Wall clock time and date at job start Wed Apr 1 2020 04:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50693 * 120.00256 * 2 1 4 4 N 1.46497 * 109.47122 * 124.99447 * 3 2 1 5 5 C 1.46496 * 120.00409 * 270.00452 * 4 3 2 6 6 C 1.50704 * 109.47227 * 269.99727 * 5 4 3 7 7 H 1.08008 * 119.99702 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00058 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00187 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 120.00243 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46795 * 90.00030 * 10 8 6 12 12 H 1.48496 * 109.47167 * 209.99919 * 10 8 6 13 13 H 1.48495 * 109.46842 * 329.99876 * 10 8 6 14 14 C 1.34785 * 119.99620 * 90.00265 * 4 3 2 15 15 O 1.21276 * 119.99868 * 180.02562 * 14 4 3 16 16 C 1.50697 * 119.99827 * 0.02562 * 14 4 3 17 17 C 1.53005 * 109.47046 * 179.97438 * 16 14 4 18 18 H 1.08998 * 109.46722 * 304.99934 * 17 16 14 19 19 N 1.46500 * 109.47151 * 64.99520 * 17 16 14 20 20 C 1.34775 * 120.00197 * 203.99872 * 19 17 16 21 21 C 1.50694 * 119.99935 * 184.99738 * 20 19 17 22 22 O 1.21280 * 119.99497 * 5.00581 * 20 19 17 23 23 C 1.50701 * 109.47195 * 184.99761 * 17 16 14 24 24 C 1.38237 * 119.99536 * 102.17182 * 23 17 16 25 25 C 1.38237 * 119.99396 * 179.97438 * 24 23 17 26 26 C 1.38236 * 120.00187 * 0.02562 * 25 24 23 27 27 C 1.50697 * 119.99845 * 179.97438 * 26 25 24 28 28 C 1.38227 * 119.99929 * 359.97438 * 26 25 24 29 29 C 1.38231 * 120.00419 * 359.97438 * 28 26 25 30 30 H 1.07993 * 119.99737 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99854 * 179.97438 * 1 2 3 32 32 H 1.07996 * 119.99764 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47252 * 4.99986 * 3 2 1 34 34 H 1.08995 * 109.47460 * 245.00367 * 3 2 1 35 35 H 1.08992 * 109.47573 * 29.99882 * 5 4 3 36 36 H 1.09002 * 109.47005 * 150.00062 * 5 4 3 37 37 H 0.96999 * 120.00300 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.47617 * 59.99882 * 16 14 4 39 39 H 1.09005 * 109.47209 * 299.99727 * 16 14 4 40 40 H 0.97001 * 119.99823 * 24.00601 * 19 17 16 41 41 H 1.09005 * 109.47447 * 0.02562 * 21 20 19 42 42 H 1.09003 * 109.46954 * 120.00788 * 21 20 19 43 43 H 1.08997 * 109.47501 * 240.00544 * 21 20 19 44 44 H 1.07995 * 120.00309 * 0.25577 * 24 23 17 45 45 H 1.08005 * 119.99678 * 179.97438 * 25 24 23 46 46 H 1.09006 * 109.47112 * 90.00173 * 27 26 25 47 47 H 1.09000 * 109.47028 * 209.99786 * 27 26 25 48 48 H 1.09005 * 109.47435 * 330.00156 * 27 26 25 49 49 H 1.08002 * 120.00057 * 179.97438 * 28 26 25 50 50 H 1.08000 * 120.00530 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3041 3.8368 1.6369 8 6 2.5184 4.0665 3.6083 9 7 2.7671 5.3571 3.6567 10 14 1.7237 3.2132 5.0677 11 1 2.7797 2.7230 5.9896 12 1 0.8469 4.1732 5.7851 13 1 0.9130 2.0651 4.5884 14 6 4.2497 0.8660 0.9825 15 8 5.0196 0.8878 1.9192 16 6 4.6972 0.3182 -0.3482 17 6 6.1538 -0.1395 -0.2475 18 1 6.7695 0.6847 0.1125 19 7 6.2487 -1.2641 0.6865 20 6 7.4152 -1.5270 1.3084 21 6 7.5451 -2.7485 2.1812 22 8 8.3601 -0.7803 1.1657 23 6 6.6393 -0.5728 -1.6067 24 6 7.4464 0.2661 -2.3521 25 6 7.8922 -0.1317 -3.5987 26 6 7.5304 -1.3681 -4.1001 27 6 8.0159 -1.8014 -5.4593 28 6 6.7233 -2.2069 -3.3547 29 6 6.2783 -1.8097 -2.1077 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3587 2.1316 0.0896 34 1 2.6213 1.4026 -0.9313 35 1 1.4888 1.6966 2.5460 36 1 3.0989 1.3601 3.2260 37 1 2.5382 5.8657 4.4502 38 1 4.6127 1.0952 -1.1080 39 1 4.0681 -0.5285 -0.6227 40 1 5.4721 -1.8197 0.8572 41 1 6.6007 -3.2929 2.1874 42 1 8.3328 -3.3925 1.7900 43 1 7.7959 -2.4441 3.1973 44 1 7.7325 1.2303 -1.9587 45 1 8.5225 0.5239 -4.1813 46 1 8.9665 -2.3247 -5.3558 47 1 7.2817 -2.4679 -5.9119 48 1 8.1508 -0.9251 -6.0934 49 1 6.4402 -3.1727 -3.7465 50 1 5.6474 -2.4648 -1.5254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359420560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:02 Heat of formation + Delta-G solvation = -30.284423 kcal Electronic energy + Delta-G solvation = -30475.845100 eV Core-core repulsion = 26468.422478 eV Total energy + Delta-G solvation = -4007.422622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.36640 -39.08857 -38.81319 -36.02049 -35.34341 -33.22658 -32.75472 -32.16330 -31.12969 -30.99157 -29.37261 -28.17202 -26.95611 -25.55575 -23.67221 -22.85806 -21.93332 -20.91485 -20.24650 -20.02520 -18.50378 -17.08909 -16.93833 -16.73259 -16.36470 -15.88679 -15.59509 -15.23456 -14.97141 -14.85000 -14.56373 -14.42285 -14.05035 -13.93489 -13.50360 -13.47927 -13.18234 -13.12611 -12.82518 -12.67262 -12.45098 -12.33272 -12.23911 -12.08610 -11.87194 -11.77201 -11.69839 -11.41075 -11.25062 -11.15410 -10.97748 -10.95707 -10.54599 -10.16854 -9.72213 -9.58114 -9.33476 -9.17237 -8.99502 -8.91170 -8.59950 -8.55965 -7.78528 -6.09663 -4.08573 1.20936 1.33977 2.29852 2.86068 3.24535 3.27740 3.33556 3.34558 3.35450 3.64834 3.85686 4.38286 4.61556 4.69708 4.78800 4.85694 4.92712 4.95727 5.03190 5.09190 5.16435 5.21649 5.23810 5.25390 5.33808 5.36267 5.40956 5.45427 5.48205 5.58653 5.62043 5.69080 5.79410 5.87429 5.89148 5.97265 6.06674 6.09233 6.33302 6.46393 6.48659 6.64300 6.66597 6.68743 6.78646 6.91593 6.92470 7.30995 7.59668 7.64109 8.18864 8.42207 8.45257 8.89734 8.95549 9.50508 11.03737 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.003117 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.928451 B = 8980.271512 C = 9788.732484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.169 4.169 3 C 0.135 3.865 4 N -0.589 5.589 5 C 0.219 3.781 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.505 3.495 15 O -0.526 6.526 16 C -0.145 4.145 17 C 0.201 3.799 18 H 0.106 0.894 19 N -0.711 5.711 20 C 0.518 3.482 21 C -0.169 4.169 22 O -0.545 6.545 23 C -0.094 4.094 24 C -0.097 4.097 25 C -0.120 4.120 26 C -0.091 4.091 27 C -0.113 4.113 28 C -0.124 4.124 29 C -0.101 4.101 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.396 0.604 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.118 0.882 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -19.082 -15.815 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.011 3.989 4 N -0.320 5.320 5 C 0.098 3.902 6 C -0.567 4.567 7 H 0.092 0.908 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.291 3.709 15 O -0.402 6.402 16 C -0.186 4.186 17 C 0.096 3.904 18 H 0.124 0.876 19 N -0.361 5.361 20 C 0.305 3.695 21 C -0.229 4.229 22 O -0.421 6.421 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.138 4.138 26 C -0.091 4.091 27 C -0.170 4.170 28 C -0.142 4.142 29 C -0.119 4.119 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.230 0.770 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.136 0.864 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.942 -18.350 -15.264 24.192 hybrid contribution -1.003 -0.518 0.900 1.444 sum 2.939 -18.868 -14.363 23.894 Atomic orbital electron populations 1.23852 0.95887 1.01865 1.00410 1.23421 0.96383 0.98970 1.00065 1.20613 0.93203 0.95346 0.89735 1.47905 1.10737 1.60451 1.12922 1.19628 0.94785 0.95153 0.80626 1.21320 1.41120 0.91145 1.03120 0.90763 1.24851 0.95292 0.94715 0.98111 1.69896 1.47757 1.06607 1.29265 0.86865 0.79841 0.79655 0.83413 1.19940 1.21077 1.19090 1.20233 0.82206 0.78852 0.89624 1.90728 1.52088 1.55692 1.41739 1.22055 0.95787 1.02725 0.98007 1.19486 0.95667 0.90181 0.85074 0.87637 1.45871 1.12971 1.32232 1.45059 1.20610 0.82432 0.86883 0.79535 1.21819 1.03727 0.96262 1.01057 1.90703 1.38911 1.49571 1.62958 1.20216 0.98327 0.95031 0.95985 1.21070 0.96451 0.99773 0.94222 1.21005 1.00556 0.96152 0.96071 1.19905 0.97948 0.94620 0.96637 1.20778 1.01211 1.01677 0.93314 1.20952 0.98958 0.99412 0.94869 1.20870 0.99806 0.95846 0.95420 0.88194 0.88744 0.87823 0.89240 0.90418 0.95333 0.94676 0.92556 0.87685 0.88958 0.76991 0.90874 0.89166 0.88815 0.85720 0.86111 0.91361 0.91699 0.91614 0.86352 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 14.32 29.01 0.42 -1.63 16 2 C -0.17 -2.06 9.74 -36.03 -0.35 -2.41 16 3 C 0.13 1.98 5.65 -5.20 -0.03 1.95 16 4 N -0.59 -11.36 2.44 -176.45 -0.43 -11.79 16 5 C 0.22 5.21 4.23 -5.19 -0.02 5.19 16 6 C -0.53 -15.02 9.94 -34.44 -0.34 -15.36 16 7 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 10 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 11 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 14 C 0.50 9.47 7.53 -10.98 -0.08 9.38 16 15 O -0.53 -12.25 14.93 5.56 0.08 -12.17 16 16 C -0.15 -1.92 3.75 -27.88 -0.10 -2.02 16 17 C 0.20 2.83 1.76 -69.08 -0.12 2.71 16 18 H 0.11 1.89 7.19 -51.93 -0.37 1.52 16 19 N -0.71 -9.31 3.55 -54.93 -0.19 -9.51 16 20 C 0.52 7.69 7.88 -10.99 -0.09 7.61 16 21 C -0.17 -1.71 10.39 36.00 0.37 -1.34 16 22 O -0.54 -10.60 16.75 5.56 0.09 -10.51 16 23 C -0.09 -1.16 4.90 -104.62 -0.51 -1.68 16 24 C -0.10 -1.19 9.67 -39.58 -0.38 -1.58 16 25 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 26 C -0.09 -0.90 5.88 -104.63 -0.62 -1.51 16 27 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 28 C -0.12 -1.20 9.70 -39.59 -0.38 -1.59 16 29 C -0.10 -1.06 9.31 -39.58 -0.37 -1.43 16 30 H 0.10 1.13 7.84 -52.49 -0.41 0.72 16 31 H 0.09 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.10 1.11 7.83 -52.49 -0.41 0.70 16 33 H 0.09 1.41 7.72 -51.93 -0.40 1.01 16 34 H 0.08 0.95 6.44 -51.93 -0.33 0.62 16 35 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 36 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.10 1.28 7.40 -51.93 -0.38 0.90 16 39 H 0.09 0.94 7.78 -51.93 -0.40 0.54 16 40 H 0.40 4.13 8.44 -40.82 -0.34 3.79 16 41 H 0.07 0.55 7.92 -51.93 -0.41 0.14 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.12 1.52 8.02 -52.49 -0.42 1.10 16 45 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 48 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 49 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 50 H 0.12 1.02 7.79 -52.49 -0.41 0.61 16 LS Contribution 419.17 15.07 6.32 6.32 Total: -1.00 -37.24 419.17 -8.76 -46.00 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.00 Total: 5.49 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.73 Total: -3.79 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.15 Total: -48.22 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.18 Total: -22.68 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -37.24 -8.76 -46.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359420560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.714 kcal (2) G-P(sol) polarization free energy of solvation -37.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds