Wall clock time and date at job start Wed Apr 1 2020 04:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38241 * 119.99833 * 2 1 4 4 C 1.38235 * 119.99649 * 179.97438 * 3 2 1 5 5 C 1.38240 * 120.00200 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99796 * 179.97438 * 5 4 3 7 7 H 1.09002 * 110.54096 * 358.60693 * 6 5 4 8 8 C 1.54221 * 110.60575 * 235.58794 * 6 5 4 9 9 C 1.51313 * 103.55380 * 241.26159 * 8 6 5 10 10 O 1.21231 * 125.39668 * 180.24819 * 9 8 6 11 11 N 1.33879 * 109.20902 * 0.38894 * 9 8 6 12 12 C 1.46494 * 122.76339 * 179.84354 * 11 9 8 13 13 N 1.46901 * 109.47338 * 269.70574 * 12 11 9 14 14 C 1.46895 * 111.00048 * 154.99846 * 13 12 11 15 15 C 1.50696 * 109.47255 * 284.08326 * 14 13 12 16 16 H 1.07993 * 120.00464 * 4.69793 * 15 14 13 17 17 C 1.37885 * 119.99924 * 184.69231 * 15 14 13 18 18 N 1.31516 * 119.99762 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00082 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47384 * 59.99888 * 19 17 15 21 21 H 1.48497 * 109.47500 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47180 * 300.00185 * 19 17 15 23 23 C 1.46893 * 110.99871 * 278.95733 * 13 12 11 24 24 C 1.53009 * 109.47225 * 169.22705 * 23 13 12 25 25 C 1.52997 * 109.47435 * 289.22647 * 23 13 12 26 26 C 1.33870 * 114.47102 * 359.57143 * 11 9 8 27 27 O 1.21225 * 125.39655 * 180.29262 * 26 11 9 28 28 C 1.38229 * 119.99894 * 0.25097 * 5 4 3 29 29 C 1.38236 * 119.99967 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46916 * 90.00044 * 1 2 3 31 31 H 1.08998 * 109.47340 * 210.00023 * 1 2 3 32 32 H 1.09002 * 109.47535 * 330.00068 * 1 2 3 33 33 H 1.07996 * 119.99807 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.99623 * 179.97438 * 4 3 2 35 35 H 1.09003 * 110.60857 * 0.02562 * 8 6 5 36 36 H 1.08994 * 110.60955 * 122.96587 * 8 6 5 37 37 H 1.09005 * 109.47414 * 29.70808 * 12 11 9 38 38 H 1.08994 * 109.47051 * 149.70452 * 12 11 9 39 39 H 1.08997 * 109.47375 * 44.08903 * 14 13 12 40 40 H 1.09004 * 109.46910 * 164.08323 * 14 13 12 41 41 H 0.97000 * 119.99387 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.47534 * 49.23002 * 23 13 12 43 43 H 1.09002 * 109.46575 * 60.05971 * 24 23 13 44 44 H 1.08996 * 109.47267 * 180.02562 * 24 23 13 45 45 H 1.08995 * 109.46943 * 300.06753 * 24 23 13 46 46 H 1.09003 * 109.46725 * 60.00112 * 25 23 13 47 47 H 1.08996 * 109.47693 * 179.97438 * 25 23 13 48 48 H 1.09003 * 109.47050 * 300.00652 * 25 23 13 49 49 H 1.07995 * 120.00074 * 179.72996 * 28 5 4 50 50 H 1.07999 * 119.99983 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 1 6.1611 1.0205 -0.0243 8 6 6.3215 -0.8157 -1.1904 9 6 7.1084 -1.9267 -0.5299 10 8 7.7109 -2.8026 -1.1125 11 7 7.0312 -1.7909 0.7997 12 6 7.6858 -2.7137 1.7302 13 7 6.7656 -3.8098 2.0616 14 6 7.5042 -5.0117 2.4710 15 6 8.0900 -5.6802 1.2541 16 1 7.9946 -5.2152 0.2840 17 6 8.7479 -6.8855 1.3791 18 7 8.8637 -7.4519 2.5604 19 14 9.4746 -7.7138 -0.1292 20 1 10.4833 -6.8171 -0.7487 21 1 10.1246 -8.9877 0.2705 22 1 8.3942 -7.9947 -1.1085 23 6 5.8106 -3.3996 3.0996 24 6 4.7113 -4.4562 3.2275 25 6 6.5402 -3.2585 4.4370 26 6 6.3112 -0.7390 1.2088 27 8 6.1170 -0.4276 2.3642 28 6 3.5805 -1.1971 -0.0052 29 6 2.1981 -1.1972 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6581 2.1325 0.0004 34 1 4.1204 2.1325 0.0001 35 1 5.5015 -1.2213 -1.7831 36 1 6.9761 -0.2021 -1.8092 37 1 8.5841 -3.1212 1.2662 38 1 7.9576 -2.1797 2.6406 39 1 8.3068 -4.7304 3.1528 40 1 6.8259 -5.7015 2.9733 41 1 9.3268 -8.2997 2.6484 42 1 5.3651 -2.4431 2.8261 43 1 5.1566 -5.4124 3.5021 44 1 4.0024 -4.1516 3.9974 45 1 4.1922 -4.5575 2.2745 46 1 7.3234 -2.5058 4.3459 47 1 5.8317 -2.9537 5.2071 48 1 6.9857 -4.2150 4.7105 49 1 4.1205 -2.1324 -0.0097 50 1 1.6581 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902077011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:32 Heat of formation + Delta-G solvation = -33.584155 kcal Electronic energy + Delta-G solvation = -31615.907995 eV Core-core repulsion = 27608.342287 eV Total energy + Delta-G solvation = -4007.565709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89501 -39.45056 -38.28165 -37.57857 -35.66402 -34.29164 -32.75199 -31.85085 -31.07322 -30.37158 -27.70764 -27.04343 -26.46490 -25.34885 -24.42530 -23.02856 -22.46481 -22.13216 -20.89672 -19.55255 -18.52878 -17.29857 -17.01080 -16.57706 -16.24170 -15.66302 -15.40333 -15.14483 -14.82337 -14.68014 -14.52451 -14.11846 -13.92814 -13.79623 -13.65882 -13.59607 -13.46539 -13.16637 -13.00837 -12.52065 -12.39056 -12.30513 -12.10747 -11.87034 -11.82060 -11.68949 -11.24783 -11.16265 -11.10355 -11.02850 -10.84979 -10.62991 -10.52501 -10.36040 -10.24986 -9.84007 -9.70714 -9.40234 -9.12421 -9.06583 -8.66907 -8.37767 -7.38739 -5.98411 -3.98823 1.06948 1.25827 1.74111 2.75072 3.00748 3.40145 3.42275 3.48658 3.52005 4.15774 4.24759 4.34244 4.46659 4.51425 4.66006 4.74772 4.86527 4.88623 4.97768 5.16134 5.29834 5.35797 5.37305 5.40940 5.45412 5.51800 5.57400 5.58684 5.60132 5.69313 5.83583 5.88905 5.91594 5.98884 6.07599 6.16192 6.23676 6.32945 6.37661 6.38752 6.43602 6.47044 6.77749 6.81587 6.82788 7.06080 7.24176 7.30535 7.56796 7.88037 7.99584 8.07974 8.18841 8.52776 9.11931 9.65863 11.11858 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.003443 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.717828 B = 8129.444250 C = 8532.884440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.099 4.099 5 C -0.077 4.077 6 C -0.085 4.085 7 H 0.126 0.874 8 C -0.153 4.153 9 C 0.526 3.474 10 O -0.459 6.459 11 N -0.560 5.560 12 C 0.267 3.733 13 N -0.538 5.538 14 C 0.198 3.802 15 C -0.507 4.507 16 H 0.069 0.931 17 C 0.057 3.943 18 N -0.901 5.901 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.071 3.929 24 C -0.138 4.138 25 C -0.178 4.178 26 C 0.534 3.466 27 O -0.479 6.479 28 C -0.101 4.101 29 C -0.113 4.113 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.063 0.937 39 H -0.007 1.007 40 H 0.044 0.956 41 H 0.261 0.739 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.049 0.951 48 H 0.064 0.936 49 H 0.125 0.875 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.898 18.946 -5.194 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.117 4.117 5 C -0.077 4.077 6 C -0.106 4.106 7 H 0.144 0.856 8 C -0.193 4.193 9 C 0.313 3.687 10 O -0.328 6.328 11 N -0.303 5.303 12 C 0.057 3.943 13 N -0.263 5.263 14 C 0.073 3.927 15 C -0.546 4.546 16 H 0.087 0.913 17 C -0.144 4.144 18 N -0.541 5.541 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.038 4.038 24 C -0.195 4.195 25 C -0.237 4.237 26 C 0.321 3.679 27 O -0.350 6.350 28 C -0.119 4.119 29 C -0.131 4.131 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.011 0.989 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.143 0.857 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.823 18.289 -5.194 22.932 hybrid contribution 0.910 -0.409 0.070 1.000 sum -11.913 17.880 -5.123 22.088 Atomic orbital electron populations 1.20802 0.91219 1.02855 1.02297 1.19971 0.96124 0.93230 0.99154 1.20973 0.93948 0.97529 1.01508 1.20966 0.94204 0.97087 0.99448 1.19150 0.92083 0.93928 1.02573 1.21000 0.94000 1.02040 0.93564 0.85570 1.22662 1.01923 0.96561 0.98112 1.20610 0.80295 0.85757 0.82071 1.90837 1.40072 1.34283 1.67599 1.46964 1.47237 1.26390 1.09726 1.22227 0.93276 0.87284 0.91526 1.62036 1.18510 1.05154 1.40650 1.19749 0.91989 0.84914 0.96005 1.21255 1.33766 1.05001 0.94588 0.91319 1.24948 0.96402 0.97113 0.95948 1.69950 1.43376 1.18205 1.22552 0.86565 0.79400 0.78382 0.83114 1.20229 1.21566 1.20223 1.21766 0.93828 0.98269 0.89922 1.21791 0.97431 0.99518 1.00768 1.22394 1.00668 1.02045 0.98582 1.20480 0.76729 0.80440 0.90205 1.90734 1.56158 1.68268 1.19879 1.21110 0.94584 0.97721 0.98513 1.21026 0.93898 0.97752 1.00468 0.91152 0.91434 0.91583 0.85979 0.85759 0.86214 0.86303 0.86898 0.91940 0.98882 0.93804 0.92974 0.90972 0.91740 0.93546 0.92674 0.93275 0.93187 0.91714 0.85708 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.08 -0.80 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 4 C -0.10 -0.92 9.68 -39.58 -0.38 -1.30 16 5 C -0.08 -0.83 4.81 -104.62 -0.50 -1.33 16 6 C -0.08 -0.88 3.32 -91.98 -0.31 -1.19 16 7 H 0.13 0.95 7.94 -51.93 -0.41 0.54 16 8 C -0.15 -1.56 6.38 -26.94 -0.17 -1.73 16 9 C 0.53 8.31 8.08 -11.08 -0.09 8.22 16 10 O -0.46 -9.26 17.47 5.60 0.10 -9.17 16 11 N -0.56 -9.20 2.77 -118.62 -0.33 -9.53 16 12 C 0.27 5.23 5.08 -63.32 -0.32 4.91 16 13 N -0.54 -11.49 4.46 -231.98 -1.04 -12.53 16 14 C 0.20 5.02 3.27 -4.98 -0.02 5.00 16 15 C -0.51 -14.32 8.53 -34.44 -0.29 -14.61 16 16 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 19 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.07 1.34 2.87 -67.71 -0.19 1.15 16 24 C -0.14 -2.47 9.18 37.16 0.34 -2.13 16 25 C -0.18 -3.23 8.54 37.16 0.32 -2.91 16 26 C 0.53 7.83 6.30 -11.09 -0.07 7.76 16 27 O -0.48 -8.22 15.77 5.61 0.09 -8.13 16 28 C -0.10 -1.21 8.51 -39.58 -0.34 -1.54 16 29 C -0.11 -1.22 9.70 -39.58 -0.38 -1.60 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.86 7.98 -52.49 -0.42 0.45 16 35 H 0.12 1.14 7.26 -51.93 -0.38 0.76 16 36 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.11 2.45 6.94 -51.93 -0.36 2.09 16 38 H 0.06 1.19 5.84 -51.93 -0.30 0.88 16 39 H -0.01 -0.18 7.33 -51.93 -0.38 -0.56 16 40 H 0.04 1.19 5.88 -51.93 -0.31 0.88 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 1.36 5.35 -51.93 -0.28 1.09 16 43 H 0.06 1.27 6.28 -51.93 -0.33 0.95 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.05 0.89 6.47 -51.93 -0.34 0.55 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.06 1.27 6.74 -51.93 -0.35 0.92 16 49 H 0.12 1.67 7.98 -52.49 -0.42 1.25 16 50 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -33.21 401.03 -10.18 -43.38 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.61 Total: 1.61 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.15 Total: -3.09 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.63 Total: -48.02 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.19 Total: -17.30 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.21 -10.18 -43.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902077011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.799 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds