20 C -0.582 4.582 21 H 0.081 0.919 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.192 1.192 26 H -0.210 1.210 27 H -0.192 1.192 28 C -0.134 4.134 29 C -0.152 4.152 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.254 0.746 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.073 0.927 49 H 0.127 0.873 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.623 16.765 27.757 33.554 hybrid contribution -0.218 -0.340 -1.554 1.606 sum -8.841 16.425 26.203 32.164 Atomic orbital electron populations 1.20830 0.89586 1.03745 1.02770 1.20266 0.97455 0.93044 0.98910 1.21294 0.94152 0.98330 1.00620 1.21183 0.94663 0.97643 0.99292 1.20065 0.95151 0.93813 1.01298 1.20834 0.89759 0.90705 0.91903 0.89321 1.22737 0.97656 1.02379 0.92193 1.22906 0.97770 0.98183 0.97283 1.22887 0.95992 0.92104 0.92368 1.48439 1.50510 1.26853 1.05646 1.19708 0.81401 0.86052 0.82423 1.90757 1.39432 1.42939 1.68315 1.20228 0.81556 0.86469 0.83431 1.90696 1.39502 1.42878 1.68419 1.45894 1.52423 1.28112 1.07591 1.21469 0.98356 0.87833 0.91673 1.21640 1.01027 1.00044 0.91656 1.18919 0.95015 0.93023 0.94191 1.21638 1.32527 1.09409 0.94601 0.91879 1.25980 0.95000 0.94931 1.03988 1.70086 1.37109 1.13374 1.36686 0.85499 0.78840 0.77825 0.78872 1.19150 1.20960 1.19195 1.20943 0.94567 0.97544 1.00325 1.21219 0.94080 0.98489 1.01451 0.91049 0.90890 0.90140 0.84055 0.84431 0.87102 0.89787 0.89613 0.87178 0.90857 0.89404 0.74600 0.91619 0.91758 0.91656 0.91548 0.98454 0.98532 0.92744 0.87345 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.24 0.71 -0.69 16 2 C -0.10 -1.73 5.88 -19.86 -0.12 -1.85 16 3 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 4 C -0.11 -1.97 9.68 22.27 0.22 -1.75 16 5 C -0.10 -2.04 4.09 -19.87 -0.08 -2.12 16 6 C 0.17 2.95 3.05 44.60 0.14 3.09 16 7 H 0.09 1.53 8.03 -2.39 -0.02 1.51 16 8 C -0.11 -1.13 6.46 31.78 0.21 -0.92 16 9 C -0.12 -1.25 7.10 32.06 0.23 -1.02 16 10 C 0.09 1.59 6.08 86.93 0.53 2.12 16 11 N -0.58 -12.89 2.32 -793.28 -1.84 -14.73 16 12 C 0.52 14.89 7.53 87.27 0.66 15.55 16 13 O -0.54 -17.42 16.31 -3.26 -0.05 -17.47 16 14 C 0.50 15.64 7.86 87.27 0.69 16.33 16 15 O -0.54 -18.12 13.77 -3.23 -0.04 -18.17 16 16 N -0.69 -21.36 5.55 -464.40 -2.58 -23.94 16 17 C 0.13 4.55 5.67 86.38 0.49 5.04 16 18 C -0.11 -4.17 5.27 30.59 0.16 -4.01 16 19 C 0.03 1.36 4.97 29.85 0.15 1.51 16 20 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 21 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 22 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 23 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 24 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 C -0.12 -2.50 9.14 22.27 0.20 -2.30 16 29 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 32 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 33 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.14 1.89 8.05 -2.91 -0.02 1.86 16 35 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.85 7.82 -2.39 -0.02 0.83 16 37 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.94 6.14 -2.39 -0.01 1.92 16 41 H 0.42 11.96 7.94 -92.71 -0.74 11.22 16 42 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 46 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 48 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 49 H 0.11 2.41 7.68 -2.91 -0.02 2.39 16 50 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -71.08 412.41 3.30 -67.79 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.19 Total: 22.20 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 5.30 Total: -5.41 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -4.13 Total: -95.11 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.10 Total: -35.64 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -71.08 3.30 -67.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343140214.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.900 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds