Wall clock time and date at job start Wed Apr 1 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 116.99749 * 2 1 4 4 C 1.38751 * 120.05813 * 0.25725 * 3 2 1 5 5 C 1.38121 * 119.94154 * 180.32240 * 4 3 2 6 6 C 1.38288 * 120.05763 * 359.67352 * 5 4 3 7 7 C 1.50701 * 119.94448 * 180.02562 * 6 5 4 8 8 C 1.38238 * 120.11364 * 0.02856 * 6 5 4 9 9 C 1.38170 * 120.05377 * 0.02562 * 8 6 5 10 10 C 1.50698 * 120.02920 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.47353 * 265.00109 * 10 9 8 12 12 O 1.21280 * 119.99462 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99920 * 179.97438 * 11 10 9 14 14 C 1.47160 * 120.70904 * 180.02562 * 13 11 10 15 15 C 1.53885 * 108.03350 * 132.75124 * 14 13 11 16 16 H 1.08996 * 112.58269 * 182.21841 * 15 14 13 17 17 C 1.54541 * 107.83127 * 306.50926 * 15 14 13 18 18 C 1.54277 * 104.85212 * 89.06819 * 17 15 14 19 19 C 1.54548 * 104.84931 * 359.97438 * 18 17 15 20 20 H 1.08999 * 112.18269 * 146.40960 * 19 18 17 21 21 C 1.48434 * 120.83401 * 0.38083 * 13 11 10 22 22 N 1.48304 * 104.35540 * 24.70263 * 19 18 17 23 23 C 1.36937 * 128.07716 * 139.10596 * 22 19 18 24 24 H 1.07998 * 119.99847 * 344.86504 * 23 22 19 25 25 C 1.38811 * 120.00393 * 164.87293 * 23 22 19 26 26 N 1.31624 * 119.99508 * 350.25655 * 25 23 22 27 27 Si 1.86796 * 120.00389 * 170.25655 * 25 23 22 28 28 H 1.48502 * 109.47259 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47257 * 119.99623 * 27 25 23 30 30 H 1.48504 * 109.47258 * 239.99979 * 27 25 23 31 31 H 1.09001 * 109.47082 * 299.99243 * 1 2 3 32 32 H 1.08994 * 109.47321 * 59.99685 * 1 2 3 33 33 H 1.09001 * 109.47023 * 180.02562 * 1 2 3 34 34 H 1.07994 * 120.02776 * 0.02562 * 4 3 2 35 35 H 1.08003 * 119.97302 * 179.70467 * 5 4 3 36 36 H 1.08995 * 109.47350 * 269.98139 * 7 6 5 37 37 H 1.09000 * 109.47282 * 29.98104 * 7 6 5 38 38 H 1.09006 * 109.47028 * 149.98021 * 7 6 5 39 39 H 1.07995 * 119.97787 * 179.97438 * 8 6 5 40 40 H 1.08997 * 109.47200 * 144.99925 * 10 9 8 41 41 H 1.09005 * 109.47336 * 25.00213 * 10 9 8 42 42 H 1.09007 * 109.75066 * 13.11740 * 14 13 11 43 43 H 1.09003 * 109.74930 * 252.38932 * 14 13 11 44 44 H 1.09007 * 110.36288 * 207.91025 * 17 15 14 45 45 H 1.09002 * 110.36484 * 330.11698 * 17 15 14 46 46 H 1.09002 * 110.36762 * 241.15643 * 18 17 15 47 47 H 1.09000 * 110.36718 * 118.84003 * 18 17 15 48 48 H 1.09002 * 110.57293 * 107.75423 * 21 13 11 49 49 H 1.08993 * 109.56754 * 346.61486 * 21 13 11 50 50 H 0.97009 * 119.99596 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0054 5 6 1.9208 3.6047 -0.0014 6 6 3.3019 3.6757 -0.0067 7 6 3.9860 5.0185 -0.0134 8 6 4.0559 2.5172 -0.0058 9 6 3.4311 1.2848 -0.0002 10 6 4.2537 0.0222 0.0001 11 6 4.4190 -0.4702 -1.4146 12 8 3.9184 0.1442 -2.3327 13 7 5.1238 -1.5925 -1.6595 14 6 5.2955 -2.0870 -3.0349 15 6 6.7828 -2.4265 -3.2369 16 1 7.0009 -2.7656 -4.2495 17 6 7.6098 -1.1803 -2.8479 18 6 7.8797 -1.3405 -1.3374 19 6 7.1908 -2.6687 -0.9506 20 1 7.7300 -3.1986 -0.1654 21 6 5.7381 -2.3626 -0.5492 22 7 7.1428 -3.4403 -2.2162 23 6 7.3764 -4.7770 -2.3998 24 1 7.8631 -5.3514 -1.6254 25 6 6.9879 -5.3938 -3.5811 26 7 6.2290 -4.7487 -4.4415 27 14 7.5420 -7.1392 -3.9496 28 1 8.3817 -7.6386 -2.8312 29 1 6.3520 -8.0140 -4.1046 30 1 8.3332 -7.1525 -5.2062 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 0.2128 2.3203 0.0100 35 1 1.3339 4.5114 -0.0020 36 1 4.1475 5.3388 -1.0427 37 1 3.3597 5.7480 0.5001 38 1 4.9457 4.9399 0.4975 39 1 5.1343 2.5752 -0.0104 40 1 3.7489 -0.7402 0.5935 41 1 5.2340 0.2273 0.4303 42 1 4.9942 -1.3158 -3.7439 43 1 4.6901 -2.9812 -3.1831 44 1 8.5488 -1.1605 -3.4011 45 1 7.0388 -0.2715 -3.0386 46 1 7.4408 -0.5106 -0.7835 47 1 8.9515 -1.3994 -1.1478 48 1 5.1974 -3.2947 -0.3846 49 1 5.7260 -1.7634 0.3611 50 1 5.9571 -5.1799 -5.2669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029383589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:29 Heat of formation + Delta-G solvation = -11.779603 kcal Electronic energy + Delta-G solvation = -31477.675040 eV Core-core repulsion = 27471.054848 eV Total energy + Delta-G solvation = -4006.620192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.47961 -39.65467 -37.82496 -37.45408 -33.61305 -33.17988 -32.30741 -31.62573 -30.58251 -29.28020 -28.03059 -27.88489 -26.00608 -25.69874 -23.78689 -23.56221 -22.07761 -20.99271 -19.71930 -19.47103 -18.46024 -17.90412 -16.99626 -16.51806 -16.05188 -15.63610 -15.41900 -15.20293 -14.63202 -14.49405 -14.39020 -14.04427 -13.81986 -13.69825 -13.55891 -13.09499 -12.95363 -12.76140 -12.71018 -12.36100 -12.09030 -12.03947 -11.87770 -11.79921 -11.56903 -11.54517 -11.23257 -10.98652 -10.88828 -10.86823 -10.80489 -10.72652 -10.29874 -9.99330 -9.81827 -9.64579 -9.51199 -9.22551 -8.83810 -8.68065 -7.94921 -7.94689 -6.80934 -5.82517 -3.17834 1.33220 1.44961 3.27923 3.30531 3.36131 3.42385 3.44527 3.57931 3.90781 4.42709 4.66786 4.76171 4.84969 4.96849 5.07692 5.10276 5.20536 5.23766 5.28822 5.34090 5.35564 5.41858 5.54197 5.57487 5.61039 5.65572 5.71133 5.73933 5.78636 5.85299 5.87301 5.99793 6.08287 6.26667 6.30486 6.37181 6.41926 6.46357 6.56331 6.59913 6.69357 6.75807 6.81584 6.84740 6.92213 7.07170 7.36023 7.41549 7.53838 7.73498 8.15594 8.20801 8.87066 9.07142 9.69445 10.46459 11.30379 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018029 B = 0.002989 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.689767 B = 9365.961178 C =10167.904100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.311 6.311 3 C 0.139 3.861 4 C -0.206 4.206 5 C -0.085 4.085 6 C -0.126 4.126 7 C -0.107 4.107 8 C -0.070 4.070 9 C -0.084 4.084 10 C -0.093 4.093 11 C 0.513 3.487 12 O -0.553 6.553 13 N -0.595 5.595 14 C 0.114 3.886 15 C 0.169 3.831 16 H 0.116 0.884 17 C -0.136 4.136 18 C -0.121 4.121 19 C 0.133 3.867 20 H 0.077 0.923 21 C 0.096 3.904 22 N -0.585 5.585 23 C -0.226 4.226 24 H 0.077 0.923 25 C -0.003 4.003 26 N -0.911 5.911 27 Si 0.911 3.089 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.818 14.849 11.836 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C 0.093 3.907 4 C -0.225 4.225 5 C -0.103 4.103 6 C -0.126 4.126 7 C -0.163 4.163 8 C -0.088 4.088 9 C -0.085 4.085 10 C -0.133 4.133 11 C 0.301 3.699 12 O -0.432 6.432 13 N -0.328 5.328 14 C -0.009 4.009 15 C 0.061 3.939 16 H 0.134 0.866 17 C -0.175 4.175 18 C -0.160 4.160 19 C 0.024 3.976 20 H 0.095 0.905 21 C -0.029 4.029 22 N -0.306 5.306 23 C -0.355 4.355 24 H 0.094 0.906 25 C -0.201 4.201 26 N -0.557 5.557 27 Si 0.742 3.258 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.217 1.217 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.010 14.716 11.165 19.757 hybrid contribution -0.191 -0.895 -0.225 0.942 sum -7.201 13.821 10.940 19.041 Atomic orbital electron populations 1.23020 0.78711 1.03864 1.00978 1.86103 1.21060 1.26806 1.88408 1.18761 0.91693 0.84215 0.96014 1.21119 0.99710 0.92320 1.09352 1.20720 0.93894 0.96768 0.98951 1.19722 0.93607 0.95331 1.03986 1.20691 1.00110 0.93416 1.02126 1.20704 0.99571 0.90523 0.98016 1.18699 0.90280 0.94756 1.04759 1.20512 1.00525 0.95805 0.96458 1.20253 0.78530 0.80742 0.90407 1.90643 1.49061 1.57181 1.46287 1.48498 1.51059 1.24118 1.09108 1.22364 1.00081 0.98366 0.80090 1.21870 0.89619 0.85698 0.96672 0.86607 1.22631 0.99925 0.99406 0.95583 1.22448 0.99398 0.97273 0.96874 1.21937 0.92254 0.92048 0.91372 0.90526 1.22720 0.96788 0.95470 0.87912 1.45177 1.80693 1.04058 1.00665 1.19028 1.31651 0.82749 1.02023 0.90557 1.24846 0.98823 0.98101 0.98306 1.69871 1.37758 1.36886 1.11209 0.86071 0.77815 0.84039 0.77911 1.20498 1.21827 1.21708 0.92949 0.92743 0.88348 0.85701 0.86164 0.91486 0.91966 0.91744 0.85597 0.88217 0.88594 0.91524 0.90505 0.92955 0.92868 0.93080 0.92687 0.91457 0.91704 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.54 9.64 -19.42 -0.19 -4.73 16 3 C 0.14 2.03 6.66 -39.22 -0.26 1.77 16 4 C -0.21 -2.55 9.04 -39.43 -0.36 -2.91 16 5 C -0.09 -0.97 9.69 -39.61 -0.38 -1.36 16 6 C -0.13 -1.49 5.88 -104.60 -0.62 -2.11 16 7 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 8 C -0.07 -0.93 9.33 -39.61 -0.37 -1.29 16 9 C -0.08 -1.25 4.39 -104.47 -0.46 -1.70 16 10 C -0.09 -1.38 3.94 -29.03 -0.11 -1.49 16 11 C 0.51 9.77 7.70 -10.98 -0.08 9.69 16 12 O -0.55 -12.45 15.50 5.56 0.09 -12.36 16 13 N -0.60 -11.66 2.26 -170.55 -0.39 -12.05 16 14 C 0.11 2.59 5.81 -3.22 -0.02 2.57 16 15 C 0.17 3.89 3.12 -65.68 -0.20 3.68 16 16 H 0.12 3.03 6.39 -51.93 -0.33 2.70 16 17 C -0.14 -2.67 6.18 -25.25 -0.16 -2.83 16 18 C -0.12 -2.10 6.19 -25.25 -0.16 -2.25 16 19 C 0.13 2.52 4.27 -65.71 -0.28 2.24 16 20 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 21 C 0.10 1.68 5.91 -2.56 -0.02 1.67 16 22 N -0.58 -13.84 2.80 -152.68 -0.43 -14.27 16 23 C -0.23 -5.91 10.37 -15.06 -0.16 -6.07 16 24 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 25 C 0.00 -0.09 5.41 -17.43 -0.09 -0.19 16 26 N -0.91 -25.28 10.41 55.49 0.58 -24.70 16 27 Si 0.91 21.29 29.56 -169.99 -5.03 16.27 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 31 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 32 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 35 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 39 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.10 1.40 7.62 -51.93 -0.40 1.00 16 41 H 0.10 1.18 7.52 -51.93 -0.39 0.79 16 42 H 0.07 1.55 7.11 -51.93 -0.37 1.18 16 43 H 0.08 1.99 7.80 -51.93 -0.41 1.58 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16 46 H 0.05 0.79 7.86 -51.93 -0.41 0.38 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.06 0.90 6.13 -51.93 -0.32 0.58 16 50 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -31.82 392.39 -9.74 -41.57 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.92 Total: 4.24 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.37 Total: 0.14 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.24 Total: -51.03 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.10 Total: -17.09 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.82 -9.74 -41.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029383589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.786 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds