Wall clock time and date at job start Wed Apr 1 2020 04:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38241 * 119.99833 * 2 1 4 4 C 1.38235 * 119.99649 * 179.97438 * 3 2 1 5 5 C 1.38240 * 120.00200 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99796 * 179.97438 * 5 4 3 7 7 H 1.09002 * 110.54096 * 358.60693 * 6 5 4 8 8 C 1.54221 * 110.60575 * 235.58794 * 6 5 4 9 9 C 1.51313 * 103.55380 * 241.26159 * 8 6 5 10 10 O 1.21231 * 125.39668 * 180.24819 * 9 8 6 11 11 N 1.33879 * 109.20902 * 0.38894 * 9 8 6 12 12 C 1.46494 * 122.76339 * 179.84354 * 11 9 8 13 13 N 1.46901 * 109.47338 * 269.70574 * 12 11 9 14 14 C 1.46895 * 111.00048 * 154.99846 * 13 12 11 15 15 C 1.50696 * 109.47255 * 284.08326 * 14 13 12 16 16 H 1.07993 * 120.00464 * 4.69793 * 15 14 13 17 17 C 1.37885 * 119.99924 * 184.69231 * 15 14 13 18 18 N 1.31516 * 119.99762 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00082 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47384 * 59.99888 * 19 17 15 21 21 H 1.48497 * 109.47500 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47180 * 300.00185 * 19 17 15 23 23 C 1.46893 * 110.99871 * 278.95733 * 13 12 11 24 24 C 1.53009 * 109.47225 * 169.22705 * 23 13 12 25 25 C 1.52997 * 109.47435 * 289.22647 * 23 13 12 26 26 C 1.33870 * 114.47102 * 359.57143 * 11 9 8 27 27 O 1.21225 * 125.39655 * 180.29262 * 26 11 9 28 28 C 1.38229 * 119.99894 * 0.25097 * 5 4 3 29 29 C 1.38236 * 119.99967 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46916 * 90.00044 * 1 2 3 31 31 H 1.08998 * 109.47340 * 210.00023 * 1 2 3 32 32 H 1.09002 * 109.47535 * 330.00068 * 1 2 3 33 33 H 1.07996 * 119.99807 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.99623 * 179.97438 * 4 3 2 35 35 H 1.09003 * 110.60857 * 0.02562 * 8 6 5 36 36 H 1.08994 * 110.60955 * 122.96587 * 8 6 5 37 37 H 1.09005 * 109.47414 * 29.70808 * 12 11 9 38 38 H 1.08994 * 109.47051 * 149.70452 * 12 11 9 39 39 H 1.08997 * 109.47375 * 44.08903 * 14 13 12 40 40 H 1.09004 * 109.46910 * 164.08323 * 14 13 12 41 41 H 0.97000 * 119.99387 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.47534 * 49.23002 * 23 13 12 43 43 H 1.09002 * 109.46575 * 60.05971 * 24 23 13 44 44 H 1.08996 * 109.47267 * 180.02562 * 24 23 13 45 45 H 1.08995 * 109.46943 * 300.06753 * 24 23 13 46 46 H 1.09003 * 109.46725 * 60.00112 * 25 23 13 47 47 H 1.08996 * 109.47693 * 179.97438 * 25 23 13 48 48 H 1.09003 * 109.47050 * 300.00652 * 25 23 13 49 49 H 1.07995 * 120.00074 * 179.72996 * 28 5 4 50 50 H 1.07999 * 119.99983 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 1 6.1611 1.0205 -0.0243 8 6 6.3215 -0.8157 -1.1904 9 6 7.1084 -1.9267 -0.5299 10 8 7.7109 -2.8026 -1.1125 11 7 7.0312 -1.7909 0.7997 12 6 7.6858 -2.7137 1.7302 13 7 6.7656 -3.8098 2.0616 14 6 7.5042 -5.0117 2.4710 15 6 8.0900 -5.6802 1.2541 16 1 7.9946 -5.2152 0.2840 17 6 8.7479 -6.8855 1.3791 18 7 8.8637 -7.4519 2.5604 19 14 9.4746 -7.7138 -0.1292 20 1 10.4833 -6.8171 -0.7487 21 1 10.1246 -8.9877 0.2705 22 1 8.3942 -7.9947 -1.1085 23 6 5.8106 -3.3996 3.0996 24 6 4.7113 -4.4562 3.2275 25 6 6.5402 -3.2585 4.4370 26 6 6.3112 -0.7390 1.2088 27 8 6.1170 -0.4276 2.3642 28 6 3.5805 -1.1971 -0.0052 29 6 2.1981 -1.1972 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6581 2.1325 0.0004 34 1 4.1204 2.1325 0.0001 35 1 5.5015 -1.2213 -1.7831 36 1 6.9761 -0.2021 -1.8092 37 1 8.5841 -3.1212 1.2662 38 1 7.9576 -2.1797 2.6406 39 1 8.3068 -4.7304 3.1528 40 1 6.8259 -5.7015 2.9733 41 1 9.3268 -8.2997 2.6484 42 1 5.3651 -2.4431 2.8261 43 1 5.1566 -5.4124 3.5021 44 1 4.0024 -4.1516 3.9974 45 1 4.1922 -4.5575 2.2745 46 1 7.3234 -2.5058 4.3459 47 1 5.8317 -2.9537 5.2071 48 1 6.9857 -4.2150 4.7105 49 1 4.1205 -2.1324 -0.0097 50 1 1.6581 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902077011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:31 Heat of formation + Delta-G solvation = -53.514600 kcal Electronic energy + Delta-G solvation = -31616.772244 eV Core-core repulsion = 27608.342287 eV Total energy + Delta-G solvation = -4008.429958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.08775 -40.28207 -39.62054 -39.16958 -36.90887 -35.33002 -34.90181 -32.94081 -31.87414 -31.77887 -29.19311 -28.23961 -28.08122 -26.54978 -25.83593 -24.38240 -23.78482 -23.19275 -21.79475 -20.85728 -20.06580 -18.81646 -18.33712 -18.10408 -17.52247 -16.91714 -16.56084 -16.46067 -16.11617 -15.96214 -15.85651 -15.69349 -15.11733 -15.02156 -14.79918 -14.55686 -14.36926 -14.28632 -14.17914 -14.12857 -13.86970 -13.56568 -13.28230 -13.01578 -12.97263 -12.88190 -12.83129 -12.64104 -12.60565 -12.39833 -12.23055 -12.19493 -11.95358 -11.81427 -11.62534 -11.53525 -11.38726 -11.00318 -10.83286 -10.59193 -9.80611 -9.42247 -9.17416 -8.21050 -6.28923 0.29691 0.50616 0.56157 1.36605 1.39083 1.47386 1.50238 1.80873 2.38809 2.73502 3.07220 3.14878 3.23087 3.26701 3.49492 3.68487 3.88350 3.95967 3.99213 4.09544 4.13807 4.15293 4.27673 4.31595 4.35568 4.51840 4.53696 4.56991 4.67140 4.71077 4.78193 4.79394 4.81927 4.87656 4.89261 4.93148 4.97568 5.05004 5.19307 5.21882 5.27918 5.30604 5.31833 5.51512 5.61705 5.67050 5.73653 5.88312 6.05475 6.11964 6.19973 6.38558 6.53369 6.77623 6.89426 7.39704 8.88627 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.003443 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.717828 B = 8129.444250 C = 8532.884440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.094 4.094 5 C -0.089 4.089 6 C -0.067 4.067 7 H 0.170 0.830 8 C -0.133 4.133 9 C 0.519 3.481 10 O -0.514 6.514 11 N -0.566 5.566 12 C 0.273 3.727 13 N -0.545 5.545 14 C 0.220 3.780 15 C -0.521 4.521 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.929 5.929 19 Si 0.959 3.041 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.274 1.274 23 C 0.072 3.928 24 C -0.131 4.131 25 C -0.169 4.169 26 C 0.531 3.469 27 O -0.505 6.505 28 C -0.121 4.121 29 C -0.131 4.131 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.161 0.839 37 H 0.083 0.917 38 H 0.066 0.934 39 H -0.029 1.029 40 H 0.024 0.976 41 H 0.264 0.736 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.098 0.902 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.548 22.049 -6.457 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.112 4.112 5 C -0.089 4.089 6 C -0.088 4.088 7 H 0.187 0.813 8 C -0.172 4.172 9 C 0.309 3.691 10 O -0.386 6.386 11 N -0.309 5.309 12 C 0.062 3.938 13 N -0.271 5.271 14 C 0.094 3.906 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.570 5.570 19 Si 0.784 3.216 20 H -0.200 1.200 21 H -0.203 1.203 22 H -0.199 1.199 23 C -0.036 4.036 24 C -0.189 4.189 25 C -0.228 4.228 26 C 0.321 3.679 27 O -0.378 6.378 28 C -0.139 4.139 29 C -0.149 4.149 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.148 0.852 36 H 0.179 0.821 37 H 0.101 0.899 38 H 0.084 0.916 39 H -0.011 1.011 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.116 0.884 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.502 21.433 -6.461 26.672 hybrid contribution 1.335 -1.311 0.515 1.941 sum -13.167 20.122 -5.946 24.771 Atomic orbital electron populations 1.20853 0.89574 1.03518 1.03178 1.20295 0.97470 0.92964 0.98090 1.21364 0.94158 0.98314 1.00311 1.21317 0.94564 0.97478 0.97826 1.19189 0.91971 0.94128 1.03657 1.21076 0.93890 1.03317 0.90475 0.81276 1.22743 1.01824 0.94522 0.98109 1.21643 0.79482 0.86211 0.81734 1.90805 1.42602 1.36868 1.68374 1.47065 1.47585 1.26408 1.09846 1.21871 0.92525 0.87305 0.92109 1.61942 1.18625 1.04812 1.41673 1.19290 0.90893 0.86089 0.94303 1.21447 1.34232 1.05484 0.94757 0.92835 1.25716 0.96688 0.97686 0.98752 1.70048 1.43995 1.18628 1.24287 0.85604 0.78655 0.77678 0.79666 1.19954 1.20274 1.19927 1.21826 0.93480 0.98660 0.89652 1.21739 0.97476 0.98075 1.01566 1.22293 1.00948 1.00810 0.98753 1.21272 0.75641 0.79725 0.91247 1.90712 1.56870 1.68791 1.21419 1.21032 0.95177 0.97384 1.00306 1.21151 0.93699 0.98699 1.01397 0.90079 0.91578 0.90157 0.83265 0.82709 0.85159 0.82113 0.89910 0.91602 1.01141 0.95807 0.92682 0.90361 0.94038 0.90515 0.93012 0.93550 0.90671 0.93831 0.88364 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.23 0.71 -0.58 16 2 C -0.09 -1.45 5.88 -19.87 -0.12 -1.56 16 3 C -0.12 -1.72 9.70 22.27 0.22 -1.50 16 4 C -0.09 -1.34 9.68 22.27 0.22 -1.13 16 5 C -0.09 -1.68 4.81 -19.87 -0.10 -1.77 16 6 C -0.07 -1.19 3.32 -11.68 -0.04 -1.22 16 7 H 0.17 1.63 7.94 -2.39 -0.02 1.61 16 8 C -0.13 -2.38 6.38 30.46 0.19 -2.19 16 9 C 0.52 16.53 8.08 87.99 0.71 17.24 16 10 O -0.51 -21.60 17.47 -2.88 -0.05 -21.65 16 11 N -0.57 -18.95 2.77 -767.04 -2.13 -21.07 16 12 C 0.27 11.30 5.08 170.81 0.87 12.16 16 13 N -0.54 -24.53 4.46 -887.84 -3.96 -28.49 16 14 C 0.22 11.85 3.27 85.56 0.28 12.13 16 15 C -0.52 -30.84 8.53 25.60 0.22 -30.62 16 16 H 0.05 3.29 7.81 -2.91 -0.02 3.27 16 17 C 0.01 0.59 5.46 84.66 0.46 1.05 16 18 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 19 Si 0.96 47.05 29.54 68.60 2.03 49.08 16 20 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 23 C 0.07 2.79 2.87 44.92 0.13 2.92 16 24 C -0.13 -4.80 9.18 71.99 0.66 -4.14 16 25 C -0.17 -6.26 8.54 71.98 0.61 -5.64 16 26 C 0.53 15.03 6.30 87.99 0.55 15.58 16 27 O -0.50 -16.84 15.77 -2.86 -0.05 -16.88 16 28 C -0.12 -2.79 8.51 22.27 0.19 -2.60 16 29 C -0.13 -2.71 9.70 22.27 0.22 -2.50 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 32 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 33 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.16 1.25 7.98 -2.91 -0.02 1.22 16 35 H 0.13 2.19 7.26 -2.39 -0.02 2.18 16 36 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 3.89 6.94 -2.38 -0.02 3.87 16 38 H 0.07 2.63 5.84 -2.39 -0.01 2.62 16 39 H -0.03 -1.67 7.33 -2.39 -0.02 -1.68 16 40 H 0.02 1.38 5.88 -2.38 -0.01 1.36 16 41 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 42 H 0.08 2.98 5.35 -2.39 -0.01 2.97 16 43 H 0.04 1.70 6.28 -2.39 -0.01 1.69 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.05 1.71 6.47 -2.39 -0.02 1.69 16 47 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.04 1.78 6.74 -2.39 -0.02 1.76 16 49 H 0.10 2.73 7.98 -2.91 -0.02 2.70 16 50 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -76.67 401.03 3.06 -73.62 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.94 Total: 16.15 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.99 Total: 5.63 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -5.80 Total: -105.95 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -0.10 Total: -38.53 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -76.67 3.06 -73.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902077011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.101 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds