Wall clock time and date at job start Wed Apr 1 2020 04:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38255 * 120.00186 * 2 1 4 4 C 1.38216 * 120.00177 * 180.25339 * 3 2 1 5 5 C 1.38261 * 119.99411 * 359.51315 * 4 3 2 6 6 C 1.38208 * 120.00184 * 0.44438 * 5 4 3 7 7 C 1.38212 * 119.99925 * 179.97438 * 2 1 3 8 8 C 1.50698 * 120.00011 * 359.97423 * 7 2 1 9 9 H 1.09008 * 109.56669 * 5.83831 * 8 7 2 10 10 C 1.50437 * 109.56898 * 126.07052 * 8 7 2 11 11 O 1.21279 * 118.49348 * 287.11957 * 10 8 7 12 12 N 1.33623 * 122.84589 * 107.08451 * 10 8 7 13 13 C 1.45646 * 124.65329 * 4.42381 * 12 10 8 14 14 C 1.52992 * 110.77420 * 338.03947 * 13 12 10 15 15 N 1.47052 * 109.57205 * 245.60116 * 8 7 2 16 16 C 1.34770 * 121.35313 * 102.89193 * 15 8 7 17 17 O 1.21274 * 120.00228 * 0.02562 * 16 15 8 18 18 C 1.50704 * 119.99999 * 180.02562 * 16 15 8 19 19 C 1.52998 * 109.47098 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47047 * 179.97438 * 19 18 16 21 21 C 1.52998 * 109.47047 * 180.02562 * 20 19 18 22 22 C 1.50701 * 109.46773 * 179.97438 * 21 20 19 23 23 H 1.07998 * 120.00103 * 0.02562 * 22 21 20 24 24 C 1.37880 * 120.00098 * 179.97438 * 22 21 20 25 25 N 1.31514 * 120.00283 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99552 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47297 * 89.99553 * 26 24 22 28 28 H 1.48503 * 109.46867 * 209.99542 * 26 24 22 29 29 H 1.48495 * 109.47174 * 329.99540 * 26 24 22 30 30 H 1.09002 * 109.46594 * 96.08210 * 1 2 3 31 31 H 1.08998 * 109.46914 * 216.07994 * 1 2 3 32 32 H 1.08998 * 109.47021 * 336.08450 * 1 2 3 33 33 H 1.08003 * 119.99676 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.99963 * 179.72248 * 4 3 2 35 35 H 1.08003 * 119.99195 * 180.27222 * 5 4 3 36 36 H 1.08003 * 119.99833 * 179.83569 * 6 5 4 37 37 H 0.96997 * 117.63962 * 184.34210 * 12 10 8 38 38 H 1.09002 * 109.21551 * 217.71066 * 13 12 10 39 39 H 1.09002 * 109.21911 * 98.37699 * 13 12 10 40 40 H 1.09000 * 109.72082 * 287.05914 * 14 13 12 41 41 H 1.08995 * 109.71918 * 166.39654 * 14 13 12 42 42 H 1.09000 * 109.47277 * 300.00495 * 18 16 15 43 43 H 1.09002 * 109.46885 * 60.00201 * 18 16 15 44 44 H 1.08994 * 109.47639 * 299.99980 * 19 18 16 45 45 H 1.09002 * 109.47007 * 60.00376 * 19 18 16 46 46 H 1.09000 * 109.47384 * 300.00630 * 20 19 18 47 47 H 1.09002 * 109.46828 * 60.00367 * 20 19 18 48 48 H 1.09000 * 109.47317 * 299.99782 * 21 20 19 49 49 H 1.09002 * 109.47007 * 60.00476 * 21 20 19 50 50 H 0.97002 * 119.99608 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0053 5 6 4.2717 -0.0001 -0.0004 6 6 3.5806 -1.1970 0.0005 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5020 0.0017 9 1 0.3771 -2.3074 -0.1025 10 6 1.9150 -3.3565 -1.1436 11 8 1.5840 -3.0488 -2.2691 12 7 2.6813 -4.4379 -0.9741 13 6 3.0782 -4.9771 0.3194 14 6 2.9880 -3.9036 1.4056 15 7 1.6944 -3.2140 1.2639 16 6 0.7772 -3.2341 2.2511 17 8 -0.2802 -2.6577 2.1082 18 6 1.0654 -3.9729 3.5326 19 6 -0.1297 -3.8390 4.4784 20 6 0.1627 -4.5897 5.7792 21 6 -1.0327 -4.4563 6.7247 22 6 -0.7449 -5.1962 8.0057 23 1 0.1966 -5.7097 8.1328 24 6 -1.6831 -5.2166 9.0158 25 7 -1.4322 -5.8626 10.1335 26 14 -3.3113 -4.3276 8.7961 27 1 -4.3036 -5.2537 8.1935 28 1 -3.8050 -3.8651 10.1181 29 1 -3.1198 -3.1574 7.9022 30 1 -0.3632 -0.1089 -1.0219 31 1 -0.3633 -0.8305 0.6052 32 1 -0.3633 0.9394 0.4166 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1326 -0.0098 35 1 5.3518 0.0000 -0.0001 36 1 4.1206 -2.1323 0.0016 37 1 2.9943 -4.8968 -1.7693 38 1 4.1045 -5.3393 0.2574 39 1 2.4208 -5.8068 0.5793 40 1 3.8014 -3.1882 1.2842 41 1 3.0506 -4.3693 2.3891 42 1 1.2396 -5.0264 3.3134 43 1 1.9515 -3.5488 4.0050 44 1 -0.3034 -2.7856 4.6976 45 1 -1.0160 -4.2629 4.0061 46 1 0.3362 -5.6431 5.5597 47 1 1.0491 -4.1662 6.2516 48 1 -1.2065 -3.4029 6.9443 49 1 -1.9188 -4.8800 6.2521 50 1 -2.0925 -5.8773 10.8439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588679321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:44 Heat of formation + Delta-G solvation = -53.821042 kcal Electronic energy + Delta-G solvation = -30372.446903 eV Core-core repulsion = 26364.003657 eV Total energy + Delta-G solvation = -4008.443246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.59077 -39.43878 -39.27936 -36.95246 -35.20090 -34.66159 -33.31301 -32.66743 -32.02613 -30.19778 -29.88032 -27.74400 -26.89135 -25.57820 -24.61700 -22.59605 -22.22645 -21.60321 -20.21119 -20.08068 -19.10037 -17.89564 -17.54972 -16.95086 -16.75204 -16.49399 -16.17774 -15.88030 -15.72940 -15.34319 -14.78433 -14.59209 -14.22192 -14.14649 -13.90780 -13.76948 -13.47734 -13.31134 -13.06985 -12.70062 -12.63739 -12.45388 -12.43617 -12.29160 -12.20015 -12.02930 -11.76499 -11.41568 -11.24457 -11.15106 -10.77671 -10.66485 -10.58018 -10.06056 -9.86656 -9.68008 -9.63769 -9.50615 -9.16499 -9.13608 -9.07687 -8.89700 -8.51159 -6.02450 -4.00051 0.89406 1.07173 2.13235 2.41811 2.46258 2.76466 3.34031 3.41309 3.44595 3.46967 3.96412 4.11980 4.28463 4.39026 4.48470 4.49247 4.52394 4.60241 4.70604 4.73695 4.93953 4.96930 5.06290 5.11473 5.18248 5.21442 5.28291 5.32518 5.40679 5.49472 5.57647 5.63994 5.70334 5.79041 5.96305 6.01848 6.07679 6.09903 6.17001 6.26364 6.31285 6.35979 6.63241 6.65136 6.74650 6.77083 6.94122 7.00235 7.35141 7.48061 7.68629 7.82655 7.95062 8.55984 9.02339 9.61003 11.11013 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.002397 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.452424 B =11676.602779 C =12417.420854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 C -0.121 4.121 4 C -0.107 4.107 5 C -0.128 4.128 6 C -0.105 4.105 7 C -0.094 4.094 8 C 0.168 3.832 9 H 0.140 0.860 10 C 0.525 3.475 11 O -0.536 6.536 12 N -0.719 5.719 13 C 0.093 3.907 14 C 0.080 3.920 15 N -0.617 5.617 16 C 0.522 3.478 17 O -0.524 6.524 18 C -0.136 4.136 19 C -0.107 4.107 20 C -0.102 4.102 21 C -0.015 4.015 22 C -0.520 4.520 23 H 0.071 0.929 24 C 0.065 3.935 25 N -0.906 5.906 26 Si 0.879 3.121 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.264 1.264 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.402 0.598 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.015 0.985 49 H 0.011 0.989 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.114 8.230 -24.961 30.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.126 4.126 5 C -0.146 4.146 6 C -0.123 4.123 7 C -0.096 4.096 8 C 0.062 3.938 9 H 0.157 0.843 10 C 0.310 3.690 11 O -0.411 6.411 12 N -0.372 5.372 13 C -0.032 4.032 14 C -0.043 4.043 15 N -0.353 5.353 16 C 0.312 3.688 17 O -0.398 6.398 18 C -0.176 4.176 19 C -0.145 4.145 20 C -0.139 4.139 21 C -0.053 4.053 22 C -0.558 4.558 23 H 0.089 0.911 24 C -0.136 4.136 25 N -0.545 5.545 26 Si 0.707 3.293 27 H -0.203 1.203 28 H -0.215 1.215 29 H -0.189 1.189 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.237 0.763 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.034 0.966 49 H 0.029 0.971 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.157 8.759 -25.213 30.213 hybrid contribution -0.460 0.106 -0.192 0.510 sum 13.697 8.865 -25.406 30.193 Atomic orbital electron populations 1.21053 0.90679 1.04226 1.03015 1.19818 0.96521 0.92168 0.96700 1.21080 0.94306 0.97446 1.01047 1.21198 0.94316 0.98151 0.98895 1.21068 0.99869 0.92303 1.01342 1.21049 0.93237 0.98363 0.99646 1.19433 0.93627 0.92987 1.03567 1.20196 1.03081 0.88794 0.81740 0.84305 1.20102 0.77771 0.80787 0.90351 1.90793 1.55893 1.70110 1.24349 1.45397 1.52394 1.29494 1.09887 1.21826 1.01835 0.96716 0.82827 1.22310 0.86306 0.95021 1.00631 1.48443 1.17679 1.53267 1.15931 1.21181 0.82800 0.80129 0.84670 1.90681 1.24495 1.44444 1.80227 1.21825 1.02474 1.00852 0.92427 1.21510 0.95753 1.01954 0.95261 1.21471 1.00159 0.98809 0.93499 1.19572 0.93790 0.96890 0.95013 1.21174 1.03951 1.32436 0.98213 0.91112 1.25041 0.98449 0.95018 0.95076 1.69919 1.35585 1.42999 1.06002 0.86780 0.84240 0.80904 0.77413 1.20312 1.21458 1.18891 0.90710 0.89411 0.91195 0.85645 0.85833 0.85864 0.86130 0.76265 0.88808 0.90583 0.89586 0.86750 0.88766 0.88726 0.91677 0.91691 0.92847 0.92820 0.96622 0.97064 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.13 36.01 0.33 -1.09 16 2 C -0.05 -0.57 5.88 -104.62 -0.62 -1.18 16 3 C -0.12 -1.15 9.68 -39.58 -0.38 -1.53 16 4 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 5 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 6 C -0.10 -0.96 8.23 -39.59 -0.33 -1.28 16 7 C -0.09 -1.03 5.02 -104.63 -0.52 -1.56 16 8 C 0.17 1.87 2.48 -70.06 -0.17 1.70 16 9 H 0.14 1.81 4.91 -51.92 -0.26 1.55 16 10 C 0.52 5.76 6.49 -11.63 -0.08 5.68 16 11 O -0.54 -7.81 17.81 5.56 0.10 -7.71 16 12 N -0.72 -5.06 5.43 -61.26 -0.33 -5.39 16 13 C 0.09 0.39 7.34 -4.51 -0.03 0.36 16 14 C 0.08 0.45 6.01 -3.62 -0.02 0.43 16 15 N -0.62 -5.98 2.61 -167.87 -0.44 -6.42 16 16 C 0.52 6.48 7.72 -10.99 -0.08 6.40 16 17 O -0.52 -8.41 14.19 5.56 0.08 -8.33 16 18 C -0.14 -1.53 4.07 -27.88 -0.11 -1.64 16 19 C -0.11 -1.68 4.50 -26.73 -0.12 -1.80 16 20 C -0.10 -1.90 5.15 -26.73 -0.14 -2.04 16 21 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 22 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 23 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 24 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 25 N -0.91 -28.09 13.96 55.43 0.77 -27.31 16 26 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.10 5.15 -51.93 -0.27 0.83 16 32 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 33 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 36 H 0.12 0.87 5.74 -52.48 -0.30 0.57 16 37 H 0.40 2.29 8.80 -40.82 -0.36 1.93 16 38 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.42 5.23 -51.93 -0.27 0.15 16 41 H 0.11 0.45 6.03 -51.93 -0.31 0.13 16 42 H 0.09 0.85 7.87 -51.93 -0.41 0.44 16 43 H 0.09 0.89 7.83 -51.93 -0.41 0.49 16 44 H 0.06 1.10 8.10 -51.93 -0.42 0.67 16 45 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 49 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 50 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -36.76 394.95 -9.73 -46.49 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.58 Total: -0.59 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.62 Total: -14.13 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.00 Total: -39.12 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.18 Total: -16.04 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.76 -9.73 -46.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588679321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.329 kcal (2) G-P(sol) polarization free energy of solvation -36.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds