Wall clock time and date at job start Wed Apr 1 2020 04:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 119.99376 * 2 1 4 4 N 1.34769 * 120.00199 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00062 * 184.98960 * 4 2 1 6 6 H 1.08996 * 109.47169 * 33.49224 * 5 4 2 7 7 C 1.52998 * 109.47179 * 153.49523 * 5 4 2 8 8 C 1.50703 * 109.47149 * 294.99720 * 7 5 4 9 9 O 1.21284 * 119.99647 * 3.42856 * 8 7 5 10 10 N 1.34777 * 120.00146 * 183.42952 * 8 7 5 11 11 C 1.46502 * 119.99836 * 184.71945 * 10 8 7 12 12 C 1.52999 * 109.46969 * 184.27874 * 11 10 8 13 13 C 1.50700 * 115.54645 * 294.92283 * 12 11 10 14 14 H 1.07996 * 119.99712 * 119.64075 * 13 12 11 15 15 C 1.37873 * 120.00059 * 299.36216 * 13 12 11 16 16 N 1.31520 * 119.99854 * 174.29583 * 15 13 12 17 17 Si 1.86803 * 120.00223 * 354.29569 * 15 13 12 18 18 H 1.48494 * 109.46715 * 93.90103 * 17 15 13 19 19 H 1.48498 * 109.47189 * 213.90333 * 17 15 13 20 20 H 1.48500 * 109.47052 * 333.89979 * 17 15 13 21 21 C 1.52994 * 117.51925 * 80.62806 * 12 11 10 22 22 C 1.52995 * 60.00325 * 107.47869 * 21 12 11 23 23 C 1.50706 * 109.47220 * 273.49009 * 5 4 2 24 24 C 1.38234 * 119.99758 * 317.12538 * 23 5 4 25 25 C 1.38240 * 119.99613 * 179.76307 * 24 23 5 26 26 C 1.38233 * 120.00020 * 0.50227 * 25 24 23 27 27 C 1.50703 * 120.00123 * 179.72508 * 26 25 24 28 28 C 1.38234 * 119.99971 * 359.74886 * 26 25 24 29 29 C 1.38233 * 120.00012 * 137.39072 * 23 5 4 30 30 H 1.09007 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47203 * 300.00086 * 1 2 3 32 32 H 1.08994 * 109.47332 * 60.00753 * 1 2 3 33 33 H 0.97004 * 120.00335 * 4.99349 * 4 2 1 34 34 H 1.09008 * 109.47176 * 175.00053 * 7 5 4 35 35 H 1.08996 * 109.47904 * 54.99931 * 7 5 4 36 36 H 0.96994 * 120.00054 * 4.71654 * 10 8 7 37 37 H 1.09001 * 109.47309 * 64.27253 * 11 10 8 38 38 H 1.09007 * 109.46842 * 304.27804 * 11 10 8 39 39 H 0.97001 * 119.99771 * 180.02562 * 16 15 13 40 40 H 1.09005 * 117.50106 * 214.96869 * 21 12 11 41 41 H 1.09000 * 117.50025 * 359.97438 * 21 12 11 42 42 H 1.08993 * 117.50262 * 252.51092 * 22 21 12 43 43 H 1.09007 * 117.51847 * 107.47671 * 22 21 12 44 44 H 1.07994 * 120.00450 * 359.97438 * 24 23 5 45 45 H 1.08006 * 119.99827 * 180.22559 * 25 24 23 46 46 H 1.09004 * 109.46901 * 270.02609 * 27 26 25 47 47 H 1.08992 * 109.46930 * 30.02386 * 27 26 25 48 48 H 1.08993 * 109.46988 * 150.02437 * 27 26 25 49 49 H 1.08004 * 120.00197 * 179.97438 * 28 26 25 50 50 H 1.08007 * 120.00001 * 0.02562 * 29 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6418 -1.1694 0.1109 6 1 3.9599 -0.3382 0.7401 7 6 4.1040 -2.4876 0.7350 8 6 3.5971 -2.5778 2.1514 9 8 2.8802 -1.7061 2.5955 10 7 3.9405 -3.6269 2.9246 11 6 3.3659 -3.7683 4.2648 12 6 3.9964 -4.9735 4.9654 13 6 3.7014 -6.3142 4.3438 14 1 4.5101 -6.9294 3.9778 15 6 2.3996 -6.7580 4.2477 16 7 2.1311 -7.8743 3.6061 17 14 1.0171 -5.7739 5.0286 18 1 0.4300 -4.8576 4.0183 19 1 -0.0314 -6.7010 5.5248 20 1 1.5540 -4.9808 6.1636 21 6 5.3723 -4.7789 5.6056 22 6 4.1302 -4.9149 6.4885 23 6 4.2494 -1.0228 -1.2604 24 6 3.7303 -1.7340 -2.3261 25 6 4.2846 -1.5957 -3.5849 26 6 5.3644 -0.7542 -3.7760 27 6 5.9726 -0.6081 -5.1471 28 6 5.8868 -0.0469 -2.7093 29 6 5.3293 -0.1812 -1.4515 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.6987 -2.0057 -0.0722 34 1 5.1934 -2.5270 0.7358 35 1 3.7107 -3.3222 0.1546 36 1 4.5679 -4.2884 2.5936 37 1 2.2891 -3.9168 4.1847 38 1 3.5662 -2.8661 4.8429 39 1 1.2152 -8.1863 3.5381 40 1 6.0643 -5.6207 5.5773 41 1 5.8289 -3.7922 5.5274 42 1 3.7694 -4.0176 6.9912 43 1 4.0044 -5.8461 7.0409 44 1 2.8896 -2.3950 -2.1759 45 1 3.8767 -2.1486 -4.4182 46 1 6.7603 -1.3505 -5.2761 47 1 5.2031 -0.7597 -5.9039 48 1 6.3944 0.3913 -5.2529 49 1 6.7308 0.6103 -2.8585 50 1 5.7378 0.3709 -0.6180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431165098.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:41 Heat of formation + Delta-G solvation = -57.453243 kcal Electronic energy + Delta-G solvation = -30163.437604 eV Core-core repulsion = 26154.836853 eV Total energy + Delta-G solvation = -4008.600750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.47965 -40.37936 -39.87523 -38.71511 -36.60541 -34.93889 -34.28052 -33.69496 -32.11321 -31.80711 -30.24048 -28.73348 -27.88735 -26.73597 -24.22454 -23.66786 -23.20388 -21.93312 -21.38744 -21.20533 -20.86849 -18.79279 -18.15065 -17.86285 -17.48346 -17.04860 -16.92900 -16.56818 -16.17135 -16.04321 -15.86880 -15.53904 -15.36296 -14.91884 -14.74810 -14.52755 -14.45622 -14.29338 -14.20531 -13.94044 -13.81136 -13.53610 -13.24947 -13.04042 -13.01658 -12.99957 -12.83772 -12.60333 -12.41798 -12.19281 -12.10796 -12.06677 -11.80900 -11.49086 -11.08761 -10.95378 -10.90655 -10.71059 -10.36028 -10.13327 -9.87144 -9.80525 -9.40743 -8.31374 -6.34265 0.37308 0.51813 1.30130 1.38104 1.47995 1.67215 1.71848 2.26013 2.32075 2.33416 2.85826 2.98640 3.35544 3.66548 3.74017 3.89595 3.95693 4.00986 4.07068 4.15158 4.16225 4.26711 4.32094 4.43340 4.45736 4.47676 4.53022 4.59254 4.60865 4.62541 4.79462 4.82232 4.85826 4.87730 4.90621 4.96114 5.01289 5.06190 5.19300 5.25176 5.28968 5.43143 5.49257 5.51372 5.59235 5.68914 5.71433 5.72830 6.12600 6.30492 6.56389 6.68127 6.76696 7.28886 7.32882 7.34446 8.82896 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.002878 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.427950 B = 9725.912410 C =10370.310888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.510 3.490 3 O -0.597 6.597 4 N -0.704 5.704 5 C 0.210 3.790 6 H 0.071 0.929 7 C -0.135 4.135 8 C 0.503 3.497 9 O -0.581 6.581 10 N -0.702 5.702 11 C 0.161 3.839 12 C -0.039 4.039 13 C -0.476 4.476 14 H 0.047 0.953 15 C 0.038 3.962 16 N -0.936 5.936 17 Si 0.918 3.082 18 H -0.283 1.283 19 H -0.299 1.299 20 H -0.235 1.235 21 C -0.155 4.155 22 C -0.188 4.188 23 C -0.108 4.108 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.094 4.094 27 C -0.112 4.112 28 C -0.129 4.129 29 C -0.115 4.115 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.408 0.592 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.413 0.587 37 H 0.032 0.968 38 H 0.056 0.944 39 H 0.265 0.735 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.131 0.869 45 H 0.140 0.860 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.137 0.863 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 12.532 -14.788 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.479 6.479 4 N -0.355 5.355 5 C 0.104 3.896 6 H 0.089 0.911 7 C -0.175 4.175 8 C 0.291 3.709 9 O -0.462 6.462 10 N -0.352 5.352 11 C 0.037 3.963 12 C -0.040 4.040 13 C -0.513 4.513 14 H 0.065 0.935 15 C -0.161 4.161 16 N -0.576 5.576 17 Si 0.745 3.255 18 H -0.210 1.210 19 H -0.226 1.226 20 H -0.158 1.158 21 C -0.192 4.192 22 C -0.226 4.226 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.147 4.147 26 C -0.094 4.094 27 C -0.169 4.169 28 C -0.147 4.147 29 C -0.133 4.133 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.245 0.755 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.249 0.751 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.149 0.851 45 H 0.158 0.842 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.155 0.845 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.092 13.723 -14.480 20.365 hybrid contribution -0.892 -0.750 0.565 1.295 sum 3.200 12.973 -13.914 19.291 Atomic orbital electron populations 1.21848 0.89130 1.05779 1.05606 1.21345 0.91932 0.82990 0.73809 1.90656 1.71966 1.32993 1.52251 1.45944 1.06776 1.09117 1.73653 1.19297 0.80421 0.97299 0.92542 0.91130 1.22004 1.05143 0.99003 0.91320 1.21090 0.80406 0.80885 0.88562 1.90688 1.39682 1.40308 1.75537 1.45858 1.46942 1.26315 1.16077 1.20836 0.95763 0.96292 0.83448 1.19456 0.98901 0.93375 0.92266 1.20367 0.92531 1.00240 1.38168 0.93459 1.25501 1.00699 0.95304 0.94582 1.70003 1.20616 1.23989 1.42959 0.86228 0.79616 0.78792 0.80818 1.20960 1.22607 1.15776 1.22811 0.90368 1.01899 1.04135 1.23085 1.03494 1.01793 0.94238 1.20066 0.97104 0.98637 0.95078 1.21081 0.99879 0.99027 0.92433 1.21293 0.96685 0.99313 0.97423 1.20294 0.95981 0.96277 0.96858 1.20830 1.01196 1.03087 0.91759 1.21239 1.00804 1.00503 0.92149 1.21153 0.96178 0.97951 0.98036 0.88589 0.88924 0.87471 0.75541 0.85138 0.85937 0.75087 0.94971 0.92606 0.92575 0.89546 0.88394 0.89296 0.90040 0.85122 0.84236 0.90201 0.90723 0.90912 0.84510 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.39 71.24 0.74 -2.48 16 2 C 0.51 14.57 7.90 87.66 0.69 15.27 16 3 O -0.60 -22.33 16.79 -3.04 -0.05 -22.38 16 4 N -0.70 -17.66 3.47 -446.10 -1.55 -19.21 16 5 C 0.21 5.38 1.71 44.25 0.08 5.46 16 6 H 0.07 2.27 7.30 -2.39 -0.02 2.25 16 7 C -0.13 -3.08 5.21 29.85 0.16 -2.93 16 8 C 0.50 16.15 7.70 87.66 0.68 16.83 16 9 O -0.58 -22.90 15.30 -3.04 -0.05 -22.95 16 10 N -0.70 -23.94 5.48 -463.04 -2.54 -26.48 16 11 C 0.16 6.37 5.09 86.38 0.44 6.81 16 12 C -0.04 -1.59 0.84 -52.93 -0.04 -1.64 16 13 C -0.48 -23.99 9.18 25.60 0.24 -23.75 16 14 H 0.05 2.63 8.06 -2.91 -0.02 2.61 16 15 C 0.04 2.05 5.46 84.65 0.46 2.51 16 16 N -0.94 -54.15 13.96 21.45 0.30 -53.85 16 17 Si 0.92 42.67 24.73 68.60 1.70 44.37 16 18 H -0.28 -13.23 6.98 99.48 0.69 -12.53 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 20 H -0.23 -10.12 6.03 99.48 0.60 -9.52 16 21 C -0.16 -5.36 9.95 30.59 0.30 -5.06 16 22 C -0.19 -7.03 8.54 30.59 0.26 -6.77 16 23 C -0.11 -2.49 4.92 -19.86 -0.10 -2.59 16 24 C -0.11 -2.13 9.31 22.27 0.21 -1.93 16 25 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 26 C -0.09 -1.67 5.88 -19.87 -0.12 -1.79 16 27 C -0.11 -1.32 10.01 71.24 0.71 -0.61 16 28 C -0.13 -2.51 9.70 22.27 0.22 -2.30 16 29 C -0.11 -2.61 9.67 22.27 0.22 -2.40 16 30 H 0.10 1.44 7.92 -2.38 -0.02 1.42 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.41 8.43 8.46 -92.71 -0.78 7.65 16 34 H 0.13 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.41 13.05 8.34 -92.71 -0.77 12.28 16 37 H 0.03 1.43 4.43 -2.39 -0.01 1.42 16 38 H 0.06 2.14 8.07 -2.38 -0.02 2.12 16 39 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 41 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 43 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 44 H 0.13 2.22 7.81 -2.91 -0.02 2.20 16 45 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 46 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 48 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 49 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 50 H 0.12 2.66 8.02 -2.91 -0.02 2.64 16 Total: -1.00 -72.94 413.31 2.44 -70.50 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -0.72 Total: 39.47 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.35 Total: -9.47 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -3.78 Total: -99.54 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.10 Total: -45.33 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.70 Total: 44.37 kcal Total: -72.94 2.44 -70.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431165098.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.044 kcal (2) G-P(sol) polarization free energy of solvation -72.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds