Wall clock time and date at job start Wed Apr 1 2020 04:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38259 * 119.99990 * 2 1 4 4 C 1.38215 * 120.00034 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99823 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00445 * 359.81239 * 5 4 3 7 7 C 1.38214 * 120.00323 * 180.02562 * 2 1 3 8 8 C 1.50706 * 119.99616 * 359.97438 * 7 2 1 9 9 H 1.08999 * 115.55790 * 334.30992 * 8 7 2 10 10 C 1.53074 * 117.49131 * 188.59567 * 8 7 2 11 11 C 1.52994 * 59.98565 * 252.51351 * 10 8 7 12 12 H 1.09006 * 117.49851 * 107.49664 * 11 10 8 13 13 C 1.50697 * 117.50491 * 252.50077 * 11 10 8 14 14 O 1.21283 * 120.00131 * 68.74453 * 13 11 10 15 15 N 1.34779 * 119.99988 * 248.75348 * 13 11 10 16 16 C 1.46496 * 120.00004 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47325 * 179.97438 * 16 15 13 18 18 H 1.09003 * 109.50831 * 305.09736 * 17 16 15 19 19 C 1.53295 * 109.51566 * 184.99830 * 17 16 15 20 20 N 1.47151 * 108.38601 * 187.77321 * 19 17 16 21 21 C 1.36940 * 120.98229 * 230.51105 * 20 19 17 22 22 H 1.07999 * 119.99867 * 153.77538 * 21 20 19 23 23 C 1.38814 * 119.99771 * 333.77552 * 21 20 19 24 24 N 1.31618 * 119.99983 * 343.08606 * 23 21 20 25 25 Si 1.86797 * 119.99768 * 163.09399 * 23 21 20 26 26 H 1.48503 * 109.46819 * 269.99643 * 25 23 21 27 27 H 1.48497 * 109.47286 * 29.99616 * 25 23 21 28 28 H 1.48502 * 109.47054 * 149.99887 * 25 23 21 29 29 C 1.47157 * 118.03587 * 50.78253 * 20 19 17 30 30 C 1.53704 * 108.16267 * 309.16190 * 29 20 19 31 31 O 1.42961 * 109.51159 * 65.25077 * 17 16 15 32 32 H 1.08999 * 109.47277 * 269.97874 * 1 2 3 33 33 H 1.09003 * 109.47335 * 29.98038 * 1 2 3 34 34 H 1.09005 * 109.47053 * 149.97580 * 1 2 3 35 35 H 1.08000 * 120.00035 * 359.97438 * 3 2 1 36 36 H 1.07998 * 119.99839 * 180.02562 * 4 3 2 37 37 H 1.08007 * 119.99797 * 180.02562 * 5 4 3 38 38 H 1.07992 * 120.00372 * 180.23268 * 6 5 4 39 39 H 1.09001 * 117.51014 * 145.03368 * 10 8 7 40 40 H 1.09001 * 117.51500 * 359.97438 * 10 8 7 41 41 H 0.96999 * 119.99988 * 359.97438 * 15 13 11 42 42 H 1.09002 * 109.47402 * 59.99355 * 16 15 13 43 43 H 1.09011 * 109.46852 * 299.99574 * 16 15 13 44 44 H 1.08998 * 109.68429 * 68.04779 * 19 17 16 45 45 H 1.09005 * 109.71312 * 307.51439 * 19 17 16 46 46 H 0.96998 * 120.00057 * 180.02562 * 24 23 21 47 47 H 1.09005 * 109.67636 * 68.94280 * 29 20 19 48 48 H 1.08994 * 109.67900 * 189.48972 * 29 20 19 49 49 H 1.09000 * 109.65670 * 292.56892 * 30 29 20 50 50 H 1.08999 * 109.44869 * 172.37213 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0005 6 6 3.5806 -1.1969 0.0039 7 6 2.1981 -1.1969 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.4422 -2.4663 0.4261 10 6 2.2541 -3.7854 0.2018 11 6 1.6785 -3.4529 -1.1762 12 1 2.3771 -3.1342 -1.9499 13 6 0.5054 -4.2683 -1.6557 14 8 -0.5737 -4.1554 -1.1137 15 7 0.6554 -5.1233 -2.6867 16 6 -0.4848 -5.9164 -3.1524 17 6 -0.0483 -6.7978 -4.3244 18 1 0.3964 -6.1761 -5.1015 19 6 -1.2666 -7.5345 -4.8927 20 7 -0.7960 -8.5106 -5.8882 21 6 -1.3508 -8.5652 -7.1390 22 1 -0.7734 -8.9429 -7.9698 23 6 -2.6554 -8.1350 -7.3389 24 7 -3.4660 -7.9921 -6.3118 25 14 -3.2605 -7.7591 -9.0657 26 1 -3.0046 -6.3304 -9.3798 27 1 -2.5400 -8.6170 -10.0404 28 1 -4.7180 -8.0310 -9.1496 29 6 0.2842 -9.4306 -5.4979 30 6 1.4306 -8.5980 -4.9019 31 8 0.9111 -7.7554 -3.8703 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3634 0.8902 -0.5135 34 1 -0.3633 -0.8898 -0.5142 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1327 0.0010 37 1 5.3517 0.0001 0.0014 38 1 4.1206 -2.1322 0.0077 39 1 1.7842 -4.5940 0.7617 40 1 3.3314 -3.6856 0.3345 41 1 1.5184 -5.2135 -3.1203 42 1 -1.2830 -5.2492 -3.4776 43 1 -0.8461 -6.5458 -2.3390 44 1 -1.9387 -6.8202 -5.3682 45 1 -1.7905 -8.0527 -4.0895 46 1 -4.3776 -7.6918 -6.4516 47 1 -0.0857 -10.1366 -4.7543 48 1 0.6395 -9.9724 -6.3743 49 1 1.8812 -7.9836 -5.6814 50 1 2.1836 -9.2651 -4.4824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035546258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:39 Heat of formation + Delta-G solvation = -12.818317 kcal Electronic energy + Delta-G solvation = -29413.984912 eV Core-core repulsion = 25407.319677 eV Total energy + Delta-G solvation = -4006.665234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.48981 -39.39360 -38.46723 -36.52532 -34.76992 -34.31334 -33.08145 -31.40637 -31.08018 -30.65903 -27.52632 -27.12019 -26.00147 -24.27543 -23.76294 -23.25193 -21.67428 -21.59957 -20.59101 -20.11407 -19.46979 -17.62848 -17.06551 -16.66630 -16.01980 -15.86602 -15.49272 -15.27461 -14.99044 -14.80876 -14.45185 -14.33522 -14.10489 -13.96427 -13.84047 -13.34770 -13.27498 -13.03733 -12.83355 -12.63628 -12.48303 -12.38540 -12.27224 -12.10956 -11.56503 -11.40763 -11.16097 -11.12733 -10.89557 -10.85532 -10.76150 -10.64158 -10.44828 -10.27878 -10.06234 -9.80243 -9.67641 -9.10861 -9.02087 -8.87302 -8.70490 -8.57869 -6.79033 -5.87434 -3.31599 1.02790 1.12456 2.55885 3.17495 3.32726 3.39517 3.41105 3.43562 3.85082 4.22559 4.33622 4.41416 4.49818 4.59237 4.66797 4.70594 4.77017 4.94001 5.02394 5.08986 5.16580 5.28651 5.32656 5.39128 5.45129 5.46852 5.52969 5.61230 5.63851 5.70388 5.81442 5.82653 5.86033 5.90544 5.98522 6.00074 6.09686 6.21463 6.24678 6.25876 6.34080 6.43388 6.48351 6.65198 6.74662 6.75371 7.03661 7.44683 7.65263 7.68155 7.81604 8.29875 8.34401 9.07639 9.70524 10.27572 11.20526 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002045 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.175359 B =13688.894124 C =14430.419502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.086 4.086 9 H 0.129 0.871 10 C -0.144 4.144 11 C -0.174 4.174 12 H 0.124 0.876 13 C 0.539 3.461 14 O -0.544 6.544 15 N -0.715 5.715 16 C 0.132 3.868 17 C 0.056 3.944 18 H 0.056 0.944 19 C 0.152 3.848 20 N -0.594 5.594 21 C -0.257 4.257 22 H 0.069 0.931 23 C 0.003 3.997 24 N -0.902 5.902 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.279 1.279 28 H -0.290 1.290 29 C 0.109 3.891 30 C 0.050 3.950 31 O -0.390 6.390 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.402 0.598 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.031 0.969 46 H 0.256 0.744 47 H 0.027 0.973 48 H 0.062 0.938 49 H 0.043 0.957 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.441 14.821 13.120 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.143 4.143 6 C -0.134 4.134 7 C -0.053 4.053 8 C -0.104 4.104 9 H 0.147 0.853 10 C -0.182 4.182 11 C -0.196 4.196 12 H 0.141 0.859 13 C 0.325 3.675 14 O -0.422 6.422 15 N -0.365 5.365 16 C 0.009 3.991 17 C -0.004 4.004 18 H 0.074 0.926 19 C 0.026 3.974 20 N -0.318 5.318 21 C -0.386 4.386 22 H 0.087 0.913 23 C -0.196 4.196 24 N -0.546 5.546 25 Si 0.735 3.265 26 H -0.213 1.213 27 H -0.204 1.204 28 H -0.216 1.216 29 C -0.018 4.018 30 C -0.028 4.028 31 O -0.309 6.309 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.236 0.764 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.045 0.955 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.501 14.887 13.647 24.863 hybrid contribution 0.045 0.098 -1.505 1.509 sum 14.546 14.986 12.142 24.158 Atomic orbital electron populations 1.20890 0.90948 1.03458 1.02574 1.19777 0.96308 0.92318 0.98867 1.21040 0.94277 0.97414 1.01079 1.21131 0.94315 0.98057 1.00416 1.21090 0.99790 0.92440 1.00975 1.21062 0.93538 0.98357 1.00456 1.19008 0.93002 0.92759 1.00521 1.21103 1.00904 0.87808 1.00613 0.85308 1.23140 1.00239 0.98798 0.95980 1.22344 1.00342 1.03253 0.93627 0.85855 1.19552 0.88607 0.79579 0.79783 1.90697 1.27500 1.67068 1.56945 1.45918 1.14468 1.41768 1.34330 1.21425 0.88136 0.92827 0.96754 1.23138 0.93083 0.90028 0.94147 0.92633 1.21310 0.91488 0.92766 0.91873 1.44070 1.40504 1.35090 1.12151 1.19201 0.94413 1.40409 0.84605 0.91304 1.25074 0.95351 1.01811 0.97399 1.70015 1.05674 1.49727 1.29135 0.86241 0.77851 0.78393 0.83989 1.21333 1.20389 1.21623 1.21690 0.89756 0.92433 0.97890 1.23080 0.96102 0.93134 0.90483 1.87786 1.59200 1.49195 1.34752 0.91014 0.91561 0.90503 0.86048 0.86198 0.86127 0.85813 0.87617 0.87489 0.76369 0.89910 0.90708 0.88580 0.95057 0.93370 0.95509 0.91964 0.93851 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.33 36.00 0.34 -0.76 16 2 C -0.07 -0.71 5.88 -104.63 -0.62 -1.32 16 3 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 4 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 5 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 6 C -0.12 -1.00 9.30 -39.58 -0.37 -1.37 16 7 C -0.05 -0.52 5.61 -104.62 -0.59 -1.11 16 8 C -0.09 -0.89 4.66 -91.73 -0.43 -1.32 16 9 H 0.13 1.51 6.43 -51.93 -0.33 1.17 16 10 C -0.14 -1.31 9.57 -26.70 -0.26 -1.56 16 11 C -0.17 -1.87 5.82 -91.78 -0.53 -2.40 16 12 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 13 C 0.54 7.77 7.61 -10.99 -0.08 7.68 16 14 O -0.54 -9.79 16.26 5.56 0.09 -9.70 16 15 N -0.71 -10.13 5.51 -60.29 -0.33 -10.46 16 16 C 0.13 2.24 5.34 -4.05 -0.02 2.22 16 17 C 0.06 1.04 2.81 -26.58 -0.07 0.96 16 18 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 19 C 0.15 3.57 4.73 -3.53 -0.02 3.55 16 20 N -0.59 -14.69 3.04 -171.57 -0.52 -15.21 16 21 C -0.26 -6.91 9.65 -15.06 -0.15 -7.06 16 22 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 23 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 24 N -0.90 -25.77 11.14 55.49 0.62 -25.15 16 25 Si 0.91 21.32 29.59 -169.99 -5.03 16.30 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 C 0.11 2.24 6.76 -3.32 -0.02 2.21 16 30 C 0.05 0.86 7.00 37.52 0.26 1.12 16 31 O -0.39 -7.15 10.33 -35.23 -0.36 -7.52 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.08 0.80 6.65 -51.93 -0.35 0.45 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.12 0.86 6.02 -52.49 -0.32 0.54 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.11 0.74 6.17 -51.93 -0.32 0.42 16 41 H 0.40 4.88 8.47 -40.82 -0.35 4.53 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 44 H 0.10 2.48 6.14 -51.93 -0.32 2.16 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 49 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 403.73 15.07 6.08 6.08 Total: -1.00 -31.85 403.73 -11.13 -42.98 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.86 Total: 6.01 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.82 Total: -3.32 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.24 Total: -50.83 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.27 Total: -17.21 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.85 -11.13 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035546258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.161 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds