Wall clock time and date at job start Wed Apr 1 2020 04:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 119.99376 * 2 1 4 4 N 1.34769 * 120.00199 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00062 * 184.98960 * 4 2 1 6 6 H 1.08996 * 109.47169 * 33.49224 * 5 4 2 7 7 C 1.52998 * 109.47179 * 153.49523 * 5 4 2 8 8 C 1.50703 * 109.47149 * 294.99720 * 7 5 4 9 9 O 1.21284 * 119.99647 * 3.42856 * 8 7 5 10 10 N 1.34777 * 120.00146 * 183.42952 * 8 7 5 11 11 C 1.46502 * 119.99836 * 184.71945 * 10 8 7 12 12 C 1.52999 * 109.46969 * 184.27874 * 11 10 8 13 13 C 1.50700 * 115.54645 * 294.92283 * 12 11 10 14 14 H 1.07996 * 119.99712 * 119.64075 * 13 12 11 15 15 C 1.37873 * 120.00059 * 299.36216 * 13 12 11 16 16 N 1.31520 * 119.99854 * 174.29583 * 15 13 12 17 17 Si 1.86803 * 120.00223 * 354.29569 * 15 13 12 18 18 H 1.48494 * 109.46715 * 93.90103 * 17 15 13 19 19 H 1.48498 * 109.47189 * 213.90333 * 17 15 13 20 20 H 1.48500 * 109.47052 * 333.89979 * 17 15 13 21 21 C 1.52994 * 117.51925 * 80.62806 * 12 11 10 22 22 C 1.52995 * 60.00325 * 107.47869 * 21 12 11 23 23 C 1.50706 * 109.47220 * 273.49009 * 5 4 2 24 24 C 1.38234 * 119.99758 * 317.12538 * 23 5 4 25 25 C 1.38240 * 119.99613 * 179.76307 * 24 23 5 26 26 C 1.38233 * 120.00020 * 0.50227 * 25 24 23 27 27 C 1.50703 * 120.00123 * 179.72508 * 26 25 24 28 28 C 1.38234 * 119.99971 * 359.74886 * 26 25 24 29 29 C 1.38233 * 120.00012 * 137.39072 * 23 5 4 30 30 H 1.09007 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47203 * 300.00086 * 1 2 3 32 32 H 1.08994 * 109.47332 * 60.00753 * 1 2 3 33 33 H 0.97004 * 120.00335 * 4.99349 * 4 2 1 34 34 H 1.09008 * 109.47176 * 175.00053 * 7 5 4 35 35 H 1.08996 * 109.47904 * 54.99931 * 7 5 4 36 36 H 0.96994 * 120.00054 * 4.71654 * 10 8 7 37 37 H 1.09001 * 109.47309 * 64.27253 * 11 10 8 38 38 H 1.09007 * 109.46842 * 304.27804 * 11 10 8 39 39 H 0.97001 * 119.99771 * 180.02562 * 16 15 13 40 40 H 1.09005 * 117.50106 * 214.96869 * 21 12 11 41 41 H 1.09000 * 117.50025 * 359.97438 * 21 12 11 42 42 H 1.08993 * 117.50262 * 252.51092 * 22 21 12 43 43 H 1.09007 * 117.51847 * 107.47671 * 22 21 12 44 44 H 1.07994 * 120.00450 * 359.97438 * 24 23 5 45 45 H 1.08006 * 119.99827 * 180.22559 * 25 24 23 46 46 H 1.09004 * 109.46901 * 270.02609 * 27 26 25 47 47 H 1.08992 * 109.46930 * 30.02386 * 27 26 25 48 48 H 1.08993 * 109.46988 * 150.02437 * 27 26 25 49 49 H 1.08004 * 120.00197 * 179.97438 * 28 26 25 50 50 H 1.08007 * 120.00001 * 0.02562 * 29 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6418 -1.1694 0.1109 6 1 3.9599 -0.3382 0.7401 7 6 4.1040 -2.4876 0.7350 8 6 3.5971 -2.5778 2.1514 9 8 2.8802 -1.7061 2.5955 10 7 3.9405 -3.6269 2.9246 11 6 3.3659 -3.7683 4.2648 12 6 3.9964 -4.9735 4.9654 13 6 3.7014 -6.3142 4.3438 14 1 4.5101 -6.9294 3.9778 15 6 2.3996 -6.7580 4.2477 16 7 2.1311 -7.8743 3.6061 17 14 1.0171 -5.7739 5.0286 18 1 0.4300 -4.8576 4.0183 19 1 -0.0314 -6.7010 5.5248 20 1 1.5540 -4.9808 6.1636 21 6 5.3723 -4.7789 5.6056 22 6 4.1302 -4.9149 6.4885 23 6 4.2494 -1.0228 -1.2604 24 6 3.7303 -1.7340 -2.3261 25 6 4.2846 -1.5957 -3.5849 26 6 5.3644 -0.7542 -3.7760 27 6 5.9726 -0.6081 -5.1471 28 6 5.8868 -0.0469 -2.7093 29 6 5.3293 -0.1812 -1.4515 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.6987 -2.0057 -0.0722 34 1 5.1934 -2.5270 0.7358 35 1 3.7107 -3.3222 0.1546 36 1 4.5679 -4.2884 2.5936 37 1 2.2891 -3.9168 4.1847 38 1 3.5662 -2.8661 4.8429 39 1 1.2152 -8.1863 3.5381 40 1 6.0643 -5.6207 5.5773 41 1 5.8289 -3.7922 5.5274 42 1 3.7694 -4.0176 6.9912 43 1 4.0044 -5.8461 7.0409 44 1 2.8896 -2.3950 -2.1759 45 1 3.8767 -2.1486 -4.4182 46 1 6.7603 -1.3505 -5.2761 47 1 5.2031 -0.7597 -5.9039 48 1 6.3944 0.3913 -5.2529 49 1 6.7308 0.6103 -2.8585 50 1 5.7378 0.3709 -0.6180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431165098.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:42 Heat of formation + Delta-G solvation = -36.474139 kcal Electronic energy + Delta-G solvation = -30162.527881 eV Core-core repulsion = 26154.836853 eV Total energy + Delta-G solvation = -4007.691028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.40939 -39.12848 -38.86747 -37.12512 -35.53522 -33.45865 -32.78722 -32.26896 -31.15580 -31.01822 -29.24549 -27.57355 -26.50347 -25.12031 -23.24149 -22.83115 -21.65948 -20.99926 -20.26826 -19.88812 -19.22180 -17.39480 -16.79024 -16.65471 -16.36707 -15.83780 -15.37540 -15.28119 -15.14874 -14.87952 -14.80411 -14.43417 -13.99404 -13.81501 -13.52396 -13.44609 -13.24881 -13.07226 -12.87521 -12.80407 -12.51202 -12.46583 -12.24759 -12.19487 -12.07892 -11.85385 -11.48730 -11.27826 -11.13303 -11.02253 -10.75137 -10.63359 -10.32204 -9.80113 -9.73046 -9.47690 -9.25279 -9.06925 -8.98649 -8.89013 -8.61626 -8.54369 -8.33930 -6.25565 -4.27750 1.18479 1.31939 2.77862 3.01576 3.20415 3.27997 3.31759 3.38230 3.54057 3.75970 4.30726 4.60245 4.67337 4.75064 4.77298 4.85582 4.91843 4.93127 5.06971 5.14264 5.17984 5.21935 5.32263 5.35949 5.39630 5.43606 5.54852 5.56971 5.59299 5.63268 5.75816 5.82956 5.90016 5.94776 6.00274 6.08383 6.17299 6.30752 6.39412 6.39767 6.44571 6.46718 6.62283 6.65013 6.86363 6.89826 7.00437 7.09643 7.58114 7.59650 8.09663 8.33910 8.34236 8.68794 8.76515 9.37990 10.85325 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.002878 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.427950 B = 9725.912410 C =10370.310888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.521 3.479 3 O -0.550 6.550 4 N -0.710 5.710 5 C 0.205 3.795 6 H 0.102 0.898 7 C -0.148 4.148 8 C 0.503 3.497 9 O -0.548 6.548 10 N -0.701 5.701 11 C 0.154 3.846 12 C -0.017 4.017 13 C -0.490 4.490 14 H 0.078 0.922 15 C 0.083 3.917 16 N -0.891 5.891 17 Si 0.870 3.130 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.252 1.252 21 C -0.180 4.180 22 C -0.188 4.188 23 C -0.095 4.095 24 C -0.100 4.100 25 C -0.122 4.122 26 C -0.090 4.090 27 C -0.113 4.113 28 C -0.121 4.121 29 C -0.097 4.097 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.399 0.601 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.407 0.593 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.266 0.734 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.120 0.880 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 11.843 -13.866 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.308 3.692 3 O -0.428 6.428 4 N -0.361 5.361 5 C 0.100 3.900 6 H 0.120 0.880 7 C -0.188 4.188 8 C 0.288 3.712 9 O -0.426 6.426 10 N -0.351 5.351 11 C 0.030 3.970 12 C -0.018 4.018 13 C -0.526 4.526 14 H 0.096 0.904 15 C -0.120 4.120 16 N -0.528 5.528 17 Si 0.698 3.302 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.176 1.176 21 C -0.217 4.217 22 C -0.227 4.227 23 C -0.097 4.097 24 C -0.118 4.118 25 C -0.140 4.140 26 C -0.090 4.090 27 C -0.170 4.170 28 C -0.139 4.139 29 C -0.116 4.116 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.242 0.758 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.138 0.862 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.567 13.058 -13.561 19.161 hybrid contribution -0.840 -0.530 0.309 1.040 sum 2.728 12.528 -13.252 18.439 Atomic orbital electron populations 1.21823 0.92131 1.04134 1.04866 1.20613 0.90338 0.83429 0.74789 1.90685 1.70730 1.31409 1.49928 1.45916 1.06612 1.08927 1.74643 1.19445 0.80245 0.98225 0.92121 0.87989 1.22016 1.03775 0.98668 0.94372 1.20424 0.81378 0.82061 0.87359 1.90700 1.38175 1.39217 1.74554 1.45869 1.46787 1.25731 1.16693 1.21075 0.97099 0.96711 0.82072 1.19599 0.95920 0.95026 0.91266 1.20254 0.93766 0.99128 1.39500 0.90366 1.24913 0.98602 0.94636 0.93879 1.69895 1.20281 1.22035 1.40566 0.87005 0.81993 0.80089 0.81123 1.20516 1.21922 1.17566 1.22771 0.91494 1.00511 1.06946 1.23045 1.02798 1.01232 0.95576 1.20173 0.96513 0.97481 0.95509 1.20905 0.99546 0.98973 0.92375 1.20985 0.96684 0.99235 0.97136 1.19915 0.96251 0.97076 0.95755 1.20781 1.00733 1.02266 0.93238 1.20985 1.00290 1.00147 0.92480 1.21002 0.95716 0.97562 0.97289 0.90687 0.88781 0.89202 0.76677 0.87468 0.88037 0.75776 0.92668 0.93201 0.92428 0.89628 0.90890 0.91152 0.89280 0.86267 0.86229 0.91209 0.91692 0.91679 0.86160 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.39 36.01 0.37 -1.39 16 2 C 0.52 7.46 7.90 -10.99 -0.09 7.37 16 3 O -0.55 -10.01 16.79 5.56 0.09 -9.92 16 4 N -0.71 -9.09 3.47 -54.93 -0.19 -9.28 16 5 C 0.21 2.65 1.71 -69.08 -0.12 2.54 16 6 H 0.10 1.58 7.30 -51.93 -0.38 1.20 16 7 C -0.15 -1.79 5.21 -27.88 -0.15 -1.93 16 8 C 0.50 8.32 7.70 -10.98 -0.08 8.23 16 9 O -0.55 -10.89 15.30 5.55 0.08 -10.80 16 10 N -0.70 -12.40 5.48 -60.29 -0.33 -12.73 16 11 C 0.15 3.16 5.09 -4.04 -0.02 3.14 16 12 C -0.02 -0.36 0.84 -155.66 -0.13 -0.49 16 13 C -0.49 -12.36 9.18 -34.44 -0.32 -12.68 16 14 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 15 C 0.08 2.22 5.46 -17.82 -0.10 2.12 16 16 N -0.89 -25.33 13.96 55.43 0.77 -24.56 16 17 Si 0.87 20.70 24.73 -169.99 -4.20 16.50 16 18 H -0.28 -6.68 6.98 56.52 0.39 -6.28 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.25 -5.73 6.03 56.52 0.34 -5.39 16 21 C -0.18 -3.35 9.95 -26.74 -0.27 -3.62 16 22 C -0.19 -3.75 8.54 -26.73 -0.23 -3.98 16 23 C -0.10 -1.13 4.92 -104.62 -0.52 -1.65 16 24 C -0.10 -1.08 9.31 -39.58 -0.37 -1.45 16 25 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 26 C -0.09 -0.88 5.88 -104.62 -0.62 -1.50 16 27 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 28 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 29 C -0.10 -1.12 9.67 -39.58 -0.38 -1.50 16 30 H 0.07 0.64 7.92 -51.92 -0.41 0.23 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.40 4.35 8.46 -40.82 -0.35 4.01 16 34 H 0.11 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.41 6.71 8.34 -40.82 -0.34 6.37 16 37 H 0.06 1.26 4.43 -51.93 -0.23 1.03 16 38 H 0.05 1.00 8.07 -51.93 -0.42 0.59 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 44 H 0.12 1.13 7.81 -52.49 -0.41 0.72 16 45 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 48 H 0.06 0.41 8.08 -51.93 -0.42 0.00 16 49 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 50 H 0.12 1.31 8.02 -52.48 -0.42 0.89 16 LS Contribution 413.31 15.07 6.23 6.23 Total: -1.00 -33.11 413.31 -9.03 -42.14 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -8.07 Total: 12.91 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.41 Total: -10.49 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.25 Total: -46.56 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.18 Total: -20.72 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.20 Total: 16.50 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.11 -9.03 -42.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431165098.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.667 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds