Wall clock time and date at job start Wed Apr 1 2020 04:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50693 * 120.00256 * 2 1 4 4 N 1.46497 * 109.47122 * 124.99447 * 3 2 1 5 5 C 1.46496 * 120.00409 * 270.00452 * 4 3 2 6 6 C 1.50704 * 109.47227 * 269.99727 * 5 4 3 7 7 H 1.08008 * 119.99702 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00058 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00187 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 120.00243 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46795 * 90.00030 * 10 8 6 12 12 H 1.48496 * 109.47167 * 209.99919 * 10 8 6 13 13 H 1.48495 * 109.46842 * 329.99876 * 10 8 6 14 14 C 1.34785 * 119.99620 * 90.00265 * 4 3 2 15 15 O 1.21276 * 119.99868 * 180.02562 * 14 4 3 16 16 C 1.50697 * 119.99827 * 0.02562 * 14 4 3 17 17 C 1.53005 * 109.47046 * 179.97438 * 16 14 4 18 18 H 1.08998 * 109.46722 * 304.99934 * 17 16 14 19 19 N 1.46500 * 109.47151 * 64.99520 * 17 16 14 20 20 C 1.34775 * 120.00197 * 203.99872 * 19 17 16 21 21 C 1.50694 * 119.99935 * 184.99738 * 20 19 17 22 22 O 1.21280 * 119.99497 * 5.00581 * 20 19 17 23 23 C 1.50701 * 109.47195 * 184.99761 * 17 16 14 24 24 C 1.38237 * 119.99536 * 102.17182 * 23 17 16 25 25 C 1.38237 * 119.99396 * 179.97438 * 24 23 17 26 26 C 1.38236 * 120.00187 * 0.02562 * 25 24 23 27 27 C 1.50697 * 119.99845 * 179.97438 * 26 25 24 28 28 C 1.38227 * 119.99929 * 359.97438 * 26 25 24 29 29 C 1.38231 * 120.00419 * 359.97438 * 28 26 25 30 30 H 1.07993 * 119.99737 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99854 * 179.97438 * 1 2 3 32 32 H 1.07996 * 119.99764 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47252 * 4.99986 * 3 2 1 34 34 H 1.08995 * 109.47460 * 245.00367 * 3 2 1 35 35 H 1.08992 * 109.47573 * 29.99882 * 5 4 3 36 36 H 1.09002 * 109.47005 * 150.00062 * 5 4 3 37 37 H 0.96999 * 120.00300 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.47617 * 59.99882 * 16 14 4 39 39 H 1.09005 * 109.47209 * 299.99727 * 16 14 4 40 40 H 0.97001 * 119.99823 * 24.00601 * 19 17 16 41 41 H 1.09005 * 109.47447 * 0.02562 * 21 20 19 42 42 H 1.09003 * 109.46954 * 120.00788 * 21 20 19 43 43 H 1.08997 * 109.47501 * 240.00544 * 21 20 19 44 44 H 1.07995 * 120.00309 * 0.25577 * 24 23 17 45 45 H 1.08005 * 119.99678 * 179.97438 * 25 24 23 46 46 H 1.09006 * 109.47112 * 90.00173 * 27 26 25 47 47 H 1.09000 * 109.47028 * 209.99786 * 27 26 25 48 48 H 1.09005 * 109.47435 * 330.00156 * 27 26 25 49 49 H 1.08002 * 120.00057 * 179.97438 * 28 26 25 50 50 H 1.08000 * 120.00530 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3041 3.8368 1.6369 8 6 2.5184 4.0665 3.6083 9 7 2.7671 5.3571 3.6567 10 14 1.7237 3.2132 5.0677 11 1 2.7797 2.7230 5.9896 12 1 0.8469 4.1732 5.7851 13 1 0.9130 2.0651 4.5884 14 6 4.2497 0.8660 0.9825 15 8 5.0196 0.8878 1.9192 16 6 4.6972 0.3182 -0.3482 17 6 6.1538 -0.1395 -0.2475 18 1 6.7695 0.6847 0.1125 19 7 6.2487 -1.2641 0.6865 20 6 7.4152 -1.5270 1.3084 21 6 7.5451 -2.7485 2.1812 22 8 8.3601 -0.7803 1.1657 23 6 6.6393 -0.5728 -1.6067 24 6 7.4464 0.2661 -2.3521 25 6 7.8922 -0.1317 -3.5987 26 6 7.5304 -1.3681 -4.1001 27 6 8.0159 -1.8014 -5.4593 28 6 6.7233 -2.2069 -3.3547 29 6 6.2783 -1.8097 -2.1077 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3587 2.1316 0.0896 34 1 2.6213 1.4026 -0.9313 35 1 1.4888 1.6966 2.5460 36 1 3.0989 1.3601 3.2260 37 1 2.5382 5.8657 4.4502 38 1 4.6127 1.0952 -1.1080 39 1 4.0681 -0.5285 -0.6227 40 1 5.4721 -1.8197 0.8572 41 1 6.6007 -3.2929 2.1874 42 1 8.3328 -3.3925 1.7900 43 1 7.7959 -2.4441 3.1973 44 1 7.7325 1.2303 -1.9587 45 1 8.5225 0.5239 -4.1813 46 1 8.9665 -2.3247 -5.3558 47 1 7.2817 -2.4679 -5.9119 48 1 8.1508 -0.9251 -6.0934 49 1 6.4402 -3.1727 -3.7465 50 1 5.6474 -2.4648 -1.5254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359420560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:01 Heat of formation + Delta-G solvation = -54.406703 kcal Electronic energy + Delta-G solvation = -30476.891120 eV Core-core repulsion = 26468.422478 eV Total energy + Delta-G solvation = -4008.468642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.51602 -40.39402 -39.86648 -37.36808 -36.54903 -35.06058 -33.74455 -33.67308 -32.23103 -31.80137 -30.66757 -29.55205 -27.89651 -26.85787 -25.02813 -23.74555 -23.44063 -21.91886 -21.29106 -21.04475 -19.90346 -19.10392 -18.24587 -17.91955 -17.57652 -17.10666 -16.84332 -16.33935 -16.08515 -15.99226 -15.84054 -15.60592 -15.44561 -14.85518 -14.61324 -14.51343 -14.32467 -14.27921 -14.20624 -13.79339 -13.65900 -13.54846 -13.22928 -13.09448 -13.00322 -12.97558 -12.87354 -12.77667 -12.54979 -12.37196 -12.21413 -12.08042 -11.93856 -11.80297 -11.75088 -10.93537 -10.85209 -10.68412 -10.28703 -10.11907 -9.80047 -9.42904 -9.40328 -8.35631 -6.40636 0.37406 0.52241 1.29402 1.34322 1.36697 1.42999 1.72504 1.79309 2.28912 2.32156 2.38318 2.86076 2.99099 3.51928 3.73966 3.89808 3.95137 4.02659 4.09699 4.13246 4.17200 4.22023 4.30612 4.41271 4.48321 4.50854 4.59300 4.62321 4.65800 4.76147 4.81513 4.86773 4.89019 4.90547 4.94371 4.97499 5.04614 5.11356 5.19769 5.30590 5.44830 5.46190 5.52119 5.54303 5.72157 5.74705 5.75133 5.96030 6.13457 6.22577 6.60131 6.61457 6.70394 7.20344 7.34917 7.42913 8.81567 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.003117 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.928451 B = 8980.271512 C = 9788.732484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.178 4.178 3 C 0.129 3.871 4 N -0.595 5.595 5 C 0.230 3.770 6 C -0.535 4.535 7 H 0.026 0.974 8 C 0.009 3.991 9 N -0.947 5.947 10 Si 0.948 3.052 11 H -0.278 1.278 12 H -0.275 1.275 13 H -0.235 1.235 14 C 0.498 3.502 15 O -0.581 6.581 16 C -0.126 4.126 17 C 0.207 3.793 18 H 0.052 0.948 19 N -0.700 5.700 20 C 0.505 3.495 21 C -0.160 4.160 22 O -0.604 6.604 23 C -0.107 4.107 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.093 4.093 27 C -0.112 4.112 28 C -0.123 4.123 29 C -0.099 4.099 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.046 0.954 36 H 0.018 0.982 37 H 0.268 0.732 38 H 0.116 0.884 39 H 0.137 0.863 40 H 0.412 0.588 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.132 0.868 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.148 0.852 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 -23.534 -17.305 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.197 4.197 3 C 0.007 3.993 4 N -0.325 5.325 5 C 0.108 3.892 6 C -0.574 4.574 7 H 0.045 0.955 8 C -0.189 4.189 9 N -0.587 5.587 10 Si 0.771 3.229 11 H -0.204 1.204 12 H -0.201 1.201 13 H -0.158 1.158 14 C 0.287 3.713 15 O -0.461 6.461 16 C -0.166 4.166 17 C 0.101 3.899 18 H 0.070 0.930 19 N -0.351 5.351 20 C 0.294 3.706 21 C -0.220 4.220 22 O -0.485 6.485 23 C -0.108 4.108 24 C -0.141 4.141 25 C -0.148 4.148 26 C -0.093 4.093 27 C -0.168 4.168 28 C -0.141 4.141 29 C -0.117 4.117 30 H 0.112 0.888 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.155 0.845 40 H 0.249 0.751 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.125 0.875 45 H 0.150 0.850 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.166 0.834 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.668 -22.839 -16.815 28.410 hybrid contribution -0.281 0.960 1.245 1.597 sum 1.388 -21.878 -15.570 26.889 Atomic orbital electron populations 1.24073 0.95681 1.02840 0.98363 1.23297 0.96590 0.98033 1.01785 1.20858 0.92696 0.96791 0.88939 1.47966 1.11937 1.59921 1.12658 1.19223 0.95304 0.91816 0.82883 1.21594 1.40308 0.93757 1.01718 0.95542 1.25876 0.96027 0.95355 1.01621 1.70060 1.49557 1.08600 1.30520 0.85715 0.79004 0.79440 0.78790 1.20375 1.20055 1.15829 1.21151 0.81298 0.77859 0.90959 1.90703 1.53400 1.57910 1.44056 1.22007 0.95780 1.04294 0.94551 1.19228 0.95153 0.89213 0.86309 0.92979 1.45829 1.13233 1.31684 1.44327 1.21559 0.81919 0.87651 0.79467 1.21841 1.06253 0.94355 0.99515 1.90674 1.40927 1.51894 1.65050 1.20024 0.99555 0.96310 0.94929 1.21129 0.97796 0.99683 0.95496 1.21198 1.00827 0.97230 0.95533 1.20301 0.97230 0.93924 0.97835 1.20832 1.01899 1.02352 0.91746 1.21330 0.98071 1.00402 0.94315 1.21102 0.99725 0.94859 0.95996 0.88822 0.86220 0.85543 0.90987 0.87997 0.93599 0.96383 0.92334 0.86580 0.84501 0.75113 0.87479 0.87449 0.89252 0.87541 0.85007 0.90644 0.90043 0.91027 0.83397 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 14.32 67.77 0.97 -2.26 16 2 C -0.18 -3.71 9.74 25.64 0.25 -3.46 16 3 C 0.13 3.61 5.65 85.63 0.48 4.10 16 4 N -0.59 -22.87 2.44 -830.54 -2.03 -24.89 16 5 C 0.23 11.04 4.23 85.64 0.36 11.40 16 6 C -0.54 -31.70 9.94 25.60 0.25 -31.45 16 7 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 8 C 0.01 0.53 5.47 84.65 0.46 1.00 16 9 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 10 Si 0.95 44.84 27.47 68.60 1.88 46.72 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 14 C 0.50 18.93 7.53 87.65 0.66 19.59 16 15 O -0.58 -28.25 14.93 -3.02 -0.05 -28.29 16 16 C -0.13 -3.23 3.75 29.85 0.11 -3.12 16 17 C 0.21 5.98 1.76 44.25 0.08 6.05 16 18 H 0.05 2.07 7.19 -2.39 -0.02 2.05 16 19 N -0.70 -18.01 3.55 -446.10 -1.58 -19.60 16 20 C 0.50 15.20 7.88 87.66 0.69 15.89 16 21 C -0.16 -3.00 10.39 71.23 0.74 -2.26 16 22 O -0.60 -25.03 16.75 -3.03 -0.05 -25.09 16 23 C -0.11 -2.62 4.90 -19.86 -0.10 -2.71 16 24 C -0.12 -3.18 9.67 22.27 0.22 -2.96 16 25 C -0.13 -2.75 9.70 22.27 0.22 -2.54 16 26 C -0.09 -1.61 5.88 -19.87 -0.12 -1.73 16 27 C -0.11 -1.24 10.01 71.23 0.71 -0.53 16 28 C -0.12 -1.97 9.70 22.27 0.22 -1.76 16 29 C -0.10 -1.80 9.31 22.27 0.21 -1.59 16 30 H 0.09 1.87 7.84 -2.91 -0.02 1.85 16 31 H 0.12 1.69 8.06 -2.91 -0.02 1.66 16 32 H 0.13 2.08 7.83 -2.91 -0.02 2.06 16 33 H 0.07 2.25 7.72 -2.39 -0.02 2.24 16 34 H 0.10 2.31 6.44 -2.39 -0.02 2.29 16 35 H 0.05 2.04 7.13 -2.39 -0.02 2.03 16 36 H 0.02 0.93 6.85 -2.39 -0.02 0.92 16 37 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.12 2.75 7.40 -2.39 -0.02 2.74 16 39 H 0.14 2.28 7.78 -2.38 -0.02 2.26 16 40 H 0.41 7.66 8.44 -92.71 -0.78 6.88 16 41 H 0.11 1.24 7.92 -2.38 -0.02 1.22 16 42 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.11 2.99 8.02 -2.91 -0.02 2.97 16 45 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 46 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 48 H 0.07 0.72 8.09 -2.38 -0.02 0.70 16 49 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 50 H 0.14 1.84 7.79 -2.91 -0.02 1.81 16 Total: -1.00 -89.43 419.17 4.99 -84.44 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.09 Total: 25.62 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 6.42 Total: 1.67 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -3.31 Total: -105.08 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.10 Total: -53.38 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -89.43 4.99 -84.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359420560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.032 kcal (2) G-P(sol) polarization free energy of solvation -89.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds