Wall clock time and date at job start Wed Apr 1 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38255 * 120.00186 * 2 1 4 4 C 1.38216 * 120.00177 * 180.25339 * 3 2 1 5 5 C 1.38261 * 119.99411 * 359.51315 * 4 3 2 6 6 C 1.38208 * 120.00184 * 0.44438 * 5 4 3 7 7 C 1.38212 * 119.99925 * 179.97438 * 2 1 3 8 8 C 1.50698 * 120.00011 * 359.97423 * 7 2 1 9 9 H 1.09008 * 109.56669 * 5.83831 * 8 7 2 10 10 C 1.50437 * 109.56898 * 126.07052 * 8 7 2 11 11 O 1.21279 * 118.49348 * 287.11957 * 10 8 7 12 12 N 1.33623 * 122.84589 * 107.08451 * 10 8 7 13 13 C 1.45646 * 124.65329 * 4.42381 * 12 10 8 14 14 C 1.52992 * 110.77420 * 338.03947 * 13 12 10 15 15 N 1.47052 * 109.57205 * 245.60116 * 8 7 2 16 16 C 1.34770 * 121.35313 * 102.89193 * 15 8 7 17 17 O 1.21274 * 120.00228 * 0.02562 * 16 15 8 18 18 C 1.50704 * 119.99999 * 180.02562 * 16 15 8 19 19 C 1.52998 * 109.47098 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47047 * 179.97438 * 19 18 16 21 21 C 1.52998 * 109.47047 * 180.02562 * 20 19 18 22 22 C 1.50701 * 109.46773 * 179.97438 * 21 20 19 23 23 H 1.07998 * 120.00103 * 0.02562 * 22 21 20 24 24 C 1.37880 * 120.00098 * 179.97438 * 22 21 20 25 25 N 1.31514 * 120.00283 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99552 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47297 * 89.99553 * 26 24 22 28 28 H 1.48503 * 109.46867 * 209.99542 * 26 24 22 29 29 H 1.48495 * 109.47174 * 329.99540 * 26 24 22 30 30 H 1.09002 * 109.46594 * 96.08210 * 1 2 3 31 31 H 1.08998 * 109.46914 * 216.07994 * 1 2 3 32 32 H 1.08998 * 109.47021 * 336.08450 * 1 2 3 33 33 H 1.08003 * 119.99676 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.99963 * 179.72248 * 4 3 2 35 35 H 1.08003 * 119.99195 * 180.27222 * 5 4 3 36 36 H 1.08003 * 119.99833 * 179.83569 * 6 5 4 37 37 H 0.96997 * 117.63962 * 184.34210 * 12 10 8 38 38 H 1.09002 * 109.21551 * 217.71066 * 13 12 10 39 39 H 1.09002 * 109.21911 * 98.37699 * 13 12 10 40 40 H 1.09000 * 109.72082 * 287.05914 * 14 13 12 41 41 H 1.08995 * 109.71918 * 166.39654 * 14 13 12 42 42 H 1.09000 * 109.47277 * 300.00495 * 18 16 15 43 43 H 1.09002 * 109.46885 * 60.00201 * 18 16 15 44 44 H 1.08994 * 109.47639 * 299.99980 * 19 18 16 45 45 H 1.09002 * 109.47007 * 60.00376 * 19 18 16 46 46 H 1.09000 * 109.47384 * 300.00630 * 20 19 18 47 47 H 1.09002 * 109.46828 * 60.00367 * 20 19 18 48 48 H 1.09000 * 109.47317 * 299.99782 * 21 20 19 49 49 H 1.09002 * 109.47007 * 60.00476 * 21 20 19 50 50 H 0.97002 * 119.99608 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0053 5 6 4.2717 -0.0001 -0.0004 6 6 3.5806 -1.1970 0.0005 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5020 0.0017 9 1 0.3771 -2.3074 -0.1025 10 6 1.9150 -3.3565 -1.1436 11 8 1.5840 -3.0488 -2.2691 12 7 2.6813 -4.4379 -0.9741 13 6 3.0782 -4.9771 0.3194 14 6 2.9880 -3.9036 1.4056 15 7 1.6944 -3.2140 1.2639 16 6 0.7772 -3.2341 2.2511 17 8 -0.2802 -2.6577 2.1082 18 6 1.0654 -3.9729 3.5326 19 6 -0.1297 -3.8390 4.4784 20 6 0.1627 -4.5897 5.7792 21 6 -1.0327 -4.4563 6.7247 22 6 -0.7449 -5.1962 8.0057 23 1 0.1966 -5.7097 8.1328 24 6 -1.6831 -5.2166 9.0158 25 7 -1.4322 -5.8626 10.1335 26 14 -3.3113 -4.3276 8.7961 27 1 -4.3036 -5.2537 8.1935 28 1 -3.8050 -3.8651 10.1181 29 1 -3.1198 -3.1574 7.9022 30 1 -0.3632 -0.1089 -1.0219 31 1 -0.3633 -0.8305 0.6052 32 1 -0.3633 0.9394 0.4166 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1326 -0.0098 35 1 5.3518 0.0000 -0.0001 36 1 4.1206 -2.1323 0.0016 37 1 2.9943 -4.8968 -1.7693 38 1 4.1045 -5.3393 0.2574 39 1 2.4208 -5.8068 0.5793 40 1 3.8014 -3.1882 1.2842 41 1 3.0506 -4.3693 2.3891 42 1 1.2396 -5.0264 3.3134 43 1 1.9515 -3.5488 4.0050 44 1 -0.3034 -2.7856 4.6976 45 1 -1.0160 -4.2629 4.0061 46 1 0.3362 -5.6431 5.5597 47 1 1.0491 -4.1662 6.2516 48 1 -1.2065 -3.4029 6.9443 49 1 -1.9188 -4.8800 6.2521 50 1 -2.0925 -5.8773 10.8439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588679321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:43 Heat of formation + Delta-G solvation = -78.213336 kcal Electronic energy + Delta-G solvation = -30373.504632 eV Core-core repulsion = 26364.003657 eV Total energy + Delta-G solvation = -4009.500975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.34842 -40.35492 -39.99179 -37.73842 -36.68286 -35.40918 -34.64716 -33.97330 -32.93823 -31.66798 -30.51804 -28.68626 -27.81652 -26.91433 -25.20629 -23.85161 -23.16786 -22.30983 -21.76568 -21.06270 -19.76809 -18.88939 -18.64005 -18.30104 -17.65169 -17.36389 -16.95855 -16.73827 -16.47560 -16.30493 -16.06013 -15.73211 -15.50781 -15.10489 -14.73901 -14.65471 -14.55414 -14.21177 -14.07084 -13.81889 -13.74992 -13.67082 -13.37934 -13.34280 -13.15197 -12.94628 -12.85374 -12.68853 -12.29215 -12.11327 -12.06615 -11.94706 -11.74750 -11.54670 -11.45967 -11.31646 -11.23938 -10.84168 -10.74730 -10.24724 -9.85531 -9.82463 -9.61236 -8.28625 -6.31008 0.19787 0.38635 1.31272 1.35013 1.36784 1.49071 1.54991 1.69798 2.09652 2.36459 2.77320 3.07203 3.33143 3.50799 3.56062 3.77293 3.82644 3.94154 3.98614 4.05374 4.06741 4.16509 4.21488 4.36622 4.38512 4.56014 4.57840 4.66406 4.67044 4.67877 4.73284 4.76707 4.82173 4.86345 4.93195 5.02513 5.11419 5.15804 5.21339 5.24960 5.30971 5.42147 5.51814 5.58663 5.63105 5.68630 5.70297 5.71168 5.99791 6.07030 6.21650 6.31300 6.77326 6.96075 7.06890 7.33944 8.87845 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.002397 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.452424 B =11676.602779 C =12417.420854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.131 4.131 4 C -0.111 4.111 5 C -0.128 4.128 6 C -0.110 4.110 7 C -0.111 4.111 8 C 0.170 3.830 9 H 0.110 0.890 10 C 0.524 3.476 11 O -0.583 6.583 12 N -0.704 5.704 13 C 0.089 3.911 14 C 0.069 3.931 15 N -0.609 5.609 16 C 0.518 3.482 17 O -0.572 6.572 18 C -0.126 4.126 19 C -0.098 4.098 20 C -0.092 4.092 21 C -0.018 4.018 22 C -0.527 4.527 23 H 0.040 0.960 24 C 0.005 3.995 25 N -0.950 5.950 26 Si 0.944 3.056 27 H -0.268 1.268 28 H -0.283 1.283 29 H -0.253 1.253 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.410 0.590 38 H 0.138 0.862 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.140 0.860 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.011 0.989 49 H 0.011 0.989 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.494 8.261 -25.858 32.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.129 4.129 5 C -0.146 4.146 6 C -0.128 4.128 7 C -0.113 4.113 8 C 0.063 3.937 9 H 0.127 0.873 10 C 0.309 3.691 11 O -0.463 6.463 12 N -0.355 5.355 13 C -0.034 4.034 14 C -0.052 4.052 15 N -0.344 5.344 16 C 0.309 3.691 17 O -0.451 6.451 18 C -0.165 4.165 19 C -0.136 4.136 20 C -0.129 4.129 21 C -0.055 4.055 22 C -0.565 4.565 23 H 0.058 0.942 24 C -0.192 4.192 25 N -0.591 5.591 26 Si 0.768 3.232 27 H -0.193 1.193 28 H -0.209 1.209 29 H -0.177 1.177 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.247 0.753 38 H 0.155 0.845 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.157 0.843 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.030 0.970 49 H 0.029 0.971 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.608 8.744 -26.113 32.158 hybrid contribution -1.086 0.042 0.112 1.093 sum 15.522 8.787 -26.001 31.530 Atomic orbital electron populations 1.20954 0.91381 1.03617 1.02422 1.20003 0.96468 0.93258 0.98368 1.21322 0.95240 0.97375 1.00985 1.21564 0.93918 0.99543 0.97877 1.21468 1.01366 0.91800 0.99959 1.21300 0.92463 0.99779 0.99259 1.19548 0.94633 0.92573 1.04556 1.19988 1.01681 0.89582 0.82472 0.87257 1.20071 0.78016 0.81577 0.89427 1.90764 1.58027 1.71685 1.25832 1.45384 1.50546 1.27909 1.11709 1.22147 1.04516 0.96065 0.80701 1.22747 0.84326 0.95544 1.02586 1.48427 1.18626 1.52657 1.14644 1.21398 0.82555 0.79749 0.85421 1.90674 1.26660 1.46552 1.81166 1.21740 1.01094 1.02838 0.90845 1.21292 0.97448 1.00196 0.94680 1.21321 0.97965 0.99882 0.93748 1.19583 0.96171 0.95669 0.94119 1.21552 1.02699 1.32114 1.00176 0.94165 1.25957 1.02471 0.95990 0.94782 1.70055 1.37155 1.44847 1.07093 0.85744 0.79606 0.80078 0.77756 1.19329 1.20874 1.17691 0.91007 0.91695 0.90363 0.84421 0.83312 0.83010 0.84172 0.75265 0.84468 0.89809 0.88360 0.84256 0.85656 0.86083 0.93295 0.93052 0.92049 0.92234 0.97033 0.97077 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.13 71.24 0.65 -2.32 16 2 C -0.08 -1.83 5.88 -19.86 -0.12 -1.95 16 3 C -0.13 -2.42 9.68 22.27 0.22 -2.21 16 4 C -0.11 -1.64 10.05 22.27 0.22 -1.42 16 5 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 6 C -0.11 -1.79 8.23 22.27 0.18 -1.60 16 7 C -0.11 -2.41 5.02 -19.87 -0.10 -2.51 16 8 C 0.17 3.82 2.48 43.31 0.11 3.93 16 9 H 0.11 3.12 4.91 -2.38 -0.01 3.11 16 10 C 0.52 11.32 6.49 87.75 0.57 11.89 16 11 O -0.58 -17.55 17.81 -3.03 -0.05 -17.60 16 12 N -0.70 -8.29 5.43 -466.76 -2.53 -10.82 16 13 C 0.09 0.38 7.34 86.54 0.63 1.02 16 14 C 0.07 0.51 6.01 86.23 0.52 1.03 16 15 N -0.61 -10.91 2.61 -803.40 -2.10 -13.00 16 16 C 0.52 12.39 7.72 87.66 0.68 13.07 16 17 O -0.57 -19.02 14.19 -3.01 -0.04 -19.07 16 18 C -0.13 -2.48 4.07 29.85 0.12 -2.36 16 19 C -0.10 -2.96 4.50 30.60 0.14 -2.82 16 20 C -0.09 -3.28 5.15 30.60 0.16 -3.13 16 21 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 22 C -0.53 -30.36 9.66 25.60 0.25 -30.11 16 23 H 0.04 2.49 7.99 -2.91 -0.02 2.46 16 24 C 0.00 0.28 5.47 84.66 0.46 0.74 16 25 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 26 Si 0.94 45.56 27.47 68.60 1.88 47.44 16 27 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 28 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 29 H -0.25 -11.64 6.54 99.48 0.65 -10.99 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.82 5.15 -2.39 -0.01 1.81 16 32 H 0.08 1.58 8.04 -2.39 -0.02 1.56 16 33 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.14 1.57 5.74 -2.91 -0.02 1.55 16 37 H 0.41 3.72 8.80 -92.71 -0.82 2.91 16 38 H 0.14 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.10 0.54 5.23 -2.39 -0.01 0.53 16 41 H 0.14 0.36 6.03 -2.39 -0.01 0.35 16 42 H 0.13 1.72 7.87 -2.39 -0.02 1.70 16 43 H 0.12 1.79 7.83 -2.39 -0.02 1.77 16 44 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 45 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.01 0.54 7.20 -2.39 -0.02 0.53 16 49 H 0.01 0.51 7.57 -2.39 -0.02 0.50 16 50 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -84.62 394.95 2.58 -82.04 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.09 Total: 11.57 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 5.03 Total: -21.03 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -4.33 Total: -83.35 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.10 Total: -36.67 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -84.62 2.58 -82.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588679321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.827 kcal (2) G-P(sol) polarization free energy of solvation -84.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds