Wall clock time and date at job start Wed Apr 1 2020 04:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99915 * 2 1 4 4 N 1.46496 * 109.46968 * 125.00305 * 3 2 1 5 5 C 1.46502 * 120.00130 * 269.99861 * 4 3 2 6 6 C 1.50701 * 109.47245 * 270.00392 * 5 4 3 7 7 H 1.08000 * 120.00023 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00037 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00276 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00042 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46849 * 89.99798 * 10 8 6 12 12 H 1.48497 * 109.47522 * 209.99891 * 10 8 6 13 13 H 1.48503 * 109.47355 * 330.00358 * 10 8 6 14 14 C 1.34775 * 120.00057 * 90.00263 * 4 3 2 15 15 O 1.21284 * 119.99882 * 179.97438 * 14 4 3 16 16 C 1.50694 * 120.00111 * 359.97438 * 14 4 3 17 17 C 1.52997 * 109.47360 * 180.02562 * 16 14 4 18 18 H 1.08997 * 109.47634 * 54.99501 * 17 16 14 19 19 N 1.46502 * 109.46951 * 294.99775 * 17 16 14 20 20 C 1.34777 * 119.99887 * 154.07410 * 19 17 16 21 21 C 1.50709 * 119.99765 * 174.99182 * 20 19 17 22 22 O 1.21277 * 120.00294 * 354.71678 * 20 19 17 23 23 C 1.50702 * 109.47445 * 175.00087 * 17 16 14 24 24 C 1.38233 * 119.99703 * 79.23055 * 23 17 16 25 25 C 1.38241 * 119.99537 * 179.77177 * 24 23 17 26 26 C 1.38235 * 119.99903 * 0.49954 * 25 24 23 27 27 C 1.50699 * 119.99856 * 179.73106 * 26 25 24 28 28 C 1.38235 * 119.99836 * 359.75014 * 26 25 24 29 29 C 1.38227 * 120.00426 * 0.02562 * 28 26 25 30 30 H 1.08004 * 120.00435 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.00139 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.00333 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47030 * 5.00114 * 3 2 1 34 34 H 1.08996 * 109.47298 * 245.00331 * 3 2 1 35 35 H 1.09009 * 109.46734 * 30.00342 * 5 4 3 36 36 H 1.08996 * 109.47259 * 149.99852 * 5 4 3 37 37 H 0.97001 * 119.99945 * 179.97438 * 9 8 6 38 38 H 1.08995 * 109.47358 * 60.00128 * 16 14 4 39 39 H 1.09000 * 109.47068 * 300.00431 * 16 14 4 40 40 H 0.96996 * 120.00017 * 334.08187 * 19 17 16 41 41 H 1.08997 * 109.46617 * 179.72408 * 21 20 19 42 42 H 1.08994 * 109.47270 * 299.72758 * 21 20 19 43 43 H 1.09002 * 109.46810 * 59.73061 * 21 20 19 44 44 H 1.07999 * 120.00407 * 359.97438 * 24 23 17 45 45 H 1.08000 * 120.00123 * 180.23237 * 25 24 23 46 46 H 1.09005 * 109.46946 * 270.02335 * 27 26 25 47 47 H 1.08999 * 109.47183 * 30.02042 * 27 26 25 48 48 H 1.09001 * 109.47041 * 150.02423 * 27 26 25 49 49 H 1.08005 * 119.99506 * 179.97438 * 28 26 25 50 50 H 1.07999 * 120.00438 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3436 2.4804 7 1 3.3039 3.8369 1.6368 8 6 2.5185 4.0666 3.6083 9 7 2.7679 5.3570 3.6570 10 14 1.7227 3.2135 5.0672 11 1 2.7780 2.7224 5.9894 12 1 0.8462 4.1738 5.7846 13 1 0.9114 2.0659 4.5875 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8888 1.9188 16 6 4.6969 0.3175 -0.3481 17 6 6.1530 -0.1411 -0.2472 18 1 6.2541 -0.8524 0.5725 19 7 7.0137 1.0178 0.0031 20 6 8.1953 0.8565 0.6310 21 6 9.1309 2.0275 0.7883 22 8 8.5034 -0.2296 1.0738 23 6 6.5625 -0.8012 -1.5386 24 6 6.9023 -0.0278 -2.6327 25 6 7.2825 -0.6333 -3.8159 26 6 7.3128 -2.0123 -3.9079 27 6 7.7213 -2.6724 -5.1995 28 6 6.9679 -2.7856 -2.8153 29 6 6.5923 -2.1802 -1.6308 30 1 -0.5401 0.9353 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4027 -0.9314 35 1 1.4887 1.6965 2.5459 36 1 3.0990 1.3602 3.2259 37 1 2.5383 5.8657 4.4504 38 1 4.6119 1.0938 -1.1084 39 1 4.0677 -0.5295 -0.6218 40 1 6.7331 1.9011 -0.2830 41 1 10.0263 1.7079 1.3214 42 1 9.4091 2.4050 -0.1956 43 1 8.6339 2.8163 1.3530 44 1 6.8740 1.0496 -2.5623 45 1 7.5516 -0.0291 -4.6696 46 1 6.8399 -2.8321 -5.8207 47 1 8.4269 -2.0313 -5.7280 48 1 8.1927 -3.6314 -4.9842 49 1 6.9912 -3.8630 -2.8873 50 1 6.3225 -2.7844 -0.7772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359420557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:59 Heat of formation + Delta-G solvation = -31.426298 kcal Electronic energy + Delta-G solvation = -30501.811380 eV Core-core repulsion = 26494.339243 eV Total energy + Delta-G solvation = -4007.472137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.34159 -39.09049 -38.76551 -36.00480 -35.32054 -33.22895 -32.70760 -32.16782 -31.10477 -30.98988 -29.30362 -28.15340 -26.96014 -25.55052 -23.66996 -22.86322 -21.93704 -20.88656 -20.12133 -20.05763 -18.49056 -17.10725 -16.93603 -16.66941 -16.36229 -15.86773 -15.55788 -15.22991 -14.90620 -14.82876 -14.63619 -14.38878 -13.99240 -13.87657 -13.52108 -13.40906 -13.22729 -13.10255 -12.85864 -12.57552 -12.40819 -12.38206 -12.15407 -12.00258 -11.96117 -11.78489 -11.61183 -11.41672 -11.24095 -11.13978 -10.99834 -10.95267 -10.54739 -10.17218 -9.64776 -9.60280 -9.31226 -9.16624 -9.00341 -8.86007 -8.61904 -8.56452 -7.78655 -6.12560 -4.11124 1.20195 1.32772 2.32324 2.93631 3.26541 3.27486 3.33471 3.36182 3.40219 3.63851 3.86182 4.37156 4.61362 4.69674 4.78040 4.86565 4.94361 4.99834 5.06046 5.11400 5.19734 5.24092 5.26300 5.29941 5.35275 5.38983 5.41762 5.53223 5.55778 5.58188 5.62162 5.64700 5.85040 5.90717 5.95045 5.96223 6.06703 6.08876 6.32567 6.47356 6.48501 6.66944 6.67699 6.72837 6.80607 6.91216 6.92790 7.30863 7.57931 7.72348 8.18916 8.42697 8.49507 8.87724 8.93603 9.48414 11.00631 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.003269 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.562818 B = 8563.091130 C =10133.353815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.170 4.170 3 C 0.136 3.864 4 N -0.589 5.589 5 C 0.217 3.783 6 C -0.527 4.527 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.505 3.495 15 O -0.526 6.526 16 C -0.146 4.146 17 C 0.203 3.797 18 H 0.104 0.896 19 N -0.711 5.711 20 C 0.522 3.478 21 C -0.174 4.174 22 O -0.549 6.549 23 C -0.094 4.094 24 C -0.100 4.100 25 C -0.122 4.122 26 C -0.091 4.091 27 C -0.113 4.113 28 C -0.121 4.121 29 C -0.099 4.099 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.400 0.600 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.120 0.880 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 -12.300 -17.969 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.189 4.189 3 C 0.012 3.988 4 N -0.320 5.320 5 C 0.097 3.903 6 C -0.565 4.565 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.291 3.709 15 O -0.402 6.402 16 C -0.186 4.186 17 C 0.097 3.903 18 H 0.122 0.878 19 N -0.362 5.362 20 C 0.309 3.691 21 C -0.234 4.234 22 O -0.426 6.426 23 C -0.096 4.096 24 C -0.119 4.119 25 C -0.140 4.140 26 C -0.092 4.092 27 C -0.170 4.170 28 C -0.139 4.139 29 C -0.118 4.118 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.234 0.766 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.138 0.862 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.685 -12.876 -16.998 22.069 hybrid contribution -0.767 0.224 0.660 1.037 sum 4.918 -12.652 -16.337 21.241 Atomic orbital electron populations 1.23847 0.95875 1.01847 1.00462 1.23447 0.96425 0.99071 0.99999 1.20606 0.93164 0.95349 0.89673 1.47904 1.10703 1.60498 1.12923 1.19643 0.94862 0.95126 0.80677 1.21292 1.41148 0.91090 1.03006 0.90798 1.24835 0.95258 0.94710 0.98110 1.69888 1.47815 1.06592 1.29309 0.86879 0.79916 0.79681 0.83411 1.19912 1.21077 1.19058 1.20228 0.82230 0.78821 0.89628 1.90731 1.52158 1.55647 1.41699 1.22060 0.96008 1.02911 0.97658 1.19449 0.87661 0.88886 0.94323 0.87810 1.45791 1.19660 1.10305 1.60463 1.20619 0.81905 0.90290 0.76288 1.21906 0.99791 0.97735 1.03973 1.90673 1.75710 1.28279 1.47948 1.20244 1.00070 0.93853 0.95393 1.20920 0.98836 0.99722 0.92387 1.20981 1.01189 0.94075 0.97796 1.19907 0.99605 0.93822 0.95820 1.20777 1.01301 1.00474 0.94424 1.20980 1.00531 0.99532 0.92820 1.21017 0.98951 0.94035 0.97771 0.88218 0.88732 0.87709 0.89266 0.90476 0.95323 0.94637 0.92565 0.88701 0.87999 0.76599 0.89317 0.89799 0.89038 0.86205 0.86268 0.91285 0.91701 0.91694 0.86194 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 14.32 29.02 0.42 -1.72 16 2 C -0.17 -2.17 9.74 -36.02 -0.35 -2.52 16 3 C 0.14 2.00 5.65 -5.19 -0.03 1.97 16 4 N -0.59 -11.37 2.44 -176.44 -0.43 -11.80 16 5 C 0.22 5.18 4.23 -5.19 -0.02 5.16 16 6 C -0.53 -14.64 9.94 -34.44 -0.34 -14.99 16 7 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 10 Si 0.87 21.49 27.47 -169.99 -4.67 16.83 16 11 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 14 C 0.50 9.47 7.53 -10.99 -0.08 9.39 16 15 O -0.53 -12.27 14.93 5.55 0.08 -12.19 16 16 C -0.15 -1.92 3.77 -27.89 -0.11 -2.03 16 17 C 0.20 2.85 1.78 -69.08 -0.12 2.72 16 18 H 0.10 1.78 7.15 -51.93 -0.37 1.41 16 19 N -0.71 -10.08 3.47 -54.93 -0.19 -10.27 16 20 C 0.52 8.27 7.90 -10.98 -0.09 8.18 16 21 C -0.17 -2.05 10.32 36.01 0.37 -1.68 16 22 O -0.55 -10.91 16.70 5.56 0.09 -10.81 16 23 C -0.09 -1.15 4.92 -104.62 -0.51 -1.67 16 24 C -0.10 -1.08 9.32 -39.58 -0.37 -1.45 16 25 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 26 C -0.09 -0.89 5.88 -104.62 -0.62 -1.50 16 27 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 28 C -0.12 -1.24 9.70 -39.59 -0.38 -1.63 16 29 C -0.10 -1.17 9.67 -39.59 -0.38 -1.55 16 30 H 0.10 1.15 7.84 -52.48 -0.41 0.74 16 31 H 0.09 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.10 1.24 7.83 -52.49 -0.41 0.83 16 33 H 0.09 1.40 7.72 -51.93 -0.40 0.99 16 34 H 0.08 0.92 6.44 -51.93 -0.33 0.59 16 35 H 0.03 0.67 7.13 -51.92 -0.37 0.30 16 36 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 1.06 7.40 -51.93 -0.38 0.67 16 39 H 0.10 1.14 7.77 -51.93 -0.40 0.74 16 40 H 0.40 4.94 8.62 -40.82 -0.35 4.59 16 41 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.12 1.13 7.74 -52.49 -0.41 0.72 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 48 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 49 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 50 H 0.12 1.36 8.03 -52.49 -0.42 0.94 16 LS Contribution 419.38 15.07 6.32 6.32 Total: -1.00 -36.35 419.38 -8.77 -45.13 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.01 Total: 6.50 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.74 Total: -3.32 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.15 Total: -48.44 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.18 Total: -23.00 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -36.35 -8.77 -45.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359420557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.699 kcal (2) G-P(sol) polarization free energy of solvation -36.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds